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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061890 ID=TCONS_00061890|Name=TCONS_00061890|organism=Clytia hemisphaerica|type=transcript|length=1110bp
AAGCCGTATATTCtagaagcttttacaaaaatgcaTAATCATTGTGGAGG
CATTAATCAATTAATTATAGACGGACGTTTGGAATATTCCAATAGATTAT
TTTGCTAATATAACCCTTATGTGGCTGAATGCAAATTACAGaggaagttt
tttttaaagtttttcaaaagaaagaaactttAAGCTCATTAAAGAGTTGC
CTTCAACGCTCGCAGTGTCTAATTAGATGttttgattcttacaaaaagAT
ACCCACCTCAGCAAACATATACAATTACGAAACATTTAGATTTCTCTACA
AAAGGGTGTGTGCAAAGAGCAAAGAGATTCATATCAAATCAATTCAATTT
CTCTCAACAAGATCAACGAAGCTAATACACTGGTGAGAAATAAATTTGTT
TTCGAATCAAATTTTATATTATTGAAATCTTGAACTGATAAGTTTTCTTA
CGTAAGTTCGTCTTAGAAAAAAGCAGTTAGTGAATAATCTCAGTAAACGT
TAAAAAATTTGtgagaaatcaaaaaagtttctcttgaCAAAGACTTAAGA
TTTGCTTGAttacttttctttttagttGAACTACATTCCACGTTATAAAA
TTACAATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAAACAGCA
GCTCGCGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGTTGATTT
TGAGGACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGGGGGATG
AAAAGACCTTTCCCCTTGGACAAGTACCAGCTTTGCAAATCGATGGAGAA
TCATATGTTCAATCACACGCCATTTTGAGATATTTAGGAAACGAATTCAA
TTTGTATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAAATCTTGT
ACACTTTATTGGATCTTGAAGACCAATCCTTCCCCACTTTCTTCTTTACA
CCAAAATGTCAAAAGgatgagaaattgaaaaaattacacGACTATGCTGT
CCGAGCTTACAAAATGTTTGAAGGAATATTACAGAAGAATAACAAAGGAA
AAGAATACTTCGTTGGAAACAAGCTCTCAATCGCAGACCTGCATTTGGTC
ATATCCCTGG Run BLAST on NCBI transcript from alignment at scaffold_361:526277..533124+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061890 ID=TCONS_00061890|Name=TCONS_00061890|organism=Clytia hemisphaerica|type=transcript|length=6848bp|location=Sequence derived from alignment at scaffold_361:526277..533124+ (Clytia hemisphaerica)
AAGCCGTATATTCtagaagcttttacaaaaatgcaTAATCATTGTGGAGG
CATTAATCAATTAATTATAGACGGACGTTTGGAATATTCCAATAGATTAT
TTTGCTAATATAACCCTTATGTGGCTGAATGCAAATTACAGaggaagttt
tttttaaagtttttcaaaagaaagaaactttAAGCTCATTAAAGAGTTGC
CTTCAACGCTCGCAGTGTCTAATTAGATGttttgattcttacaaaaagAT
ACCCACCTCAGCAAACATATACAATTACGAAACATTTAGATTTCTCTACA
AAAGGGTGTGTGCAAAGAGCAAAGAGATTCATATCAAATCAATTCAATTT
CTCTCAACAAGATCAACGAAGCTAATACACTGGTGAGAAATAAATTTGTT
TTCGAATCAAATTTTATATTATTGAAATCTTGAACTGATAAGTTTTCTTA
CGTAAGTTCGTCTTAGAAAAAAGCAGTTAGTGAATAATCTCAGTAAACGT
TAAAAAATTTGtgagaaatcaaaaaagtttctcttgaCAAAGACTTAAGA
