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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061941 ID=TCONS_00061941|Name=TCONS_00061941|organism=Clytia hemisphaerica|type=transcript|length=2151bp
atacacgcaaaatttttcaaaaactggcaatcgcaaaatttgatacacgc
gaaacacgtttcctcgaaaaaatttcgcgaatcacgAAATTTTGTAaccc
gcaaaatttaataccaataaggtatttccaataaaattactTTTAAGGGG
GCCCCCCTTTTAAGTGTTTCAAGGCCGGTCCGTTCAATCGCTACTCAGTG
GAAAACGCCATATATTTTTAGTACAATCATGGTAACGCATAAATCATTTA
TTAGTCATCGACTACAAATTTCAAGGGATCGATTCGATCTTGGCTGGTCA
TATTCCTTTTACCACCCGTGTGTCGAGACTCGCTGACTTTGTTTCCTTTC
TTGTACTTGATGGAGGGAGCATTCAAGACTCGTCCCCGCATTTCCGCCGT
TTTGTCGTTGATCTCTAAGCCTTGTCCTCTTGGAACGGAAATAAGGTTCC
TTGATAGGGGCTGCACGTTTTTCTTCTGGAAACAAAGTGTTGTGTGGTCT
GCCGTTGTGAGGGCTATTTAGAAAGAATAGCGATAGGGAGGTGGTTTTCC
CACCCTCTCCAAGTTACTATATTGAGCTCCAATGAATGGGATATAATAAA
TCCAATCCACATTTACTTCATCAACTTTGGAGTAATTTCCCGAACATCTC
TTAATtcacacttttttcttcagttgtAAGAGACTTTTCTGTTCTGTAAA
TTAAACGTGGAAAAGatttcaatttctgaaaattgacgtcaaataatatt
ttcaccAAGACTTGAACCATTTAAGAGTTTAGAGCGGAAGAGAGAAGTCA
TGGTTCTTTAGTTCAGCAAATATGAAGAAACTAAAAAGCcattttagtaa
atttttcaGTGTCATTTTTTGCTGCTTTTTGAAAAAGAGTGACGAAGACG
CTCCAGAAGCTGattttggTGATGGGAAAGcagcaaaaaaagtttcctcT
GTGATTGAAGCAGAGGAAGCAGcaaagaaagaaaatacttttgttcagcg
aaaaaatgaaaaggaatATTTGAGGCTTAAAGatatatTTAGAAATTACG
GATATGAAAAACTAACCGAGATGAGGGACACCCTTCAAAAGATGCTTATG
AAGCaaaagtttatgaaaaatgtcgaTCAAAGTCGCCAAGACTTTGAGAT
GGATAATTACGAGATAAAACGGTTTTTTGGCCGTGCTGGAGGGCTGAGAC
GAAATCTCATTGATATGGATGATTACGAAATAAAGCGATTTTTCGGTCGT
GCCGAGGGCCTAAAACGAAGAAAAGCTTATTTCTCAGATCCCTTCAATAT
GTGGCAAGTTAAGAAAGTTGAAAAGCAGGACCTTTGGGAATTCTTTATGT
TGACGGGTAAACTTCCATGGGAATGTTTGGACGAAATTGGATGGGACTAC
GATACGGTTGAGTCAATGAGAATTGAGACACTGTTTCCCATCCAGGAGAA
GGAATTCGAGGACGAAGTAAACCACGACGATTTTTTTGATGAGAATTACG
AAAGTGAATATTCGTATTACACTGATAGTGAATCGGAATATGAAACAAAC
NGATTTTTGTGATGAGAATTACGAAAGTGAATATTCGTATTACACTGATA
GTGAATCGGAATATGAAACAAACGCCGAGATCGaaactgaaagtgaaagt
ggcgTCGAAGGGAACAATGTTGAAGAGGATGGCGAAAGTGAAGATGAAGG
ACGGNGCGTCGAAGAGAACAATGTTGAAGAGGATAGCGAAAGTGAAGATG
AAGGACGTCGCGATCCGCATGCAGTTTTGTTGCGCCTCTTTCCACCCTCT
CAACCCGACCCTGAATGGGTAGAGCGGTACGGCCACATCGCCGCAGGAGC
TTATGCCAGTGACAGCGAAGAGGAGGAAAGCGAAGAATCGGAGGAGGAAA
GCGAAGACGAGGTGAGTGAATACGAACTTGATGACGAGAGTGAAGACGAA
GAAGATGGAGATGTTTTCAACCCGTTCGCTCACGAACTCTAAATATCTTC
TTTATAATATACAGATTGTTTTAAAGGAAATACATTGCGCAAAATAAATC
