TCONS_00061923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061923
Unique NameTCONS_00061923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061923 ID=TCONS_00061923|Name=TCONS_00061923|organism=Clytia hemisphaerica|type=transcript|length=1732bp
ATAGGGTAAGGCGTTATAATGCTTTACTCTCTCTTTCTCTCAGACAATtt
cacaaaataacaaaattgaaagaaaacaaaCCACCAAACAGACCAGATGG
AAGGTTTAGaaatTGGATTGTTCGTGGGCGGTATTTTGGTGACACTGACA
ATGATCATCCTAATCATCAaatcaattatgaaattgaaaCGACCAAAAAG
GGCCTGGGAAGAGGACGAATCAAATAACTTTATTGAACAAACACAAAAAT
CATCAGACGAAAAAGACGGTGATGGTAAAGGAAATCGTCCCAAAATCTTC
ATGAGGGAACATCATTTCCACTTACCACTTTCCTATGAAAAGATTCAGAA
CCAGAAACCATGGAAACACAGAGCTGTACCAACCGTCAGTGTTACTCAGC
ACAGTCCCACATCAGCGAGTGCGCCAACAAACCTTTTGCCTTCATCCTCC
GCTGCTAAACATCATGGAGTATTGAATCAACGGAGAAGATCAATCACCAA
CCAAATGATGGCAGACCTTCACAAACACGGCAAACATGTGATGTATTCAT
CTTTCCACAGTGGAGCAGAATCAGGTGGTGATTCGGGAAGTGAATATCAT
TTAGGACCAAATTTCAGCGACGACGGCTCCTTGACCGCTTCAAGCGTTGA
ACATAACTCAGCTGATGATGGAAAAGCACATTATTTAGATTCAAACGTAC
ACGGAATCAAGAAACGTGTTACTCGCACAAGACGTCTCGGACGCAAAACA
CATCACAGTCCTGTTAAACCTTCGTTCAAGAAAACTGGCAAACTTTTCTT
CGAAGCTGAATACATACGACATGAACGAAAACTAGTTCTAAACATTATAA
AATGCTCTGAATTAAAAATGAAGACGGATATACACCACTCCAACACTTTT
GTGAGAGCTTATTTGGTACCCGGCAAAATTCAAAGACAGCAGACAAAAAT
ACGACGGGAAACTTACGAGCCGATTTTCAATGAATCTTTAGTGTTCACCG
ACCTCGATCAAGTTCAATTACAAAGACATAAATTGAGACTGAAAGTATAT
AACCATTCGAAATTGAAGAAACACGATTTGATAGGCGAGGTGGATATTGC
GTTGATTACTCTGAATACTGATGCAAAAGAAACTTTTGATGCTGATCTGT
TCGTCAAAAAGTCTGAGAACGCAAACGCTTCAATGATGATCTCAATAAGA
CACGAAGCAGCTCTTTCCAAACTACAAGTCAATATTGAAGAAGCCAAAAA
TCTTCCAAAGGCTCATCTGACTGGCCTTAACCCTGACCCATACGTGATTG
TGAAGTTATACAAAGGAGATTCGTGCGAAAAGAAAGAAACGTTACACTTA
CGGAACACGCGTGCTCCCAAATTCCACGAAACATTCCAATTCCAACTAGC
AACAGATTTCGAATATCCTTTAAGCGTTTTCTCATTGGTTGTAACTATAG
CAAATAAAGTTCTGATTGGTCGAGACGAAGTATTAGGTCACGTGATTTTT
AGCCTGGATTCGCCTCAACATTCAGCCATCACACACTGGAGGAATGTGCA
AACAGAACCTCATAAAACTCACTCACGATGGCATTCCTTGATTGACCCGG
AAGATGTTTAGTGGCATTTAACTCAGAgagtcaaaatcattttaaatatC
ATCTAGATCTAGAAtctattttctttgtttcaaatGTTAAGTTCAAATGA
ATgttaaaacttttaaagaaaatatttcgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_361:1085706..1091283+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061923 ID=TCONS_00061923|Name=TCONS_00061923|organism=Clytia hemisphaerica|type=transcript|length=5578bp|location=Sequence derived from alignment at scaffold_361:1085706..1091283+ (Clytia hemisphaerica)
ATAGGGTAAGGCGTTATAATGCTTTACTCTCTCTTTCTCTCAGACAATtt
cacaaaataacaaaattgaaagaaaacaaaCCACCAAACAGACCAGATGG
