TCONS_00061889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061889
Unique NameTCONS_00061889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061889 ID=TCONS_00061889|Name=TCONS_00061889|organism=Clytia hemisphaerica|type=transcript|length=1506bp
AAGCCGTATATTCtagaagcttttacaaaaatgcaTAATCATTGTGGAGG
CATTAATCAATTAATTATAGACGGACGTTTGGAATATTCCAATAGATTAT
TTTGCTAATATAACCCTTATGTGGCTGAATGCAAATTACAGaggaagttt
tttttaaagtttttcaaaagaaagaaactttAAGCTCATTAAAGAGTTGC
CTTCAACGCTCGCAGTGTCTAATTAGATGttttgattcttacaaaaagAT
ACCCACCTCAGCAAACATATACAATTACGAAACATTTAGATTTCTCTACA
AAAGGGTGTGTGCAAAGAGCAAAGAGATTCATATCAAATCAATTCAATTT
CTCTCAACAAGATCAACGAAGCTAATACACTGGTGAGAAATAAATTTGTT
TTCGAATCAAATTTTATATTATTGAAATCTTGAACTGATAAGTTTTCTTA
CGTAAGTTCGTCTTAGAAAAAAGCAGTTAGTGAATAATCTCAGTAAACGT
TAAAAAATTTGtgagaaatcaaaaaagtttctcttgaCAAAGACTTAAGA
TTTGCTTGAttacttttctttttagttGAACTACATTCCACGTTATAAAA
TTACAATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAAACAGCA
GCTCGCGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGTTGATTT
TGAGGACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGGGGGATG
aaaagacCTTTCCCCTTGGACAAGTACCAGCTTTGGAAATTGACGGTGAA
TCATACGTTCAATCACACGCCATTTTAAGATATATAGGAAACGAATTCGA
TTTGTATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAGATTTTGT
ACACTTTGCAAAATATCGATGAACAGCTGCTTGGCACCTACTTCTTTACT
AAAAAAGCCCAAAAAgaagaaaaatttaagaaaatacaCGACTATGCAGC
CAGAGCTTACAAAATGTTTGAAGGAATATTACAGAAAAATAATAATGGAA
AAGATTATTTCGTCGGAAACAAGCTATCAATTGCAGATTTACACTTAGTG
TCAAGTTTAGAGACGATGAGCCTTGAAGAAAACACTTTCCCAGGATTCAA
GAATTTCATCGATAATTACCCATTGGTCAAAGCTCTTAACGAACGCGTCC
GAAACGTCGAAAGTGTCAAGAAATTCCTGGAGAAACGAGGAACACCATTT
TACGGCATGCAGAGAGAAATGGCAGCAAAAAATGGGTACTAGGCTAGata
ttattcaaaattaatGCTTGTGTAGTTGTTAAAAAAAGCTCTCTAGCAAT
TTTCATTATCTTTATTTATCATAAAATTAACCTTTTgtcaatttgttttt
atttgtaaaattcACGATATCTAGAATACGATAATACGGAAAAAATATCG
CCATGTTTGATATTTTCTGAGCAACTATTAGAATATCTTCCCAGATTGGA
GATGAC
Run BLAST on NCBI

protein sequence of TCONS_00061889-protein

>TCONS_00061889-protein ID=TCONS_00061889-protein|Name=TCONS_00061889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MSATTKYVHHYFKTAARGDPIRLAFCAAGVDFEDKTYTFADMPTIKGDEK
TFPLGQVPALEIDGESYVQSHAILRYIGNEFDLYGMCNKQKLVIDEILYT
LQNIDEQLLGTYFFTKKAQKEEKFKKIHDYAARAYKMFEGILQKNNNGKD
YFVGNKLSIADLHLVSSLETMSLEENTFPGFKNFIDNYPLVKALNERVRN
VESVKKFLEKRGTPFYGMQREMAAKNGY
Run BLAST on NCBI

transcript from alignment at scaffold_361:526277..528388+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061889 ID=TCONS_00061889|Name=TCONS_00061889|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at scaffold_361:526277..528388+ (Clytia hemisphaerica)
AAGCCGTATATTCtagaagcttttacaaaaatgcaTAATCATTGTGGAGG
CATTAATCAATTAATTATAGACGGACGTTTGGAATATTCCAATAGATTAT
TTTGCTAATATAACCCTTATGTGGCTGAATGCAAATTACAGaggaagttt
tttttaaagtttttcaaaagaaagaaactttAAGCTCATTAAAGAGTTGC
CTTCAACGCTCGCAGTGTCTAATTAGATGttttgattcttacaaaaagAT
ACCCACCTCAGCAAACATATACAATTACGAAACATTTAGATTTCTCTACA
