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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061955 ID=TCONS_00061955|Name=TCONS_00061955|organism=Clytia hemisphaerica|type=transcript|length=1163bp
ACTTCACATATTGTTCCAAATTCCCAGTGTGAATGCTTCTGCTTAATGTT
TCATCAGTTGATAGATGAAAAATAATATTCACATTTTCACTACCTTACAA
TCCCCCCATTTTTAGAAAGTTACTTACCAAAATGGGAGCATCACTGACCT
CCATACAAGAAACCATCCCTTATACGGAGAATCGGCCGCGGGAAGAAATT
CTGGACTACCTTGAGGTTCTTCAAGAGCTTGCGAATACAAAAGCTCAACT
ATTTCACCAACAAGTGATCAgtgaagaaaacaaaagaaaacacaacCTGA
GGGATGTGAAATGTCTTTCAACTAAATTATACGCGTCAATGAAGCGTGAC
GTCAACATCAACCAAGAGCTGATCGACGCCATCGAAGAATTTGTCGGTAT
GGAATGGATAAATGGTGGGTTGAGAGCTCTCTTCAAAAGAAGTCTGCAGA
ATGTTCTTACTGGAGACGGTGAAAAGGAGAACAGGTCATCTTTCATCTAT
AACACTGATGGAGATTTTCATCGCATTGATTATTATATCTACAAACGAGA
TGTAAAATACGGACCGGTCAGCAAATCCACAAACAACATTGTGGTGGTTG
CTTTCTCAATATACTCAATCGACACTTCGCAAAATAATTCTATCGAAACT
GATGAAGGTGTACACGAGAAACCAAATATGACAGATGATCTAAAAGAAGG
ACCGGAATCTGTAGAGGGTGGAAAAGAAGGACCAGAATCCGTAGAGGGCA
TAAAAGAAGTACCGGAATCCGAAGAGGGCGTAAAAGAAGGACCAGAATCT
GAAGAGGGTTTAAAAGAAGGACCAGAATCTGAAGAAGGTGTTAAAGAAGG
ACCAGAGTCTGAAGAGGGCGTAAAAGAAGAACCAGAATCTGAAGAGGGCG
TAAAAGAAAGACTGACAAGCGAGCACGAAGAAAATACAGGATCTGCGGAG
ACGACAAACGAACAACTGCAAGCAATGGAAAAACTCGACGAAGAGCCTGA
AGAAAAAGTAGACAGAGATGAAAGAAAAGAAGTTACCCAACCAACAGAAG
AAATTACAAGGGGAATACTACAAAATGAGGACAACGAAAAAGAAGTTTTC
GAGGATTCTCCAACGGAAGAGAAGGCACAAGAAGTTTCACAACAGCAGAA
CTCGCGTCAAGGT Run BLAST on NCBI protein sequence of TCONS_00061955-protein >TCONS_00061955-protein ID=TCONS_00061955-protein|Name=TCONS_00061955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MGASLTSIQETIPYTENRPREEILDYLEVLQELANTKAQLFHQQVISEEN
KRKHNLRDVKCLSTKLYASMKRDVNINQELIDAIEEFVGMEWINGGLRAL
FKRSLQNVLTGDGEKENRSSFIYNTDGDFHRIDYYIYKRDVKYGPVSKST
NNIVVVAFSIYSIDTSQNNSIETDEGVHEKPNMTDDLKEGPESVEGGKEG
PESVEGIKEVPESEEGVKEGPESEEGLKEGPESEEGVKEGPESEEGVKEE
PESEEGVKERLTSEHEENTGSAETTNEQLQAMEKLDEEPEEKVDRDERKE
VTQPTEEITRGILQNEDNEKEVFEDSPTEEKAQEVSQQQNSRQG Run BLAST on NCBI transcript from alignment at scaffold_361:1662348..1664644+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061955 ID=TCONS_00061955|Name=TCONS_00061955|organism=Clytia hemisphaerica|type=transcript|length=2297bp|location=Sequence derived from alignment at scaffold_361:1662348..1664644+ (Clytia hemisphaerica)