AAGGTTTAGGTAAGAATTATCTCATATCAGAGTGCTATCCTGTGACctga
tttatatttttattttgacacaTCCGTCTCCTAGAAGGTTTTTTTCGGCA
AATTTGGAGTCCCACCGTCTCTATATTACAGGAACCTCAGAATGAAGAAG
AACTCTGCCAAATAAAATATACTCAAATAAAGTCCCCTTCTGTGAATTTC
AAACATCctcaataattctttttttattcaagaaatTGGATTGTTCGTGG
GCGGTATTTTGGTGACACTGACAATGATCATCCTAATCATCAaatcaatt
atgaaattgaaaCGACCAAAAAGGGCCTGGGAAGAGGACGAATCAAATAA
CTTTATTGAACAAACACAAAAATCATCAGACGAAAAAGACGGTGATGGTA
AAGGAAATCGTCCCAAAATCTTCATGAGGGAACATCATTTCCACTTACCA
CTTTCCTATGAAAAGATTCAGAACCAGAAACCATGGAAACACAGAGCTGT
ACCAACCGTCAGTGTTACTCAGGTAAGTCCTCTCTGCTTTGACCTGGTAG
TTTGATCAGAGATATCACGTACACCGCGGTACCACCCAGAGACGATAGAT
ACCAATACACGAGTAAAAgtaactacagttgacgctctgtAATTCAACGt
tttactattcgatacgctcgattattcgataatattgaaagacACCGTCa
ataagaaactctcataaatgacGCACTTTTATTCGATACGTTCCATtttt
tcgataatattgaaagacaccgtcaacaagaaactgtcataaacgacgct
ctactattcgatacgctccttattcgatgaaaattctccttaaaaatcga
actaaagagagagagtcaactgtagtcTTTGGTTGATGGCCTTTAGACTA
AATATTCATAGTTGCTTTTTCTCACATACAGCATTCTATAAAAACCTTTG
GCACATTTTAGCACAGTCCCACATCAGCGAGTGCGCCAACAAACCTTTTG
CCTTCATCCTCCGCTGCTAAACATCATGGAGTATTGAATCAACGGAGAAG
ATCAATCACCAACCAAATGATGGCAGACCTTCACAAACACGGCAAACATG
GTATGGTGCAATCCTTTTGATACATCACTGACCATTTTCTCTTTGTCTAT
TAATTGTACGCTTTACAGGTGTAATTTCGCTAAAAATCGAATCGACGCTA
AGTCCTAGCGGATAGGTTGTCCGCTACCAATCCTTTTTGTCTAActcagc
tggcacataacgttgttttaacgtttaaataacgttcacaacgtcatata
acgttaaatgaacgttgaaacaacgttgtgtgccagctgggaaatgTCAT
TGCCCCGGGTCTGTATCacattcataatggcagatatgAGCCGGAATATG
ACCTTTTTTGGATCCGTCGGTAATTAAATCTTAGATCAAAGCTGAAGAAC
CCATTCTATTCGAACCATTCTATTTTCAAGGCAAAAGTCTCCAACCACTC
TTCGGTGGTCACTCTACTTATAAGAGGAAAAAATTTGACCAGGTAATATG
GGGCACCAGGCACCACGTTAGCGTTGAAAAGATTAGAACTGgtttttatt
ctaaaaaatcGCAATGGTTTTCATACTAACTAAGGAACATTTCGAAGAtt
gcttttctttttcgttttccAGTGATGTATTCATCTTTCCACAGTGGAGC
AGAATCAGGTGGTGATTCGGGAAGTGAATATCATTTAGGACCAAATTTCA
GCGACGACGGCTCCTTGACCGCTTCAAGCGTTGAACATAACTCAGCTGAT
GATGGAAAAGCACATTATTTAGATTCAAACGTACACGGAATCAAGAAACG
TGTTACTCGCACAAGACGTCTCGGACGCAAAACACATCACAGTCCTGTTA
AACCTTCGTTCAAGAAAACTGGCAAACTTTTCTTCGAAGCTGAATACATA
CGACATGAACGAAAACTAGTTCTAAACATTATAAAATGCTCTGAATTAAA
AATGAAGACGGATATACACCACTCCAACACTTTTGTGAGAGCTTATTTGG
TACCCGGCAAAATTCAAAGACAGCAGACAAAAATACGACGGGAAACTTAC
GAGCCGATTTTCAATGAATCTTTAGTGTTCACCGACCTCGATCAAGTTCA
ATTACAAAGACATAAATTGAGACTGAAAGTATATAACCATTCGAAATTGA
AGAAACACGATTTGATAGGCGAGGTGGATATTGCGTTGATTAATCTGAAT
ACTGATGCAAAAGAAACTTTTGATGCTGATCTCTTCGTCAAAAAGTCTGA
GGTAAATACATTGCTTTTCAATACTACTGTATCCCTGCAGCGATTTTAGT
AGGAACGTTAGAGTTTATACTAANAAAAGTGTATAACCATTCGAAATTGA
AGAAACACGATTTGATAGGCGAGGTGGATATTGCGTTGATTACTCTGAAT
