TCONS_00061921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061921
Unique NameTCONS_00061921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061921 ID=TCONS_00061921|Name=TCONS_00061921|organism=Clytia hemisphaerica|type=transcript|length=1747bp
GTCGGATGTATTAAAATAGGGTAAGGCGTTATAATGCTTTACTCTCTCTT
TCTCTCAGACAATttcacaaaataacaaaattgaaagaaaacaaaCCACC
AAACAGACCAGATGGAAGGTTTAGaaatTGGATTGTTCGTGGGCGGTATT
TTGGTGACACTGACAATGATCATCCTAATCATCAaatcaattatgaaatt
gaaaCGACCAAAAAGGGCCTGGGAAGAGGACGAATCAAATAACTTTATTG
AACAAACACAAAAATCATCAGACGAAAAAGACGGTGATGGTAAAGGAAAT
CGTCCCAAAATCTTCATGAGGGAACATCATTTCCACTTACCACTTTCCTA
TGAAAAGATTCAGAACCAGAAACCATGGAAACACAGAGCTGTACCAACCG
TCAGTGTTACTCAGCACAGTCCCACATCAGCGAGTGCGCCAACAAACCTT
TTGCCTTCATCCTCCGCTGCTAAACATCATGGAGTATTGAATCAACGGAG
AAGATCAATCACCAACCAAATGATGGCAGACCTTCACAAACACGGCAAAC
ATGTGATGTATTCATCTTTCCACAGTGGAGCAGAATCAGGTGGTGATTCG
GGAAGTGAATATCATTTAGGACCAAATTTCAGCGACGACGGCTCCTTGAC
CGCTTCAAGCGTTGAACATAACTCAGCTGATGATGGAAAAGCACATTATT
TAGATTCAAACGTACACGGAATCAAGAAACGTGTTACTCGCACAAGACGT
CTCGGACGCAAAACACATCACAGTCCTGTTAAACCTTCGTTCAAGAAAAC
TGGCAAACTTTTCTTCGAAGCTGAATACATACGACATGAACGAAAACTAG
TTCTAAACATTATAAAATGCTCTGAATTAAAAATGAAGACGGATATACAC
CACTCCAACACTTTTGTGAGAGCTTATTTGGTACCCGGCAAAATTCAAAG
ACAGCAGACAAAAATACGACGGGAAACTTACGAGCCGATTTTCAATGAAT
CTTTAGTGTTCACCGACCTCGATCAAGTTCAATTACAAAGACATAAATTG
AGACTGAAAGTATATAACCATTCGAAATTGAAGAAACACGATTTGATAGG
CGAGGTGGATATTGCGTTGATTAATCTGAATACTGATGCAAAAGAAACTT
TTGATGCTGATCTCTTCGTCAAAAAGTCTGAGAACGCAAACGCTTCAATG
ATGATCTCAATAAGACACGAAGCAGCTCTTTCCAAACTACAAGTCAATAT
TGAAGAAGCCAAAAATCTTCCAAAGGCTCATCTGACTGGCCTTAACCCTG
ACCCATACGTGATTGTGAAGTTATACAAAGGAGATTCGTGCGAAAAGAAA
GAAACGTTACACTTACGGAACACGCGTGCTCCCAAATTCCACGAAACATT
CCAATTCCAACTAGCAACAGATTTCGAATATCCTTTAAGCGTTTTCTCAT
TGGTTGTAACTATAGCAAATAAAGTTCTGATTGGTCGAGACGAAGTATTA
GGTCACGTGATTTTTAGCCTGGATTCGCCTCAACATTCAGCCATCACACA
CTGGAGGAATGTGCAAACAGAACCTCATAAAACTCACTCACGATGGCATT
CCTTGATTGACCCGGAAGATGTTTAGTGGCATTTAACTCAGAgagtcaaa
atcattttaaatatCATCTAGATCTAGAAtctattttctttgtttcaaat
GTTAAGTTCAAATGAATgttaaaacttttaaagaaaatatttcgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_361:1085691..1091283+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061921 ID=TCONS_00061921|Name=TCONS_00061921|organism=Clytia hemisphaerica|type=transcript|length=5593bp|location=Sequence derived from alignment at scaffold_361:1085691..1091283+ (Clytia hemisphaerica)
GTCGGATGTATTAAAATAGGGTAAGGCGTTATAATGCTTTACTCTCTCTT