ACTTCACATATTGTTCCAAATTCCCAGTGTGAATGCTTCTGCTTAATGTT
TCATCAGTTGATAGATGAAAAATAATATTCACATTTTCACTACCTTACAA
TCCCCCCATTTTTAGAAAGTTACTTACCAAAATGGGAGCATCACTGACCT
CCATACAAGAAACCATCCCTTATACGGAGAATCGGCCGCGGGAAGAAATT
CTGGACTACCTTGAGGTTCTTCAAGAGCTTGCGAATACAAAAGCTCAACT
ATTTCACCAACAAGTGATCAgtgaagaaaacaaaagaaaacacaacCTGA
GGGATGTGAAATGTCTTTCAACTAAATTATACGCGTCAATGAAGCGTGAC
GTCAACATCAACCAAGAGGTACATTTTATCTTTGTTATGTGTACACTTTG
TTCGCAAttcaaaagttcttgaaaattaATGTTTCTTCTTACACCATGTT
GAACCTATAAGGGTTAGAGGGGGAGCCAATAACTACCACTGCATCtgtct
aaaacacccaattttaaagaaaaaatggacaaaagtactgacaaaatggt
gaaaataaaaactaccgtgaaaagcacaggtcgaaatcatatatcgacgc
tgtgccgaccaatccagattctattcagcgcgcaattaACACAGGGataa
gtaaccatgacgaccatccaagatcttggatgaagttcaaagttgatatt
tttattcacatcgttgaaaacacaactcaaaaatatcatcaatgcttttt
aaaaagagtcagtgatagagaatcataacataaagtctgtctgttatttc
gattcaattaaagtgacattttcatacttaaaagtttagtaattactgtt
atacatttggggatcatgtaaaagatttcttttgaaagaaactcatttca
attacacttggaggtttctgggggaattcgtaaatagtaaactgcatact
gatacagtctgctagacattaatatttgctcttcatctttgatttttttt
ctacagtgattagattgacacatgcgcgataaaatttctattattggtct
tcagaggttgaaatattatcatcctctgatactcagggtagcatATGTCT
GGTTGAGGCACAAGATTTTTGTTCTAGCATGCGATTATTGAGGATGGAAG
AAGCTTAAATCTTTTTTACGAGATATTAGTGCCGATAATTCTAAATTCAA
GTTCGTCAAGTATTGATCAACGATGATAACTTTTTCAGCTGATCGACGCC
ATCGAAGAATTTGTCGGTATGGAATGGATAAATGGTGGGTTGAGAGCTCT
CTTCAAAAGAAGTCTGCAGAATGTTCTTACTGGAGGTGAGAGATCTCTCA
GAGCAATTAAACATATACATGACACAGTGCAGAATTGTTTGCCCTTTGTT
TCTAAAAGGTATTTTCAACAGTTTTAGTAAAGCTTTTCAAAATGCCTGAT
AATCATCCAATTTTTCTCACATTGTAGACGGTGAAAAGGAGAACAGGTCA
TCTTTCATCTATAACACTGATGGAGATTTTCATCGCATTGATTATTATAT
CTACAAACGAGATGTAAAATACGGACCGGTCAGCAAATCCACAAACAACA
TTGTGGTGGTTGCTTTCTCAATATACTCAATCGACACTTCGCAAAATAAT
TCTATCGAAACTGATGAAGGTGTACACGAGAAACCAAATATGACAGATGA
TCTAAAAGAAGGACCGGAATCTGTAGAGGGTGGAAAAGAAGGACCAGAAT
CCGTAGAGGGCATAAAAGAAGTACCGGAATCCGAAGAGGGCGTAAAAGAA
GGACCAGAATCTGAAGAGGGTTTAAAAGAAGGACCAGAATCTGAAGAAGG
TGTTAAAGAAGGACCAGAGTCTGAAGAGGGCGTAAAAGAAGAACCAGAAT
CTGAAGAGGGCGTAAAAGAAAGACTGACAAGCGAGCACGAAGAAAATACA
GGATCTGCGGAGACGACAAACGAACAACTGCAAGCAATGGAAAAACTCGA
CGAAGAGCCTGAAGAAAAAGTAGACAGAGATGAAAGAAAAGAAGTTACCC
AACCAACAGAAGAAATTACAAGGGGAATACTACAAAATGAGGACAACGAA