TTTGCTTGAttacttttctttttagttGAACTACATTCCACGTTATAAAA
TTACAATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAAACAGCA
GCTCGCGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGTTGATTT
TGAGGACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGGGGGATG
GTAAGACTGACGTCTTGTCTAGATAACTGGCTTTTTAGTAGAAAGAAAGG
ATCAGAGAAGCCTTAAGATATTCTTTATATTTAATAATGCTTAATGATTT
GACGTCCGTTGTTTCCTGCAGCTTGAATCGGAGTAAAGAGCATTGAAAAT
GGAACTGAATTTTCTCTAACAATCTAACTCTgtttcaaatttcagaaaag
acCTTTCCCCTTGGACAAGTACCAGCTTTGGAAATTGACGGTGAATCATA
CGTTCAATCACACGCCATTTTAAGATATATAGGAAACGAATTCGATTTGT
ATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAGATTTTGTACACT
TTGCAAAATATCGATGAACAGCTGCTTGGCACCTACTTCTTTACTAAAAA
AGCCCAAAAAGTAAGACCTTTAAAATCATTTATGTAATTAGGATCTTCCA
AATCAATAGTTGAGGGCACTGATTTTCAAACAAAGCGAACTTTCAAATCA
TGAATTTACTTCTAAACCAtgtttttcacaaatttcaggaagaaaaattt
aagaaaatacaCGACTATGCAGCCAGAGCTTACAAAATGTTTGAAGGAAT
ATTACAGAAAAATAATAATGGAAAAGATTATTTCGTCGGAAACAAGGTAA
GAAAAAACACTGAGCTTCCATTGCAAACAGACAAAAAACTATAAATTAAC
ACGATTCGAGACGGTAACCACGATTGGAAAGTCTACACCCGAGCACCTCT
ATGGGTGCTATCAAATGATGCATGGGTCTTGGCACTCCTAGGTCCCTGCT
GGCGGTAATCAGTCAAAAACAAACGGGAAGTAACGCACCCTTTCCTCTGG
GTTAGCGGTGGGGCGCATATAGAAAAACTTTACGAAAAACAGATAACAGC
TAATGTGATAttactttttttattcataGCTATCAATTGCAGATTTACAC
TTAGTGTCAAGTTTAGAGACGATGAGCCTTGAAGAAAACACTTTCCCAGG
ATTCAAGAATTTCATCGATAATTACCCATTGGTCAAAGCTCTTAACGAAC
GCGTCCGAAACGTCGAAAGTGTCAAGAAATTCCTGGAGAAACGAGGAACA
CCATTTTACGGCATGCAGAGAGAAATGGCAGCAAAAAATGGGTACTAGGC
TAGatattattcaaaattaatGCTTGTGTAGTTGTTAAAAAAAGCTCTCT
AGCAATTTTCATTATCTTTATTTATCATAAAATTAACCTTTTgtcaattt
gtttttatttgtaaaattcACGATATCTAGAATACGATAATACGGAAAAA
ATATCGCCATGTTTGATATTTTCTGAGCAACTATTAGAATATCTTCCCAG
ATTGGAGATGACTATTAAAATGATCAAGTAAACACCAGATTCAATTTCAA
TCGTAAACATTCATAACACTAGAGCCCCAGAGTTTTTTAATTGCGTTTAA
AAGCAGCTTTCCGATGTTTTAGAGGAAAAGAGCACCatataaaagggttt
tttggaaatCGAGCCATGCTGGgcataaacaaaaacaatccTTTCTTTCT
CTAATCTAACGAAGCAACTTCCAcaaatccaaaatttgggtaaaactttt
tcttttaaaaatcttgaagtcTTATATTTTAAGGATATTGCAATTTCGCA
TCACTGcgtaaaaaatcaggaaaagctaataaagcaatttcacacaaagt
ccaaaatacattttaggcactttttgacCCTAATTTGCccagaaaatcat
tttttcgaATATAAGGCtcatcagattttaaacaataccattttttatca
ttgtgcaaaaaaatatcaagGCGATCGCAAGAAATGCTCTTTtcccctaa
aaatgacaaaatggaatttccccaaatccgatttttacagctaaaaaaat
ttttcttggaaaaaacggcttcagccactttttagagaaccttgcaaTTT