TCTCTCAGACAATttcacaaaataacaaaattgaaagaaaacaaaCCACC
AAACAGACCAGATGGAAGGTTTAGGTAAGAATTATCTCATATCAGAGTGC
TATCCTGTGACctgatttatatttttattttgacacaTCCGTCTCCTAGA
AGGTTTTTTTCGGCAAATTTGGAGTCCCACCGTCTCTATATTACAGGAAC
CTCAGAATGAAGAAGAACTCTGCCAAATAAAATATACTCAAATAAAGTCC
CCTTCTGTGAATTTCAAACATCctcaataattctttttttattcaagaaa
tTGGATTGTTCGTGGGCGGTATTTTGGTGACACTGACAATGATCATCCTA
ATCATCAaatcaattatgaaattgaaaCGACCAAAAAGGGCCTGGGAAGA
GGACGAATCAAATAACTTTATTGAACAAACACAAAAATCATCAGACGAAA
AAGACGGTGATGGTAAAGGAAATCGTCCCAAAATCTTCATGAGGGAACAT
CATTTCCACTTACCACTTTCCTATGAAAAGATTCAGAACCAGAAACCATG
GAAACACAGAGCTGTACCAACCGTCAGTGTTACTCAGGTAAGTCCTCTCT
GCTTTGACCTGGTAGTTTGATCAGAGATATCACGTACACCGCGGTACCAC
CCAGAGACGATAGATACCAATACACGAGTAAAAgtaactacagttgacgc
tctgtAATTCAACGttttactattcgatacgctcgattattcgataatat
tgaaagacACCGTCaataagaaactctcataaatgacGCACTTTTATTCG
ATACGTTCCATtttttcgataatattgaaagacaccgtcaacaagaaact
gtcataaacgacgctctactattcgatacgctccttattcgatgaaaatt
ctccttaaaaatcgaactaaagagagagagtcaactgtagtcTTTGGTTG
ATGGCCTTTAGACTAAATATTCATAGTTGCTTTTTCTCACATACAGCATT
CTATAAAAACCTTTGGCACATTTTAGCACAGTCCCACATCAGCGAGTGCG
CCAACAAACCTTTTGCCTTCATCCTCCGCTGCTAAACATCATGGAGTATT
GAATCAACGGAGAAGATCAATCACCAACCAAATGATGGCAGACCTTCACA
AACACGGCAAACATGGTATGGTGCAATCCTTTTGATACATCACTGACCAT
TTTCTCTTTGTCTATTAATTGTACGCTTTACAGGTGTAATTTCGCTAAAA
ATCGAATCGACGCTAAGTCCTAGCGGATAGGTTGTCCGCTACCAATCCTT
TTTGTCTAActcagctggcacataacgttgttttaacgtttaaataacgt
tcacaacgtcatataacgttaaatgaacgttgaaacaacgttgtgtgcca
gctgggaaatgTCATTGCCCCGGGTCTGTATCacattcataatggcagat
atgAGCCGGAATATGACCTTTTTTGGATCCGTCGGTAATTAAATCTTAGA
TCAAAGCTGAAGAACCCATTCTATTCGAACCATTCTATTTTCAAGGCAAA
AGTCTCCAACCACTCTTCGGTGGTCACTCTACTTATAAGAGGAAAAAATT
TGACCAGGTAATATGGGGCACCAGGCACCACGTTAGCGTTGAAAAGATTA
GAACTGgtttttattctaaaaaatcGCAATGGTTTTCATACTAACTAAGG
AACATTTCGAAGAttgcttttctttttcgttttccAGTGATGTATTCATC
TTTCCACAGTGGAGCAGAATCAGGTGGTGATTCGGGAAGTGAATATCATT
TAGGACCAAATTTCAGCGACGACGGCTCCTTGACCGCTTCAAGCGTTGAA
CATAACTCAGCTGATGATGGAAAAGCACATTATTTAGATTCAAACGTACA
CGGAATCAAGAAACGTGTTACTCGCACAAGACGTCTCGGACGCAAAACAC
ATCACAGTCCTGTTAAACCTTCGTTCAAGAAAACTGGCAAACTTTTCTTC
GAAGCTGAATACATACGACATGAACGAAAACTAGTTCTAAACATTATAAA
ATGCTCTGAATTAAAAATGAAGACGGATATACACCACTCCAACACTTTTG
TGAGAGCTTATTTGGTACCCGGCAAAATTCAAAGACAGCAGACAAAAATA
CGACGGGAAACTTACGAGCCGATTTTCAATGAATCTTTAGTGTTCACCGA
CCTCGATCAAGTTCAATTACAAAGACATAAATTGAGACTGAAAGTATATA
ACCATTCGAAATTGAAGAAACACGATTTGATAGGCGAGGTGGATATTGCG
TTGATTAATCTGAATACTGATGCAAAAGAAACTTTTGATGCTGATCTCTT