ACTGATGCAAAAGAAACTTTTGATGCTGATCTGTTCGTCAAAAAGTCTGA
GGTaaatacttttttctgattcaaTACATTGTGTTTCAATACTCCTGTCT
CCCTACAGCGATTTTAGGAAAATTAGAGTTTATACTAAATGCAATATAAA
CATAATATGAGGGTCCCATCCCTGTTTGACAACACAGTGTCTCCTGGGCC
TGggcttttcaaagaaaaaatgtaaactCTAAAGATTGTCTATGCAATTC
AAGGTTTTCTAATCTTTCCCCTTATGAATGGAAATGCACTTAAAGTTGGA
GGGTAGGACTTTTTCTTTACACTGATTAGTTTGTATtttgacaaaaacaa
aagatatgAAGATAATAAATTTGatacgtaatagttatcggacataCCAA
AAGTTTATATTCTATCTTGGTCCTTTCATTTTAGAACGCAAACGCTTCAA
TGATGATCTCAATAAGACACGAAGCAGCTCTTTCCAAACTACAAGTCAAT
ATTGAAGAAGCCAAAAATCTTCCAAAGGCTCATCTGACTGGCCTTAACCC
TGGTAAAGCTTTTTAACTTATTTTGGTTCTTCTTCGATGCCAGTTTCTTC
GAGAATCCGTTTTAGTCCCTTTAAGATTGTTTAAGGAGTGAGGTAGTAGG
TACACGTCATCCTGCAAACCTAGCGACCTGGGCCCCAATGCTACATTATT
TGAACTGCACTCGTTAACAAATTTCCACCTTTCGATTATTGAACTGATAA
ACAACATACGTTCGAGAATCTTTGGAAATAAACAGTGTGTTAGTATGCCA
AGTCAATGTTAGTGGTAGAAAGAGATATTCTCTTTCCCCAGTTGGGCACA
CAacgtagcctatactagacgtcacccgcgtttttttacgcaattaatgt
ctattccactttgcgactttttcgaatgttttgagcctgggttttcgggc
tctaaacattcgattttttgacgtcacttttaactttcgaagctcctgca
gtagcaaaataatcgaatttgcgtcaaataTGCCGGCCATTCTGTAGCAA
TAATCAATCTTTCgaatatttagttcaatccaatccttaatgccgatatt
tagttcaatccaattcccatatttagttcaatctctatatttcattcaat
ccaatccctatatttcattcaatccaatccctatatttcattcaatccaa
tccctatatttcattcaatccaatccctatattttattcaatccaatccc
catatttagttcaatccctgtatttcattcaatccaatcccgatatttta
ttcaatccaatcccgatattttattcaatccaatcccgatattttattca
atccaatcccgatttttcattcaatccaatcccgatatttcattcaatct
tttttttcaatcttttttttaattcaatcttttttcattcaatctttttt
ttattcaatcttttttttaattcaatcttttttttattcaatcttttttt
ttcaatcttttttttttattcaatctttttttttattcaatctttttttt
cattcaatcttcCTGGGTACGAGCGTAATTATTATCTCCCTAATGTAGTT
TCCACATGGTTTGAAGTGATTTAAGACGTAAAAGTTTAGTAGGATCTGAC
TAAAGTATGTTAGGAGATCGCACCAGACTTAGAGCATCCGGTGGTGCTGG
TGCTTCTTCTGTTGTTAGTGAAGAAGCTGGTAGCGGTGTTATTTCTGAAG
ATGATGGAGAACCAATGATTCGTCAGAAGATTTTGACTGCCCTGAAGGAC
AAATTTCCACTTTTAGGGCagaatgactttgattttgTCGAGGTACGACG
TAAAGAGATAACAAAAATGAGCTTGGCAACAGGCATGGAGTATAGTTTCA
ATGTAGTTAAGAAACTTGCCGGTCAAGGACAGCTATATGTGCAAGTCAAA
TCAAATCGTGGAACATTCCTTCATGATGATAACAGTTCTGATGATGAAAA
GGACGAGCTTGCTTTACCACCAGTAGGCTGGAAGCAAAAGAATTGTCCTG
ATCCTTTTGAGCAATTGGGCTCAGATAGGAGTGCTGAAGGTAAATCACAA
AATGCAATTGTTATAAAGGAGGAAAAGGAAAACGATGACACCAATCAAAA
GCACAAAGTGGAACAAGTAGACACCAAAGACAAAGAAGAAGTAAAAATTC
AACTCAGCCTGAATCCTGCTGTTGAAGCCGCCCTAAACGAAATTATTCAA
CAAAAACTTTGTGATCCAACAGAAATCATGCGATTTCTTCAAATGAAATT
GCAAGTAGGTAGGGAACTAGATATAACACATATTGACCTTCCAGATGGCG
GAGGAGAGTTTGGAGACACCAATTACCTTTCTATAGACAGAGATCAAATC
TTACAGTCAACTTTCTCAGAGATGAAAGATNACAACGTTGCTTCGACGTT