ATCTTTATgcaaatcagaaaaagctaatgaagtaatttcattcagtccaa
aaaaacccgtttttaggcactttttggccgaaatttgCCCCctcccccaa
ttttttttttaattgattttaattGATATTCGAGTTCACATTTTGAGTAC
TGTCGTTTTGCATCACTATgcgaaaatcagagaaaactaatgggccaatc
ccgagaaaacgaacggacggacggacgaacgaacaaaggttaaattAAAA
GACCTCTGAAGTAGGTCCAAATAAATCTGGAGCATTTATTCGAAGAAATA
CCGTAAATTAGAAAGCGGGAAAAAGACTGGGCAGCTTCGTCTCAGGAGGA
CACGGAATTCTCACAAACCGAATGATGGGACACGAAGACTTTGTCTTCTA
TTCGGGTGGCGTGGGCAGAGCTGGTCCAAGTTCCTACCGGTACACGATCG
AAAAAATCAAACGAACATGTGGaactacagttgactctcgctaattcgaa
ctcgatcGGGGAATGATATgttttcgaattatagaaagtatctTAAGAGG
GTTAAAGCTCTTAACGAACGAAATCGAAATGTTGAAAATATCAGGAAATT
TTTGGACAAACGAGGAACAACATTCTACGGCATGCAGAGAGAATGGGCAG
CAAAAATGGATTCTAGACAATGCTAGTACCATTGTGCGTGTAAATATTTC
TTAATTGATATGTAATCCTCTCCTAGGAATCATGATTATCTTTATTTATC
ACTTAAGCAAATTTTTGAaggatttgtttttatttttgaaattcacggtt
tttagaaaaaagatatAATGTGTAAAAAAAGACGGTAATGTTGCCATGTT
TTATATTTTCTGACCAAACACTAAAATATCTACTCTCCTTCAGATTTGAG
ATCAATAATGCTATGTGCGGCGATTGTCTGCAGTGATGGCCACCAAAACG
ttcactttttcaattttttgacggcAAAAGGATAATCTGTTATAGGATTA
GATTATCTAAGGTGGGCACATTTCATCTCAATCAATTTATCTTTTTACAT
ACGAATCGCCACACCGAGGTCagcaaacaaaataaaataaggAAAGAAGT
TGATCCAGAAATTAGAGATAAGGCGCCGAGGAAATTTCCCCTCCCCCAAA
TTATTATCAACTCCCTATTAATAGTCTCTGAAAATATCAAGTGAGCTCAG
TGGTGCCCCTGTCCCTTATTCTCGTATTTTTGAAGATCTCCAATCAAACT
TAAACGAAATTTCGCACCCGAAAACGTATTCTAGCACTAAGtggtttgtt
tttaattttggtgtttttgtctCAAAAAAGTGAACCAGCTAAGTGCTCCA
TTCACTGGACTCAAAATGATCAGAGAGTTCAGTCAGAGGTCTAAGCCAAT
TTACTATCATATTGTCCCAACTTCCCAGCTGTGTTTTGTCTGTGACATGA
TTGGtcttgtttataaaaaaaccaAGAGACGAATAGCCCTctaagaatat
tccaatagctTCTTTTTAGAAACCGGAAAATAAATTCGAACGCTTCGTTT
CAGGAAGACGCAGAATTATATATGATAACACGAAGAACGTGAAAAGGTCG
AGGAGAAAGGAGAATCAGACGGTTTTACCTTACATGTTGCATTGCTTCAA
GGATCCTGAGAAAAGCCTAAAATGTCTCCATCTTATGGCTTCACAGTTAA
GATACAAGCATTTGAAATCTCTAAAGATGAGGTCTTACGTTTCTTAAGTT
GAATAgtcttactaaaataaaaaatgcaacTCGTCAAAGgtagaaatatt
ttgaagttttgcgCGAGGTTCGCCCGggtttataaaaatattcttcattC
AAAAGATCTCATGATATCTCATTACAGGGGCAGGAGCCACGCcatgaatt
tgaaaataagtACAAAACAGTCTAATTTCTTAGCTCGTGCAACGGCGCGG
GCAAGAAGACAAGCAGCCTCAACTAAAAGATCTGGCAGGAGTTGTGTGCC
ACTCTTAAGTTTACAGTGAGGCTTTCAAGGAAAATTGCACAGAAGAGAAT
TAGACAGCCGGCGGTTTGAAAAAAGAAGTCAGAATAAATGCTTGGTCATC
GTCCGAAAAGTGACTCTAAATTTGCAAACTTGCACAAAATATTTGAAGGG
TAGATATTTTTTGTATAAACAAAACATTGAACGGTGACATTGCATCTATT
TTTGAAATGCTTATCTAGCAAATGTAATTACTATAGAGTAATTAATTGAT