CGTCAAAAAGTCTGAGGTAAATACATTGCTTTTCAATACTACTGTATCCC
TGCAGCGATTTTAGTAGGAACGTTAGAGTTTATACTAANAAAAGTGTATA
ACCATTCGAAATTGAAGAAACACGATTTGATAGGCGAGGTGGATATTGCG
TTGATTACTCTGAATACTGATGCAAAAGAAACTTTTGATGCTGATCTGTT
CGTCAAAAAGTCTGAGGTaaatacttttttctgattcaaTACATTGTGTT
TCAATACTCCTGTCTCCCTACAGCGATTTTAGGAAAATTAGAGTTTATAC
TAAATGCAATATAAACATAATATGAGGGTCCCATCCCTGTTTGACAACAC
AGTGTCTCCTGGGCCTGggcttttcaaagaaaaaatgtaaactCTAAAGA
TTGTCTATGCAATTCAAGGTTTTCTAATCTTTCCCCTTATGAATGGAAAT
GCACTTAAAGTTGGAGGGTAGGACTTTTTCTTTACACTGATTAGTTTGTA
TtttgacaaaaacaaaagatatgAAGATAATAAATTTGatacgtaatagt
tatcggacataCCAAAAGTTTATATTCTATCTTGGTCCTTTCATTTTAGA
ACGCAAACGCTTCAATGATGATCTCAATAAGACACGAAGCAGCTCTTTCC
AAACTACAAGTCAATATTGAAGAAGCCAAAAATCTTCCAAAGGCTCATCT
GACTGGCCTTAACCCTGGTAAAGCTTTTTAACTTATTTTGGTTCTTCTTC
GATGCCAGTTTCTTCGAGAATCCGTTTTAGTCCCTTTAAGATTGTTTAAG
GAGTGAGGTAGTAGGTACACGTCATCCTGCAAACCTAGCGACCTGGGCCC
CAATGCTACATTATTTGAACTGCACTCGTTAACAAATTTCCACCTTTCGA
TTATTGAACTGATAAACAACATACGTTCGAGAATCTTTGGAAATAAACAG
TGTGTTAGTATGCCAAGTCAATGTTAGTGGTAGAAAGAGATATTCTCTTT
CCCCAGTTGGGCACACAacgtagcctatactagacgtcacccgcgttttt
ttacgcaattaatgtctattccactttgcgactttttcgaatgttttgag
cctgggttttcgggctctaaacattcgattttttgacgtcacttttaact
ttcgaagctcctgcagtagcaaaataatcgaatttgcgtcaaataTGCCG
GCCATTCTGTAGCAATAATCAATCTTTCgaatatttagttcaatccaatc
cttaatgccgatatttagttcaatccaattcccatatttagttcaatctc
tatatttcattcaatccaatccctatatttcattcaatccaatccctata
tttcattcaatccaatccctatatttcattcaatccaatccctatatttt
attcaatccaatccccatatttagttcaatccctgtatttcattcaatcc
aatcccgatattttattcaatccaatcccgatattttattcaatccaatc
ccgatattttattcaatccaatcccgatttttcattcaatccaatcccga
tatttcattcaatcttttttttcaatcttttttttaattcaatctttttt
cattcaatcttttttttattcaatcttttttttaattcaatctttttttt
attcaatctttttttttcaatcttttttttttattcaatcttttttttta
ttcaatcttttttttcattcaatcttcCTGGGTACGAGCGTAATTATTAT
CTCCCTAATGTAGTTTCCACATGGTTTGAAGTGATTTAAGACGTAAAAGT
TTAGTAGGATCTGACTAAAGTATGTTAGGAGATCGCACCAGACTTAGAGC
ATCCGGTGGTGCTGGTGCTTCTTCTGTTGTTAGTGAAGAAGCTGGTAGCG
GTGTTATTTCTGAAGATGATGGAGAACCAATGATTCGTCAGAAGATTTTG
ACTGCCCTGAAGGACAAATTTCCACTTTTAGGGCagaatgactttgattt
tgTCGAGGTACGACGTAAAGAGATAACAAAAATGAGCTTGGCAACAGGCA
TGGAGTATAGTTTCAATGTAGTTAAGAAACTTGCCGGTCAAGGACAGCTA
TATGTGCAAGTCAAATCAAATCGTGGAACATTCCTTCATGATGATAACAG
TTCTGATGATGAAAAGGACGAGCTTGCTTTACCACCAGTAGGCTGGAAGC
AAAAGAATTGTCCTGATCCTTTTGAGCAATTGGGCTCAGATAGGAGTGCT
GAAGGTAAATCACAAAATGCAATTGTTATAAAGGAGGAAAAGGAAAACGA
TGACACCAATCAAAAGCACAAAGTGGAACAAGTAGACACCAAAGACAAAG
AAGAAGTAAAAATTCAACTCAGCCTGAATCCTGCTGTTGAAGCCGCCCTA