TATTCAACGTTcacaacgttagatgaacattgaaacaacgttgtctgTCA
GCTGGTTCTGCATTTAAAGGATATCCTCCAAGAACACCAAGATAGGctta
attgttttctttatatttttcaacattataGACCCATACGTGATTGTGAA
GTTATACAAAGGAGATTCGTGCGAAAAGAAAGAAACGTTACACTTACGGA
ACACGCGTGCTCCCAAATTCCACGAAACATTCCAATTCCAACTAGCAACA
GATTTCGAATATCCTTTAAGCGTTTTCTCATTGGTTGTAACTATAGCAAA
TAAAGTTCTGATTGGTCGAGACGAAGTATTAGGTCACGTGATTTTTAGCC
TGGATTCGCCTCAACATTCAGCCATCACACACTGGAGGAATGTGCAAACA
GAACCTCATAAAACTCACTCACGATGGCATTCCTTGATTGACCCGGAAGA
TGTTTAGTGGCATTTAACTCAGAgagtcaaaatcattttaaatatCATCT
AGATCTAGAAtctattttctttgtttcaaatGTTAAGTTCAAATGAATgt
taaaacttttaaagaaaatatttcgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038825XLOC_038825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061923-exon-scaffold_361-1491911889:1085706..1085814TCONS_00061923-exon-scaffold_361-1491911889:1085706..1085814Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1085706..1085814TCONS_00061923-exon-scaffold_361-1510915933:1085706..1085814Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1085706..1085814TCONS_00061923-exon-scaffold_361-1575043694:1085706..1085814Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1086038..1086327TCONS_00061923-exon-scaffold_361-1491911889:1086038..1086327Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1086038..1086327TCONS_00061923-exon-scaffold_361-1510915933:1086038..1086327Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1086038..1086327TCONS_00061923-exon-scaffold_361-1575043694:1086038..1086327Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1086767..1086905TCONS_00061923-exon-scaffold_361-1491911889:1086767..1086905Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1086767..1086905TCONS_00061923-exon-scaffold_361-1510915933:1086767..1086905Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1086767..1086905TCONS_00061923-exon-scaffold_361-1575043694:1086767..1086905Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1087478..1088028TCONS_00061923-exon-scaffold_361-1491911889:1087478..1088028Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1087478..1088028TCONS_00061923-exon-scaffold_361-1510915933:1087478..1088028Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1087478..1088028TCONS_00061923-exon-scaffold_361-1575043694:1087478..1088028Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1088229..1088306TCONS_00061923-exon-scaffold_361-1491911889:1088229..1088306Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1088229..1088306TCONS_00061923-exon-scaffold_361-1510915933:1088229..1088306Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1088229..1088306TCONS_00061923-exon-scaffold_361-1575043694:1088229..1088306Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1088690..1088807TCONS_00061923-exon-scaffold_361-1491911889:1088690..1088807Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1088690..1088807TCONS_00061923-exon-scaffold_361-1510915933:1088690..1088807Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1088690..1088807TCONS_00061923-exon-scaffold_361-1575043694:1088690..1088807Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1491911889:1090837..1091283TCONS_00061923-exon-scaffold_361-1491911889:1090837..1091283Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1510915933:1090837..1091283TCONS_00061923-exon-scaffold_361-1510915933:1090837..1091283Clytia hemisphaericaexon
TCONS_00061923-exon-scaffold_361-1575043694:1090837..1091283TCONS_00061923-exon-scaffold_361-1575043694:1090837..1091283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1085706..1091283 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.542013	0	0	0	0.587431	0.632343	1.74097	1.14832	1.00507	1.26159	0.874258	2.1459	0.146697	0.328161	1.10694	1.36605	0.729452	1.55565	0.834714	1.47981	0.981598	0.29496	0.234862	0.929459	0	0	0.622861	0.545423	0.0775657	0.11854
Blast
[Close]
BLAST of TCONS_00061923 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.511e-32
Identity = 80/270 (29.63%), Postives = 144/270 (53.33%), Query Frame = 1 
Query:  787 GKLFFEAEYIRHERKLVLNIIKCSELKMKTDIHHSNTFVRAYLVPGKIQRQQTKIRRETYEPIFNESLVFTDLDQVQLQRHKLRLKVYNHSKLKKHDLIGEVDIALITLNTDAKETFDADL-FVKKSENANASMMISIRHEAALSKLQVNIEEAKNLPKAHLTGLNPDPYVIVKL-YKGDSCEKKETLHLRNTRAPKFHETFQFQLATDFEYPLSVFSLVVTIANKVLIGRDEVLGHVIFSLDSPQHSAITHWRNVQTEPHKTHSRWHSL 1590
            G++ F   Y   E  L + I+K  EL  K     S+ FV+ YL+P K  + +TK++R+   P +NE+ +F      ++ +  L L+V ++ +  ++D IGEV I L  ++    +TF  DL        +   +++S+ +  + + + VNI +A+NL KA   G   DPYV V L YK    EKK+T+ ++    P F+E+F F + T+    L   ++++T+ +K  + R++V+G +  S  S     + HW+++   P +  ++WH L
Sbjct:  137 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNL-KAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTE---KLRETTIIITVMDKDKLSRNDVIGKIYLSWKS-GPGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00061923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT71.511e-3229.63Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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