AATACAGAAACTGGATATTTTATACAGGGTTTCGATGGCAAAATCATGag
atttttaggtttaaatttTTGCTCATCACTCTTTGGTCAAAACTCCTAAT
A Run BLAST on NCBI protein sequence of TCONS_00061941-protein >TCONS_00061941-protein ID=TCONS_00061941-protein|Name=TCONS_00061941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MKKLKSHFSKFFSVIFCCFLKKSDEDAPEADFGDGKAAKKVSSVIEAEEA
AKKENTFVQRKNEKEYLRLKDIFRNYGYEKLTEMRDTLQKMLMKQKFMKN
VDQSRQDFEMDNYEIKRFFGRAGGLRRNLIDMDDYEIKRFFGRAEGLKRR
KAYFSDPFNMWQVKKVEKQDLWEFFMLTGKLPWECLDEIGWDYDTVESMR
IETLFPIQEKEFEDEVNHDDFFDENYESEYSYYTDSESEYETNXFL Run BLAST on NCBI transcript from alignment at scaffold_361:1456879..1460011+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061941 ID=TCONS_00061941|Name=TCONS_00061941|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at scaffold_361:1456879..1460011+ (Clytia hemisphaerica)
atacacgcaaaatttttcaaaaactggcaatcgcaaaatttgatacacgc
gaaacacgtttcctcgaaaaaatttcgcgaatcacgAAATTTTGTAaccc
gcaaaatttaataccaataaggtatttccaataaaattactTTTAAGGGG
GCCCCCCTTTTAAGTGTTTCAAGGCCGGTCCGTTCAATCGCTACTCAGTG
GAAAACGCCATATATTTTTAGTACAATCATGGTAACGCATAAATCATTTA
TTAGTCATCGACTACAAATTTCAAGGGATCGATTCGATCTTGGCTGGTCA
TATTCCTTTTACCACCCGTGTGTCGAGACTCGCTGACTTTGTTTCCTTTC
TTGTACTTGATGGAGGGAGCATTCAAGACTCGTCCCCGCATTTCCGCCGT
TTTGTCGTTGATCTCTAAGCCTTGTCCTCTTGGAACGGAAATAAGGTTCC
TTGATAGGGGCTGCACGTTTTTCTTCTGGAAACAAAGTGTTGTGTGGTCT
GCCGTTGTGAGGGCTATTTAGAAAGAATAGCGATAGGGAGGTGGTTTTCC
CACCCTCTCCAAGTTACTATATTGAGCTCCAATGAATGGGATATAATAAA
TCCAATCCACATTTACTTCATCAACTTTGGAGTAATTTCCCGAACATCTC
TTAATtcacacttttttcttcagttgtAAGAGACTTTTCTGTTCTGTAAA
TTAAACGTGGAAAAGatttcaatttctgaaaattgacgtcaaataatatt
ttcaccAAGACTTGAACCATTTAAGAGTTTAGAGCGGAAGAGAGAAGTCA
TGGTTCTTTAGTTCAGCAAATATGAAGAAACTAAAAAGCcattttagtaa
atttttcaGTGTCATTTTTTGCTGCTTTTTGAAAAAGAGTGACGAAGACG
CTCCAGAAGCTGGTAagcctttaaatatttttctttcattgttttttcat
tattttagacgttatttaaataaagctttttatcTAACTACCTTCTATGT
CTAATTACCCTCCCTCAGATAGAACCGCACCATAGAGAGTGGCGCCATTA
GAATATAACGTCATACCTTTTAGCTTCTACCGTGGctgggtagctcagtc
ggtagagcaagCGCCTTACAATCCAAGGGTTGTGAGTTCGATcgccggtc
accgccaactcagcggatgagtagatTAGATTGGGCTATCTGATCTAGGt
cgtaagttactgggagctgagagtagatGTGGTGCTCCACCTCCCTCGTT
CCCGGCTctgccgacagccaccagatgaatatacttacacTTATTTAACC
ATaatttgcaatattttctttagattttggTGATGGGAAAGcagcaaaaa
aagtttcctcTGTGATTGAAGCAGAGGAAGCAGcaaagaaagaaaatact