AACGAAATTATTCAACAAAAACTTTGTGATCCAACAGAAATCATGCGATT
TCTTCAAATGAAATTGCAAGTAGGTAGGGAACTAGATATAACACATATTG
ACCTTCCAGATGGCGGAGGAGAGTTTGGAGACACCAATTACCTTTCTATA
GACAGAGATCAAATCTTACAGTCAACTTTCTCAGAGATGAAAGATNACAA
CGTTGCTTCGACGTTTATTCAACGTTcacaacgttagatgaacattgaaa
caacgttgtctgTCAGCTGGTTCTGCATTTAAAGGATATCCTCCAAGAAC
ACCAAGATAGGcttaattgttttctttatatttttcaacattataGACCC
ATACGTGATTGTGAAGTTATACAAAGGAGATTCGTGCGAAAAGAAAGAAA
CGTTACACTTACGGAACACGCGTGCTCCCAAATTCCACGAAACATTCCAA
TTCCAACTAGCAACAGATTTCGAATATCCTTTAAGCGTTTTCTCATTGGT
TGTAACTATAGCAAATAAAGTTCTGATTGGTCGAGACGAAGTATTAGGTC
ACGTGATTTTTAGCCTGGATTCGCCTCAACATTCAGCCATCACACACTGG
AGGAATGTGCAAACAGAACCTCATAAAACTCACTCACGATGGCATTCCTT
GATTGACCCGGAAGATGTTTAGTGGCATTTAACTCAGAgagtcaaaatca
ttttaaatatCATCTAGATCTAGAAtctattttctttgtttcaaatGTTA
AGTTCAAATGAATgttaaaacttttaaagaaaatatttcgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038825XLOC_038825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061921-exon-scaffold_361-1491911889:1085691..1085814TCONS_00061921-exon-scaffold_361-1491911889:1085691..1085814Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1085691..1085814TCONS_00061921-exon-scaffold_361-1510915933:1085691..1085814Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1085691..1085814TCONS_00061921-exon-scaffold_361-1575043694:1085691..1085814Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1491911889:1086038..1086327TCONS_00061921-exon-scaffold_361-1491911889:1086038..1086327Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1086038..1086327TCONS_00061921-exon-scaffold_361-1510915933:1086038..1086327Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1086038..1086327TCONS_00061921-exon-scaffold_361-1575043694:1086038..1086327Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1491911889:1086767..1086905TCONS_00061921-exon-scaffold_361-1491911889:1086767..1086905Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1086767..1086905TCONS_00061921-exon-scaffold_361-1510915933:1086767..1086905Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1086767..1086905TCONS_00061921-exon-scaffold_361-1575043694:1086767..1086905Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1491911889:1087478..1088106TCONS_00061921-exon-scaffold_361-1491911889:1087478..1088106Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1087478..1088106TCONS_00061921-exon-scaffold_361-1510915933:1087478..1088106Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