AAAGAAGGTATATCAATAATTCTGagcaaaattgttaaaatgaaTTAGCT
CCATTGAGAACGATTTACATATTTGTCTTATCTGCGGAGAGTCATTTTTC
TTATtgtttttccacttttttttcATCAGTTTTCGAGGATTCTCCAACGG
AAGAGAAGGCACAAGAAGTTTCACAACAGCAGAACTCGCGTCAAGGT Coding sequence (CDS) from alignment at scaffold_361:1662348..1664644+ >TCONS_00061955 ID=TCONS_00061955|Name=TCONS_00061955|organism=Clytia hemisphaerica|type=CDS|length=4128bp|location=Sequence derived from alignment at scaffold_361:1662348..1664644+ (Clytia hemisphaerica)
ATGGGAGCATCACTGACCTCCATACAAGAAACCATCCCTTATACGGAGAA
TCGGCCGCGGGAAGAAATTCTGGACTACCTTGAGGTTCTTCAAGAGCTTG
CGAATACAAAAGCTCAACTATTTCACCAACAAGTGATCAgtgaagaaaac
aaaagaaaacacaacCTGAGGGATGTGAAATGTCTTTCAACTAAATTATA
CGCGTCAATGAAGCGTGACGTCAACATCAACCAAGAGCTGATCGACGCCA
TCGAAGAATTTGTCGGTATGGAATGGATAAATGGTGGGTTGAGAGCTCTC
TTCAAAAGAAGTCTGCAGAATGTTCTTACTGGAGACGGTGAAAAGGAGAA
CAGGTCATCTTTCATCTATAACACTGATGGAGATTTTCATCGCATTGATT
ATTATATCTACAAACGAGATGTAAAATACGGACCGGTCAGCAAATCCACA
AACAACATTGTGGTGGTTGCTTTCTCAATATACTCAATCGACACTTCGCA
AAATAATTCTATCGAAACTGATGAAGGTGTACACGAGAAACCAAATATGA
CAGATGATCTAAAAGAAGGACCGGAATCTGTAGAGGGTGGAAAAGAAGGA
CCAGAATCCGTAGAGGGCATAAAAGAAGTACCGGAATCCGAAGAGGGCGT
AAAAGAAGGACCAGAATCTGAAGAGGGTTTAAAAGAAGGACCAGAATCTG
AAGAAGGTGTTAAAGAAGGACCAGAGTCTGAAGAGGGCGTAAAAGAAGAA
CCAGAATCTGAAGAGGGCGTAAAAGAAAGACTGACAAGCGAGCACGAAGA
AAATACAGGATCTGCGGAGACGACAAACGAACAACTGCAAGCAATGGAAA
AACTCGACGAAGAGCCTGAAGAAAAAGTAGACAGAGATGAAAGAAAAGAA
GTTACCCAACCAACAGAAGAAATTACAAGGGGAATACTACAAAATGAGGA
CAACGAAAAAGAAGTTTTCGAGGATTCTCCAACGGAAGAGAAGGCACAAG
AAGTTTCACAACAGCAGAACTCGCGTCAAGGTATGGGAGCATCACTGACC
TCCATACAAGAAACCATCCCTTATACGGAGAATCGGCCGCGGGAAGAAAT
TCTGGACTACCTTGAGGTTCTTCAAGAGCTTGCGAATACAAAAGCTCAAC
TATTTCACCAACAAGTGATCAgtgaagaaaacaaaagaaaacacaacCTG
AGGGATGTGAAATGTCTTTCAACTAAATTATACGCGTCAATGAAGCGTGA
CGTCAACATCAACCAAGAGCTGATCGACGCCATCGAAGAATTTGTCGGTA
TGGAATGGATAAATGGTGGGTTGAGAGCTCTCTTCAAAAGAAGTCTGCAG
AATGTTCTTACTGGAGACGGTGAAAAGGAGAACAGGTCATCTTTCATCTA
TAACACTGATGGAGATTTTCATCGCATTGATTATTATATCTACAAACGAG
ATGTAAAATACGGACCGGTCAGCAAATCCACAAACAACATTGTGGTGGTT
GCTTTCTCAATATACTCAATCGACACTTCGCAAAATAATTCTATCGAAAC
TGATGAAGGTGTACACGAGAAACCAAATATGACAGATGATCTAAAAGAAG
GACCGGAATCTGTAGAGGGTGGAAAAGAAGGACCAGAATCCGTAGAGGGC
ATAAAAGAAGTACCGGAATCCGAAGAGGGCGTAAAAGAAGGACCAGAATC