AAAGGGTGTGTGCAAAGAGCAAAGAGATTCATATCAAATCAATTCAATTT
CTCTCAACAAGATCAACGAAGCTAATACACTGGTGAGAAATAAATTTGTT
TTCGAATCAAATTTTATATTATTGAAATCTTGAACTGATAAGTTTTCTTA
CGTAAGTTCGTCTTAGAAAAAAGCAGTTAGTGAATAATCTCAGTAAACGT
TAAAAAATTTGtgagaaatcaaaaaagtttctcttgaCAAAGACTTAAGA
TTTGCTTGAttacttttctttttagttGAACTACATTCCACGTTATAAAA
TTACAATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAAACAGCA
GCTCGCGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGTTGATTT
TGAGGACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGGGGGATG
GTAAGACTGACGTCTTGTCTAGATAACTGGCTTTTTAGTAGAAAGAAAGG
ATCAGAGAAGCCTTAAGATATTCTTTATATTTAATAATGCTTAATGATTT
GACGTCCGTTGTTTCCTGCAGCTTGAATCGGAGTAAAGAGCATTGAAAAT
GGAACTGAATTTTCTCTAACAATCTAACTCTgtttcaaatttcagaaaag
acCTTTCCCCTTGGACAAGTACCAGCTTTGGAAATTGACGGTGAATCATA
CGTTCAATCACACGCCATTTTAAGATATATAGGAAACGAATTCGATTTGT
ATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAGATTTTGTACACT
TTGCAAAATATCGATGAACAGCTGCTTGGCACCTACTTCTTTACTAAAAA
AGCCCAAAAAGTAAGACCTTTAAAATCATTTATGTAATTAGGATCTTCCA
AATCAATAGTTGAGGGCACTGATTTTCAAACAAAGCGAACTTTCAAATCA
TGAATTTACTTCTAAACCAtgtttttcacaaatttcaggaagaaaaattt
aagaaaatacaCGACTATGCAGCCAGAGCTTACAAAATGTTTGAAGGAAT
ATTACAGAAAAATAATAATGGAAAAGATTATTTCGTCGGAAACAAGGTAA
GAAAAAACACTGAGCTTCCATTGCAAACAGACAAAAAACTATAAATTAAC
ACGATTCGAGACGGTAACCACGATTGGAAAGTCTACACCCGAGCACCTCT
ATGGGTGCTATCAAATGATGCATGGGTCTTGGCACTCCTAGGTCCCTGCT
GGCGGTAATCAGTCAAAAACAAACGGGAAGTAACGCACCCTTTCCTCTGG
GTTAGCGGTGGGGCGCATATAGAAAAACTTTACGAAAAACAGATAACAGC
TAATGTGATAttactttttttattcataGCTATCAATTGCAGATTTACAC
TTAGTGTCAAGTTTAGAGACGATGAGCCTTGAAGAAAACACTTTCCCAGG
ATTCAAGAATTTCATCGATAATTACCCATTGGTCAAAGCTCTTAACGAAC
GCGTCCGAAACGTCGAAAGTGTCAAGAAATTCCTGGAGAAACGAGGAACA
CCATTTTACGGCATGCAGAGAGAAATGGCAGCAAAAAATGGGTACTAGGC
TAGatattattcaaaattaatGCTTGTGTAGTTGTTAAAAAAAGCTCTCT
AGCAATTTTCATTATCTTTATTTATCATAAAATTAACCTTTTgtcaattt
gtttttatttgtaaaattcACGATATCTAGAATACGATAATACGGAAAAA
ATATCGCCATGTTTGATATTTTCTGAGCAACTATTAGAATATCTTCCCAG
ATTGGAGATGAC

Coding sequence (CDS) from alignment at scaffold_361:526277..528388+

>TCONS_00061889 ID=TCONS_00061889|Name=TCONS_00061889|organism=Clytia hemisphaerica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_361:526277..528388+ (Clytia hemisphaerica)
ATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAAACAGCAGCTCG
CGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGTTGATTTTGAGG
ACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGGGGGATGaaaag
acCTTTCCCCTTGGACAAGTACCAGCTTTGGAAATTGACGGTGAATCATA
CGTTCAATCACACGCCATTTTAAGATATATAGGAAACGAATTCGATTTGT
ATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAGATTTTGTACACT
TTGCAAAATATCGATGAACAGCTGCTTGGCACCTACTTCTTTACTAAAAA
AGCCCAAAAAgaagaaaaatttaagaaaatacaCGACTATGCAGCCAGAG
CTTACAAAATGTTTGAAGGAATATTACAGAAAAATAATAATGGAAAAGAT
TATTTCGTCGGAAACAAGCTATCAATTGCAGATTTACACTTAGTGTCAAG
TTTAGAGACGATGAGCCTTGAAGAAAACACTTTCCCAGGATTCAAGAATT
TCATCGATAATTACCCATTGGTCAAAGCTCTTAACGAACGCGTCCGAAAC