GCAATACTATTATTAAGCGTATGACAACAGGAAATTTGACTTGGAACTAA
ATCATGCATGCCATTACTATGCATATTTAAAATTGCGTATAAATACTGGG
TTTGGAATCAAATCCAATCAAATTAAACATTGGAGAAATAACCAAGttaa
aaagaaatcaataaaggtaccttaagggaagaaattttcgcgggaagaaa
atttcgcggttttcgcggattttgcctaaaaccgcgaaattaagttcccg
cgaaattttacaaaatcgtcaatccgcgaaattaaattcccgcgaatttt
tcaaaaatcgctgaaccgcgaaattaaattcccgcgaaaaaaaatatttg
accaaccgcgaaattaagttcccgcgaaaatttcttcccttaaggtaggc
TCATTGAAAAATTGTCTTCGTTTCTATCTGAATGATTTTCTATTCGTGGT
ATAATGAGCATTCGTCGCATGAACATTCTGTTGATATTACGAAGATAAAC
GACTTTCAAGCAGACTCTTATCATAGCAGAAACCTTAGTTTTGAAACCTA
GCAAACTGAAGTAAATGATATATCCTTCTTCTCATTTAGAAAACCAAAGA
CAAACATGGCACCAAAATATGTCCACCACTATCTCGATGCATCAGCTCGT
GGAGATCCTATCCGAATTGTTTTCTACGCTGCTGGGGTGGAATTTGAAGA
GAAATTGTACACGTTTGCTTGCATGCCCAAGATTAAAGCTGATGGTAAGC
TGAAATTTAGTGTTCGATTTAAAGCCAGAAgtgctagagaggaatcttca
acctttatCAGACAAGAAAATACCTTAGGATTTGCTCCGCTTTTAGACAT
ATTGAATCTAGagctttctttgatttcttacAGCATAATATTCAAAAGAA
GCcgatggattttactttcaatctggcattCTTTTCCCATTCAAGAATTT
CCACTTTTAAGCCCTTCGGGACTAAATGGGCCTACCTTATTCGAAGGATC
GCCTTTAACAAAACTAAACCTAGCCTTGCAGATTAGAAGATTGTCTCATC
AGAGAGCATAataaaacgtcaattttaaactttctcATTTCAGAAAAGAC
CTTTCCCCTTGGACAAGTACCAGCTTTGCAAATCGATGGAGAATCATATG
TTCAATCACACGCCATTTTGAGATATTTAGGAAACGAATTCAATTTGTAT
GGCATGTGCAACAAACAGAAATTGGTCATCGATGAAATCTTGTACACTTT
ATTGGATCTTGAAGACCAATCCTTCCCCACTTTCTTCTTTACACCAAAAT
GTCAAAAGGTAAAGAAAACAGACTTCCCTTTAGACTTCAAAAACTGTTGA
GTAGATGGAACAAACTGTTCTTTCCTCTTAAATGTTAAATTTCTACATTT
AGTCTTCAGAACCTTTTACTGTAGGGGGCGCCTAAATTATCTGCGTTCCA
AAGCTTCTATTATTCATCGCTGTTTCTAATTATCTTATACTTCATCAGga
tgagaaattgaaaaaattacacGACTATGCTGTCCGAGCTTACAAAATGT
TTGAAGGAATATTACAGAAGAATAACAAAGGAAAAGAATACTTCGTTGGA
AACAAGGTAAGTGTCCTTCTCATTCAAAAACatacaaattattttcaagt
AGCCACTGTTGAAATGTTTGGGCTGTGTAAATCCctgaattacacgtttt
tttatatgaacaaactatacgaacataaggctttgatggccaaaatacta
agaataagttatgaacattttaaggcttcgtggactcTAAAACGCCCGAT
TTCTtcggaaaatggacaaaaatattaaaaaaaacggtGAAATTGCTCTT
TCTACTTTCAGCTCTCAATCGCAGACCTGCATTTGGTCATATCCCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061890-exon-scaffold_361-1491911889:526277..527026 | TCONS_00061890-exon-scaffold_361-1491911889:526277..527026 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1510915933:526277..527026 | TCONS_00061890-exon-scaffold_361-1510915933:526277..527026 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1575043694:526277..527026 | TCONS_00061890-exon-scaffold_361-1575043694:526277..527026 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1491911889:532320..532534 | TCONS_00061890-exon-scaffold_361-1491911889:532320..532534 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1510915933:532320..532534 | TCONS_00061890-exon-scaffold_361-1510915933:532320..532534 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1575043694:532320..532534 | TCONS_00061890-exon-scaffold_361-1575043694:532320..532534 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1491911889:532725..532832 | TCONS_00061890-exon-scaffold_361-1491911889:532725..532832 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1510915933:532725..532832 | TCONS_00061890-exon-scaffold_361-1510915933:532725..532832 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1575043694:532725..532832 | TCONS_00061890-exon-scaffold_361-1575043694:532725..532832 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1491911889:533088..533124 | TCONS_00061890-exon-scaffold_361-1491911889:533088..533124 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1510915933:533088..533124 | TCONS_00061890-exon-scaffold_361-1510915933:533088..533124 | Clytia hemisphaerica | exon |
| TCONS_00061890-exon-scaffold_361-1575043694:533088..533124 | TCONS_00061890-exon-scaffold_361-1575043694:533088..533124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:526277..533124 + |
Blast
BLAST of TCONS_00061890 vs. Swiss-Prot (Human)
Match: GSTA3 (Glutathione S-transferase A3 OS=Homo sapiens GN=GSTA3 PE=1 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 1.002e-22 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 3
Query: 633 HYFKTAARGDPIRLAFCAAGVDFEDKTYTFA-DMPTIKGDEKTFPLGQVPALQIDGESYVQSHAILRYLGNEFNLYGMCNKQKLVIDEILYTLLDLEDQSFPTFFFTPKCQKDEKLKKL----HDYAVRAYKMFEGILQKNNKGKEYFVGNKLSIADLHLV 1100
HYF R +PIR AAGV+FE+K A D+ ++ D + QVP ++IDG VQ+ AIL Y+ +++NLYG K++ +ID + DL + P C+ +EK K+ R + FE +LQ + G++Y VGNKLS AD+ LV
Sbjct: 8 HYFNGRGRMEPIRWLLAAAGVEFEEKFIGSAEDLGKLRND-GSLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYTEGMADLNE----MILLLPLCRPEEKDAKIALIKEKTKSRYFPAFEKVLQSH--GQDYLVGNKLSRADISLV 161
The following BLAST results are available for this feature:
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