TGAAGAGGGTTTAAAAGAAGGACCAGAATCTGAAGAAGGTGTTAAAGAAG
GACCAGAGTCTGAAGAGGGCGTAAAAGAAGAACCAGAATCTGAAGAGGGC
GTAAAAGAAAGACTGACAAGCGAGCACGAAGAAAATACAGGATCTGCGGA
GACGACAAACGAACAACTGCAAGCAATGGAAAAACTCGACGAAGAGCCTG
AAGAAAAAGTAGACAGAGATGAAAGAAAAGAAGTTACCCAACCAACAGAA
GAAATTACAAGGGGAATACTACAAAATGAGGACAACGAAAAAGAAGTTTT
CGAGGATTCTCCAACGGAAGAGAAGGCACAAGAAGTTTCACAACAGCAGA
ACTCGCGTCAAGGTATGGGAGCATCACTGACCTCCATACAAGAAACCATC
CCTTATACGGAGAATCGGCCGCGGGAAGAAATTCTGGACTACCTTGAGGT
TCTTCAAGAGCTTGCGAATACAAAAGCTCAACTATTTCACCAACAAGTGA
TCAgtgaagaaaacaaaagaaaacacaacCTGAGGGATGTGAAATGTCTT
TCAACTAAATTATACGCGTCAATGAAGCGTGACGTCAACATCAACCAAGA
GCTGATCGACGCCATCGAAGAATTTGTCGGTATGGAATGGATAAATGGTG
GGTTGAGAGCTCTCTTCAAAAGAAGTCTGCAGAATGTTCTTACTGGAGAC
GGTGAAAAGGAGAACAGGTCATCTTTCATCTATAACACTGATGGAGATTT
TCATCGCATTGATTATTATATCTACAAACGAGATGTAAAATACGGACCGG
TCAGCAAATCCACAAACAACATTGTGGTGGTTGCTTTCTCAATATACTCA
ATCGACACTTCGCAAAATAATTCTATCGAAACTGATGAAGGTGTACACGA
GAAACCAAATATGACAGATGATCTAAAAGAAGGACCGGAATCTGTAGAGG
GTGGAAAAGAAGGACCAGAATCCGTAGAGGGCATAAAAGAAGTACCGGAA
TCCGAAGAGGGCGTAAAAGAAGGACCAGAATCTGAAGAGGGTTTAAAAGA
AGGACCAGAATCTGAAGAAGGTGTTAAAGAAGGACCAGAGTCTGAAGAGG
GCGTAAAAGAAGAACCAGAATCTGAAGAGGGCGTAAAAGAAAGACTGACA
AGCGAGCACGAAGAAAATACAGGATCTGCGGAGACGACAAACGAACAACT
GCAAGCAATGGAAAAACTCGACGAAGAGCCTGAAGAAAAAGTAGACAGAG
ATGAAAGAAAAGAAGTTACCCAACCAACAGAAGAAATTACAAGGGGAATA
CTACAAAATGAGGACAACGAAAAAGAAGTTTTCGAGGATTCTCCAACGGA
AGAGAAGGCACAAGAAGTTTCACAACAGCAGAACTCGCGTCAAGGTATGG
GAGCATCACTGACCTCCATACAAGAAACCATCCCTTATACGGAGAATCGG
CCGCGGGAAGAAATTCTGGACTACCTTGAGGTTCTTCAAGAGCTTGCGAA
TACAAAAGCTCAACTATTTCACCAACAAGTGATCAgtgaagaaaacaaaa
gaaaacacaacCTGAGGGATGTGAAATGTCTTTCAACTAAATTATACGCG
TCAATGAAGCGTGACGTCAACATCAACCAAGAGCTGATCGACGCCATCGA
AGAATTTGTCGGTATGGAATGGATAAATGGTGGGTTGAGAGCTCTCTTCA
AAAGAAGTCTGCAGAATGTTCTTACTGGAGACGGTGAAAAGGAGAACAGG
TCATCTTTCATCTATAACACTGATGGAGATTTTCATCGCATTGATTATTA
TATCTACAAACGAGATGTAAAATACGGACCGGTCAGCAAATCCACAAACA
ACATTGTGGTGGTTGCTTTCTCAATATACTCAATCGACACTTCGCAAAAT
AATTCTATCGAAACTGATGAAGGTGTACACGAGAAACCAAATATGACAGA
TGATCTAAAAGAAGGACCGGAATCTGTAGAGGGTGGAAAAGAAGGACCAG
AATCCGTAGAGGGCATAAAAGAAGTACCGGAATCCGAAGAGGGCGTAAAA
GAAGGACCAGAATCTGAAGAGGGTTTAAAAGAAGGACCAGAATCTGAAGA
AGGTGTTAAAGAAGGACCAGAGTCTGAAGAGGGCGTAAAAGAAGAACCAG
AATCTGAAGAGGGCGTAAAAGAAAGACTGACAAGCGAGCACGAAGAAAAT