GTCGAAAGTGTCAAGAAATTCCTGGAGAAACGAGGAACACCATTTTACGG
CATGCAGAGAGAAATGGCAGCAAAAAATGGGTACTAGATGTCAGCCACAA
CAAAATATGTTCACCATTACTTCAAAACAGCAGCTCGCGGAGATCCAATC
AGATTGGCTTTCTGTGCCGCAGGCGTTGATTTTGAGGACAAAACCTACAC
GTTCGCTGATATGCCCACAATTAAGGGGGATGaaaagacCTTTCCCCTTG
GACAAGTACCAGCTTTGGAAATTGACGGTGAATCATACGTTCAATCACAC
GCCATTTTAAGATATATAGGAAACGAATTCGATTTGTATGGCATGTGCAA
CAAACAGAAATTGGTCATCGATGAGATTTTGTACACTTTGCAAAATATCG
ATGAACAGCTGCTTGGCACCTACTTCTTTACTAAAAAAGCCCAAAAAgaa
gaaaaatttaagaaaatacaCGACTATGCAGCCAGAGCTTACAAAATGTT
TGAAGGAATATTACAGAAAAATAATAATGGAAAAGATTATTTCGTCGGAA
ACAAGCTATCAATTGCAGATTTACACTTAGTGTCAAGTTTAGAGACGATG
AGCCTTGAAGAAAACACTTTCCCAGGATTCAAGAATTTCATCGATAATTA
CCCATTGGTCAAAGCTCTTAACGAACGCGTCCGAAACGTCGAAAGTGTCA
AGAAATTCCTGGAGAAACGAGGAACACCATTTTACGGCATGCAGAGAGAA
ATGGCAGCAAAAAATGGGTACTAGATGTCAGCCACAACAAAATATGTTCA
CCATTACTTCAAAACAGCAGCTCGCGGAGATCCAATCAGATTGGCTTTCT
GTGCCGCAGGCGTTGATTTTGAGGACAAAACCTACACGTTCGCTGATATG
CCCACAATTAAGGGGGATGaaaagacCTTTCCCCTTGGACAAGTACCAGC
TTTGGAAATTGACGGTGAATCATACGTTCAATCACACGCCATTTTAAGAT
ATATAGGAAACGAATTCGATTTGTATGGCATGTGCAACAAACAGAAATTG
GTCATCGATGAGATTTTGTACACTTTGCAAAATATCGATGAACAGCTGCT
TGGCACCTACTTCTTTACTAAAAAAGCCCAAAAAgaagaaaaatttaaga
aaatacaCGACTATGCAGCCAGAGCTTACAAAATGTTTGAAGGAATATTA
CAGAAAAATAATAATGGAAAAGATTATTTCGTCGGAAACAAGCTATCAAT
TGCAGATTTACACTTAGTGTCAAGTTTAGAGACGATGAGCCTTGAAGAAA
ACACTTTCCCAGGATTCAAGAATTTCATCGATAATTACCCATTGGTCAAA
GCTCTTAACGAACGCGTCCGAAACGTCGAAAGTGTCAAGAAATTCCTGGA
GAAACGAGGAACACCATTTTACGGCATGCAGAGAGAAATGGCAGCAAAAA
ATGGGTACTAGATGTCAGCCACAACAAAATATGTTCACCATTACTTCAAA
ACAGCAGCTCGCGGAGATCCAATCAGATTGGCTTTCTGTGCCGCAGGCGT
TGATTTTGAGGACAAAACCTACACGTTCGCTGATATGCCCACAATTAAGG
GGGATGaaaagacCTTTCCCCTTGGACAAGTACCAGCTTTGGAAATTGAC
GGTGAATCATACGTTCAATCACACGCCATTTTAAGATATATAGGAAACGA
ATTCGATTTGTATGGCATGTGCAACAAACAGAAATTGGTCATCGATGAGA
TTTTGTACACTTTGCAAAATATCGATGAACAGCTGCTTGGCACCTACTTC
TTTACTAAAAAAGCCCAAAAAgaagaaaaatttaagaaaatacaCGACTA
TGCAGCCAGAGCTTACAAAATGTTTGAAGGAATATTACAGAAAAATAATA
ATGGAAAAGATTATTTCGTCGGAAACAAGCTATCAATTGCAGATTTACAC
TTAGTGTCAAGTTTAGAGACGATGAGCCTTGAAGAAAACACTTTCCCAGG
ATTCAAGAATTTCATCGATAATTACCCATTGGTCAAAGCTCTTAACGAAC
GCGTCCGAAACGTCGAAAGTGTCAAGAAATTCCTGGAGAAACGAGGAACA
CCATTTTACGGCATGCAGAGAGAAATGGCAGCAAAAAATGGGTACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038813XLOC_038813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061889-exon-scaffold_361-1491911889:526277..527026TCONS_00061889-exon-scaffold_361-1491911889:526277..527026Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1510915933:526277..527026TCONS_00061889-exon-scaffold_361-1510915933:526277..527026Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1575043694:526277..527026TCONS_00061889-exon-scaffold_361-1575043694:526277..527026Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1491911889:527222..527436TCONS_00061889-exon-scaffold_361-1491911889:527222..527436Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1510915933:527222..527436TCONS_00061889-exon-scaffold_361-1510915933:527222..527436Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1575043694:527222..527436TCONS_00061889-exon-scaffold_361-1575043694:527222..527436Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1491911889:527565..527672TCONS_00061889-exon-scaffold_361-1491911889:527565..527672Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1510915933:527565..527672TCONS_00061889-exon-scaffold_361-1510915933:527565..527672Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1575043694:527565..527672TCONS_00061889-exon-scaffold_361-1575043694:527565..527672Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1491911889:527956..528388TCONS_00061889-exon-scaffold_361-1491911889:527956..528388Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1510915933:527956..528388TCONS_00061889-exon-scaffold_361-1510915933:527956..528388Clytia hemisphaericaexon
TCONS_00061889-exon-scaffold_361-1575043694:527956..528388TCONS_00061889-exon-scaffold_361-1575043694:527956..528388Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061889-proteinTCONS_00061889-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:526277..528388 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34354	2.42747	1.80836	1.50766	12.9993	7.66341	63.8412	67.6046	309.614	164.918	227.029	74.5426	37.7758	26.0231	25.3398	35.4822	33.77	40.9495	22.9105	143.241	46.7869	46.818	12.9098	13.1922	18.3868	31.2927	8.39345	10.8902	12.9284	9.6602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004045Glutathione_S-Trfase_N
IPR004046GST_C
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00061889 vs. Swiss-Prot (Human)
Match: GSTA3 (Glutathione S-transferase A3 OS=Homo sapiens GN=GSTA3 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 5.906e-29
Identity = 74/206 (35.92%), Postives = 116/206 (56.31%), Query Frame = 3 
Query:  633 HYFKTAARGDPIRLAFCAAGVDFEDKTYTFA-DMPTIKGDEKTFPLGQVPALEIDGESYVQSHAILRYIGNEFDLYGMCNKQKLVIDEILYTLQNIDEQLLGTYXXXXXXXXXXXXXXIHDYAARAYKMFEGILQKNNNGKDYFVGNKLSIADLHLVSSLETMSLEENTFPGFKNFIDNYPLVKALNERVRNVESVKKFLEKRGTP 1247
            HYF    R +PIR    AAGV+FE+K    A D+  ++ D  +    QVP +EIDG   VQ+ AIL YI ++++LYG   K++ +ID     + +++E +L       + +  +         +R +  FE +LQ  ++G+DY VGNKLS AD+ LV  L  +   +++       I N+PL+KAL  R+ N+ +VKKFL+  G+P
Sbjct:    8 HYFNGRGRMEPIRWLLAAAGVEFEEKFIGSAEDLGKLRND-GSLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYTEGMADLNEMILLLPLCRPEEKDAKIALIKEKTKSRYFPAFEKVLQ--SHGQDYLVGNKLSRADISLVELLYYVEELDSS------LISNFPLLKALKTRISNLPTVKKFLQP-GSP 203
The following BLAST results are available for this feature:
BLAST of TCONS_00061889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTA35.906e-2935.92Glutathione S-transferase A3 OS=Homo sapiens GN=GS... [more]
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