|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061912 ID=TCONS_00061912|Name=TCONS_00061912|organism=Clytia hemisphaerica|type=transcript|length=2716bpRun BLAST on NCBI transcript from alignment at scaffold_361:947810..952430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061912 ID=TCONS_00061912|Name=TCONS_00061912|organism=Clytia hemisphaerica|type=transcript|length=4621bp|location=Sequence derived from alignment at scaffold_361:947810..952430+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061912 vs. Swiss-Prot (Human)
Match: GLT13 (Polypeptide N-acetylgalactosaminyltransferase 13 OS=Homo sapiens GN=GALNT13 PE=2 SV=2) HSP 1 Score: 398.667 bits (1023), Expect = 3.449e-127 Identity = 215/513 (41.91%), Postives = 309/513 (60.23%), Query Frame = 3
Query: 390 FNELSSSKISLERAIPDNRVDACFNVKYPSDLPTASVIIIFYNEAWSTLLRTIQTVITRSPPQFLYEIILVDDASLKAPDEPYPHLAQKLEDYVDRMP-KLKLIRSPKRVGLTQARLIGADNAQGDVLVFLDSHCEATYGWLEPMLARLQENRRMAVVPSIEVIAWKNFQYLRSKGSFSRGIFRWDLMFNWGPLPKHERERRKTE-AYPIKSPTMAGGLFAMERKFFFESGAYDRQLTYWGGENVEISFRLWMCADGIEILPCSRVGHVFREHPPYVSPPGS---TDHNSIRVAEVWLDEFKEIFXXXXXXXXXXGSTDHNSIRVAEVWLDEFKEIFYSSRTKLKPEMGGDVSDRKALRERLQCKSFKWYLQNIIPELEVPDRYPYARGDIMNLDAKFCLDTLGQKDGGAPGLYTCHKLGANEFFIYTKLREIRHDNLCLDLNDHSDSTKAKLWGCHRQKGNQEWLHEKVGEGGLLRNSAHNRCLESLGQQ---VVVRQCDKNNRKQLWVFES 1904
FN ++S I+L R++PD R++ C YP +LP SV+I+F+NEAWSTLLRT+ +VI RSP L E+ILVDDAS + L LE+YV + +K+IR +R GL +ARL GA ++G V+ FLD+HCE T GWLEP+LAR++E+R+ V P I+VI+ F+Y+ + + G F W L F W P+P+ E +RRK + P+++PTMAGGLF+++R +F E G YD + WGGEN+E+SFR+W C +EI+ CS VGHVFR+ PY P G+ + N+ R+AEVW+DEFK+ FY I V +D GDVS RK LRE L+CK F WYL+NI P+ ++P RY Y+ G+I N++ CLD +G+K+ G++ CH +G N+ F YT +EIR D+LCLD++ + + CH +GNQ W ++ E LR+ N+CL+ ++ V Q +R Q W+ +
Sbjct: 83 FNLMASDLIALNRSLPDVRLEGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASER------DFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYM-AGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYI---------------ISPGVVKVDY-----------------GDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRY-YSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGP--VIMLKCHHMRGNQLWEYD--AERLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRN 551 The following BLAST results are available for this feature:
BLAST of TCONS_00061912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.