tttgttcagcgaaaaaatgaaaaggaatATTTGAGGCTTAAAGGtttgtt
gactttttttttttggtgaacCATAAATTTTTACAGTtcaaaaaacttat
tttgagtgcaacccTGTTAGTGTTTCACTTCTCTTGGAAATCCAAActat
ttcaataaaaagtttTCACCTCTACTTCATGGAACGCATGGAACGCAAgg
aaatcaaacaaaatattttgcattgtCCGAGCGCTAACGCTTTTCCAcac
tattttttcttttttagatatatTTAGAAATTACGGATATGAAAAACTAA
CCGAGATGAGGGACACCCTTCAAAAGATGCTTATGAAGCaaaagtttatg
aaaaatgtcgaTCAAAGTCGCCAAGACTTTGAGATGGATAATTACGAGAT
AAAACGGTTTTTTGGCCGTGCTGGAGGGCTGAGACGAAATCTCATTGATA
TGGATGATTACGAAATAAAGCGATTTTTCGGTCGTGCCGAGGGCCTAAAA
CGAAGAAAAGGTGAGGAAAAagaaacatgtttttttcttttataagcatt
acatttataagaatatttagaCTCATGGAAAGATTTAAGCGTGTGCTAAA
TATTACATTTAAGAGCTcacgaaaaattaattttcctgttcttttttgtt
tttggctaGGATTTTACGGATTTTTCGGATTTTAggaatttccctaaaat
tttgcacggGATATAAGCTTCCATGCTGTCGGTTATTTCAAGGGTGGAAC
AATAAAAAGATGTCCCCGAAGGAGTACTCAATTTCTCTCAAATAGTAATG
AACAATGCTTAAATCAAGAATTTACCAATTCTGATCTTTCTCGCTCTTTT
TATTTAGCTTATTTCTCAGATCCCTTCAATATGTGGCAAGTTAAGAAAGT
TGAAAAGCAGGACCTTTGGGAATTCTTTATGTTGACGGGTAAACTTCCAT
GGGAATGTTTGGACGAAATTGGATGGGACTACGATACGGTTGAGTCAATG
AGAATTGAGACACTGTTTCCCATCCAGGAGAAGGAATTCGAGGACGAAGT
AAACCACGACGATTTTTTTGATGAGAATTACGAAAGTGAATATTCGTATT
ACACTGATAGTGAATCGGAATATGAAACAAACNGATTTTTGTGATGAGAA
TTACGAAAGTGAATATTCGTATTACACTGATAGTGAATCGGAATATGAAA
CAAACGCCGAGATCGaaactgaaagtgaaagtggcgTCGAAGGGAACAAT
GTTGAAGAGGATGGCGAAAGTGAAGATGAAGGACGGNGCGTCGAAGAGAA
CAATGTTGAAGAGGATAGCGAAAGTGAAGATGAAGGACGTCGCGATCCGC
ATGCAGTTTTGTTGCGCCTCTTTCCACCCTCTCAACCCGACCCTGAATGG
GTAGAGCGGTACGGCCACATCGCCGCAGGAGCTTATGCCAGTGACAGCGA
AGAGGAGGAAAGCGAAGAATCGGAGGAGGAAAGCGAAGACGAGGTGAGTG
AATACGAACTTGATGACGAGAGTGAAGACGAAGAAGATGGAGATGTTTTC
AACCCGTTCGCTCACGAACTCTAAATATCTTCTTTATAATATACAGATTG
TTTTAAAGGAAATACATTGCGCAAAATAAATCAATACAGAAACTGGATAT
TTTATACAGGGTTTCGATGGCAAAATCATGagatttttaggtttaaattt
TTGCTCATCACTCTTTGGTCAAAACTCCTAATA Coding sequence (CDS) from alignment at scaffold_361:1456879..1460011+ >TCONS_00061941 ID=TCONS_00061941|Name=TCONS_00061941|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_361:1456879..1460011+ (Clytia hemisphaerica)
ATGAAGAAACTAAAAAGCcattttagtaaatttttcaGTGTCATTTTTTG
CTGCTTTTTGAAAAAGAGTGACGAAGACGCTCCAGAAGCTGattttggTG
ATGGGAAAGcagcaaaaaaagtttcctcTGTGATTGAAGCAGAGGAAGCA
GcaaagaaagaaaatacttttgttcagcgaaaaaatgaaaaggaatATTT
GAGGCTTAAAGatatatTTAGAAATTACGGATATGAAAAACTAACCGAGA
TGAGGGACACCCTTCAAAAGATGCTTATGAAGCaaaagtttatgaaaaat