1087478..1088106TCONS_00061921-exon-scaffold_361-1575043694:1087478..1088106Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1491911889:1088690..1088807TCONS_00061921-exon-scaffold_361-1491911889:1088690..1088807Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1088690..1088807TCONS_00061921-exon-scaffold_361-1510915933:1088690..1088807Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1088690..1088807TCONS_00061921-exon-scaffold_361-1575043694:1088690..1088807Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1491911889:1090837..1091283TCONS_00061921-exon-scaffold_361-1491911889:1090837..1091283Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1510915933:1090837..1091283TCONS_00061921-exon-scaffold_361-1510915933:1090837..1091283Clytia hemisphaericaexon
TCONS_00061921-exon-scaffold_361-1575043694:1090837..1091283TCONS_00061921-exon-scaffold_361-1575043694:1090837..1091283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1085691..1091283 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76384	2.45189	0.914135	0.485498	0.858601	0.689607	5.33044	7.94305	4.01597	4.19503	2.21814	1.91054	2.22546	2.12229	2.47076	2.01758	1.55111	1.67578	2.14764	0.584621	0.286243	1.50452	1.20112	0.275233	3.14535	2.65242	0	0	0	1.38248e-06
Blast
[Close]
BLAST of TCONS_00061921 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.394e-32
Identity = 80/270 (29.63%), Postives = 144/270 (53.33%), Query Frame = 1 
Query:  802 GKLFFEAEYIRHERKLVLNIIKCSELKMKTDIHHSNTFVRAYLVPGKIQRQQTKIRRETYEPIFNESLVFTDLDQVQLQRHKLRLKVYNHSKLKKHDLIGEVDIALINLNTDAKETFDADL-FVKKSENANASMMISIRHEAALSKLQVNIEEAKNLPKAHLTGLNPDPYVIVKL-YKGDSCEKKETLHLRNTRAPKFHETFQFQLATDFEYPLSVFSLVVTIANKVLIGRDEVLGHVIFSLDSPQHSAITHWRNVQTEPHKTHSRWHSL 1605
            G++ F   Y   E  L + I+K  EL  K     S+ FV+ YL+P K  + +TK++R+   P +NE+ +F      ++ +  L L+V ++ +  ++D IGEV I L  ++    +TF  DL        +   +++S+ +  + + + VNI +A+NL KA   G   DPYV V L YK    EKK+T+ ++    P F+E+F F + T+    L   ++++T+ +K  + R++V+G +  S  S     + HW+++   P +  ++WH L
Sbjct:  137 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNL-KAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTE---KLRETTIIITVMDKDKLSRNDVIGKIYLSWKS-GPGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00061921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT71.394e-3229.63Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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