ACAGGATCTGCGGAGACGACAAACGAACAACTGCAAGCAATGGAAAAACT
CGACGAAGAGCCTGAAGAAAAAGTAGACAGAGATGAAAGAAAAGAAGTTA
CCCAACCAACAGAAGAAATTACAAGGGGAATACTACAAAATGAGGACAAC
GAAAAAGAAGTTTTCGAGGATTCTCCAACGGAAGAGAAGGCACAAGAAGT
TTCACAACAGCAGAACTCGCGTCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061955-exon-scaffold_361-1491911889:1662348..1662715 | TCONS_00061955-exon-scaffold_361-1491911889:1662348..1662715 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1510915933:1662348..1662715 | TCONS_00061955-exon-scaffold_361-1510915933:1662348..1662715 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1575043694:1662348..1662715 | TCONS_00061955-exon-scaffold_361-1575043694:1662348..1662715 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1491911889:1663586..1663682 | TCONS_00061955-exon-scaffold_361-1491911889:1663586..1663682 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1510915933:1663586..1663682 | TCONS_00061955-exon-scaffold_361-1510915933:1663586..1663682 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1575043694:1663586..1663682 | TCONS_00061955-exon-scaffold_361-1575043694:1663586..1663682 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1491911889:1663825..1664454 | TCONS_00061955-exon-scaffold_361-1491911889:1663825..1664454 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1510915933:1663825..1664454 | TCONS_00061955-exon-scaffold_361-1510915933:1663825..1664454 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1575043694:1663825..1664454 | TCONS_00061955-exon-scaffold_361-1575043694:1663825..1664454 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1491911889:1664577..1664644 | TCONS_00061955-exon-scaffold_361-1491911889:1664577..1664644 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1510915933:1664577..1664644 | TCONS_00061955-exon-scaffold_361-1510915933:1664577..1664644 | Clytia hemisphaerica | exon |
| TCONS_00061955-exon-scaffold_361-1575043694:1664577..1664644 | TCONS_00061955-exon-scaffold_361-1575043694:1664577..1664644 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1662348..1664644 + |
Blast
The following BLAST results are available for this feature:
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