gtcgaTCAAAGTCGCCAAGACTTTGAGATGGATAATTACGAGATAAAACG
GTTTTTTGGCCGTGCTGGAGGGCTGAGACGAAATCTCATTGATATGGATG
ATTACGAAATAAAGCGATTTTTCGGTCGTGCCGAGGGCCTAAAACGAAGA
AAAGCTTATTTCTCAGATCCCTTCAATATGTGGCAAGTTAAGAAAGTTGA
AAAGCAGGACCTTTGGGAATTCTTTATGTTGACGGGTAAACTTCCATGGG
AATGTTTGGACGAAATTGGATGGGACTACGATACGGTTGAGTCAATGAGA
ATTGAGACACTGTTTCCCATCCAGGAGAAGGAATTCGAGGACGAAGTAAA
CCACGACGATTTTTTTGATGAGAATTACGAAAGTGAATATTCGTATTACA
CTGATAGTGAATCGGAATATGAAACAAACNGATTTTTGTGAATGAAGAAA
CTAAAAAGCcattttagtaaatttttcaGTGTCATTTTTTGCTGCTTTTT
GAAAAAGAGTGACGAAGACGCTCCAGAAGCTGattttggTGATGGGAAAG
cagcaaaaaaagtttcctcTGTGATTGAAGCAGAGGAAGCAGcaaagaaa
gaaaatacttttgttcagcgaaaaaatgaaaaggaatATTTGAGGCTTAA
AGatatatTTAGAAATTACGGATATGAAAAACTAACCGAGATGAGGGACA
CCCTTCAAAAGATGCTTATGAAGCaaaagtttatgaaaaatgtcgaTCAA
AGTCGCCAAGACTTTGAGATGGATAATTACGAGATAAAACGGTTTTTTGG
CCGTGCTGGAGGGCTGAGACGAAATCTCATTGATATGGATGATTACGAAA
TAAAGCGATTTTTCGGTCGTGCCGAGGGCCTAAAACGAAGAAAAGCTTAT
TTCTCAGATCCCTTCAATATGTGGCAAGTTAAGAAAGTTGAAAAGCAGGA
CCTTTGGGAATTCTTTATGTTGACGGGTAAACTTCCATGGGAATGTTTGG
ACGAAATTGGATGGGACTACGATACGGTTGAGTCAATGAGAATTGAGACA
CTGTTTCCCATCCAGGAGAAGGAATTCGAGGACGAAGTAAACCACGACGA
TTTTTTTGATGAGAATTACGAAAGTGAATATTCGTATTACACTGATAGTG
AATCGGAATATGAAACAAACNGATTTTTGTGAATGAAGAAACTAAAAAGC
cattttagtaaatttttcaGTGTCATTTTTTGCTGCTTTTTGAAAAAGAG
TGACGAAGACGCTCCAGAAGCTGattttggTGATGGGAAAGcagcaaaaa
aagtttcctcTGTGATTGAAGCAGAGGAAGCAGcaaagaaagaaaatact
tttgttcagcgaaaaaatgaaaaggaatATTTGAGGCTTAAAGatatatT
TAGAAATTACGGATATGAAAAACTAACCGAGATGAGGGACACCCTTCAAA
AGATGCTTATGAAGCaaaagtttatgaaaaatgtcgaTCAAAGTCGCCAA
GACTTTGAGATGGATAATTACGAGATAAAACGGTTTTTTGGCCGTGCTGG
AGGGCTGAGACGAAATCTCATTGATATGGATGATTACGAAATAAAGCGAT
TTTTCGGTCGTGCCGAGGGCCTAAAACGAAGAAAAGCTTATTTCTCAGAT
CCCTTCAATATGTGGCAAGTTAAGAAAGTTGAAAAGCAGGACCTTTGGGA
ATTCTTTATGTTGACGGGTAAACTTCCATGGGAATGTTTGGACGAAATTG
GATGGGACTACGATACGGTTGAGTCAATGAGAATTGAGACACTGTTTCCC
ATCCAGGAGAAGGAATTCGAGGACGAAGTAAACCACGACGATTTTTTTGA
TGAGAATTACGAAAGTGAATATTCGTATTACACTGATAGTGAATCGGAAT
ATGAAACAAACNGATTTTTGTGAATGAAGAAACTAAAAAGCcattttagt
aaatttttcaGTGTCATTTTTTGCTGCTTTTTGAAAAAGAGTGACGAAGA
CGCTCCAGAAGCTGattttggTGATGGGAAAGcagcaaaaaaagtttcct
cTGTGATTGAAGCAGAGGAAGCAGcaaagaaagaaaatacttttgttcag
cgaaaaaatgaaaaggaatATTTGAGGCTTAAAGatatatTTAGAAATTA
CGGATATGAAAAACTAACCGAGATGAGGGACACCCTTCAAAAGATGCTTA
TGAAGCaaaagtttatgaaaaatgtcgaTCAAAGTCGCCAAGACTTTGAG
ATGGATAATTACGAGATAAAACGGTTTTTTGGCCGTGCTGGAGGGCTGAG
ACGAAATCTCATTGATATGGATGATTACGAAATAAAGCGATTTTTCGGTC
GTGCCGAGGGCCTAAAACGAAGAAAAGCTTATTTCTCAGATCCCTTCAAT
ATGTGGCAAGTTAAGAAAGTTGAAAAGCAGGACCTTTGGGAATTCTTTAT
GTTGACGGGTAAACTTCCATGGGAATGTTTGGACGAAATTGGATGGGACT
ACGATACGGTTGAGTCAATGAGAATTGAGACACTGTTTCCCATCCAGGAG
AAGGAATTCGAGGACGAAGTAAACCACGACGATTTTTTTGATGAGAATTA
CGAAAGTGAATATTCGTATTACACTGATAGTGAATCGGAATATGAAACAA
ACNGATTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061941-exon-scaffold_361-1491911889:1456879..1457790 | TCONS_00061941-exon-scaffold_361-1491911889:1456879..1457790 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1510915933:1456879..1457790 | TCONS_00061941-exon-scaffold_361-1510915933:1456879..1457790 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1575043694:1456879..1457790 | TCONS_00061941-exon-scaffold_361-1575043694:1456879..1457790 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1491911889:1458202..1458321 | TCONS_00061941-exon-scaffold_361-1491911889:1458202..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1510915933:1458202..1458321 | TCONS_00061941-exon-scaffold_361-1510915933:1458202..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1575043694:1458202..1458321 | TCONS_00061941-exon-scaffold_361-1575043694:1458202..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1491911889:1458546..1458788 | TCONS_00061941-exon-scaffold_361-1491911889:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1510915933:1458546..1458788 | TCONS_00061941-exon-scaffold_361-1510915933:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1575043694:1458546..1458788 | TCONS_00061941-exon-scaffold_361-1575043694:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1491911889:1459136..1460011 | TCONS_00061941-exon-scaffold_361-1491911889:1459136..1460011 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1510915933:1459136..1460011 | TCONS_00061941-exon-scaffold_361-1510915933:1459136..1460011 | Clytia hemisphaerica | exon |
| TCONS_00061941-exon-scaffold_361-1575043694:1459136..1460011 | TCONS_00061941-exon-scaffold_361-1575043694:1459136..1460011 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1456879..1460011 + |
Blast
The following BLAST results are available for this feature:
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