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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061876 ID=TCONS_00061876|Name=TCONS_00061876|organism=Clytia hemisphaerica|type=transcript|length=904bp
ACAGTTTAATGTGAAGTGTAAAGGTTGCACTACGTTAAGAATCACAATCT
TATCTTTGggatcaaaaagattttcttgtGAAAATGAAGAACTGTTTATA
CCTTTTGTGTTTGGCATGTTCCGTATGGTTCACCTTTGGATTTTCAGTTG
GTAATCGAAATGAAACTGAAAAAGTCGGTGGATATGATCAACCAAGTGAT
TTAAAATGTCCACCAGGGCAAATGATTTACAGTATTTCAAGTAATCATTC
ATTTTGGCATCGCGATCGAACTTTCTCAATCTATTGTAAAGAATCGAACC
GACTTGTCAATCAAACTGTTCAAACCAACTACACCAACGATTATGATCAA
TCTTTTGACTTCAAATGTCCCGAAAACTATGTCCTGTCCGGAATCCAGAG
TATCCATAGCAACAAGCATGGGGATCGCATCTTCAAATTCACATGTACTC
TTTTCGAGCACGAATGCTATTGGACGGCTTATACACAATCATTCAAAGAT
TTTACCATGACTGTCCCACGTGGTTTCTATTTCAAAGGAGTCAAAAGTGA
TCACAATAATTTAATCCAGGATCGTCAATTCAGTTTCTACATGTGCAAGA
TGAGAGTTTTGTAAGAAATCATCGATCGCAGCCATAATATACAAGATTTC
ATTTTCTCCAGCCTTATGCTGTTACTGAATACATAGAAAATGTTCACTTT
AAATCAACCTTCTGTTTTACGTACGTATTGCTCTGAGATAATTGGCCATT
TAcaggaaaaaagcccaaataagACATAGGTTtggttgccaaattccatg
atggtggtatttTTAGCATGAACCTTATAACTTTTTGTCCAAATTCATTT
TTAAAGAGTACATTCTTAACAAAAAAGTAAAGTGTTTGCATTTCTAACTT
TTAC Run BLAST on NCBI protein sequence of TCONS_00061876-protein >TCONS_00061876-protein ID=TCONS_00061876-protein|Name=TCONS_00061876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MKNCLYLLCLACSVWFTFGFSVGNRNETEKVGGYDQPSDLKCPPGQMIYS
ISSNHSFWHRDRTFSIYCKESNRLVNQTVQTNYTNDYDQSFDFKCPENYV
LSGIQSIHSNKHGDRIFKFTCTLFEHECYWTAYTQSFKDFTMTVPRGFYF
KGVKSDHNNLIQDRQFSFYMCKMRVL Run BLAST on NCBI transcript from alignment at scaffold_361:408341..410127+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061876 ID=TCONS_00061876|Name=TCONS_00061876|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at scaffold_361:408341..410127+ (Clytia hemisphaerica)
ACAGTTTAATGTGAAGTGTAAAGGTTGCACTACGTTAAGAATCACAATCT
TATCTTTGggatcaaaaagattttcttgtGAAAATGAAGAACTGTTTATA
CCTTTTGTGTTTGGCATGTTCCGTATGGTTCACCTTTGGATTTTCAGTTG
GTAATCGAAATGAAACTGAAAAAGTCGGTGGATATGATCAACCAAGTGAT
TTAAAATGTCCACCAGGTATGTCATTTTCTTTGTACACTTAAGATGAAAA
TTCCCTGTCTATCAACGCCGAATGATGTTTCTGGTAAAATGAAATGCCAG
AATTCAAGGCAAGGTTGATTTAATTAGACTCCAGAAAAGGTTTTTGATAC
ACAGGTACCTCTGACTTTCAAAAATGTTAAGTCGACATATTATTAGACCT
TATTTTCTGTTTTACTTTCAGGGCAAATGATTTACAGTATTTCAAGTAAT
CATTCATTTTGGCATCGCGATCGAACTTTCTCAATCTATTGTAAAGAATC
GAACCGACTTGTCAATCAAACTGTTCAAACCAACTACACCAACGATTATG
ATCAATCTTTTGACTTCAAATGTCCCGAAAACTATGTCCTGTCCGGTAAG
TCGTCTTATTGTGGAAGACTTTTGTTGTGTGTGCTCTCATAAAAACATAC
GCTGGTCCCGAATTTAAGTTCGGATAATTTAttctcttcaaattttgaat
ggTATATGTATGACCTTTTCGAAACTGTTTTTATGAGTATATTCAATAAC
GCCGTtgcaaattcttcaaaattcaaTCAACAAATTCTTTCGGCCATAAG
GGGAAAATTATAGAAATTTAATTGATTGTATCGAATAGATTTTTATCCTT
CACACTTCTCCCAATTCTCCAAGCCCATTACCCCATTACCCGTGGAGATA
AAGCTTTGTTTAGCTCAGATAAAGGAGGCGCTAGTGTCTGGCTATCTTCC
GGCTATTTCACTCTCATTAACGCCCTCACCCCCCACAGTTCCCCTATAAT
TCTCACCCTTACCGCCAACAGTTCACCTCTCTTTGTTTCCTGCAGGAATC
CAGAGTATCCATAGCAACAAGCATGGGGATCGCATCTTCAAATTCACATG
TACTCTTTTCGAGCACGAATGCTATTGGACGGCTTATACACAATCATTCA
AAGATTTTACCATGACTGTCCCACGTGGTTTCTATTTCAAAGGAGTCAAA
AGTGATCACAATAATTTAATCCAGTGAGTTTtccttttctttaatttttg
attgTGAGAAATTTGATTCTGTCTTCGACTCGGGTGTAGCCtataaaagg
gttttttgcAGTGtcgaattcaaaaaaattcataaaaaagatattttgga
TCATTCTACCGGATTGAAATGATTAAAAATAACGGTCGTTTTCCTGGAGG
AATAGTATTTTTCTTGGTTTGATGTCATTTGCTTTCTTTCTTGCATTTTA
GGGATCGTCAATTCAGTTTCTACATGTGCAAGATGAGAGTTTTGTAAGAA
ATCATCGATCGCAGCCATAATATACAAGATTTCATTTTCTCCAGCCTTAT
GCTGTTACTGAATACATAGAAAATGTTCACTTTAAATCAACCTTCTGTTT
TACGTACGTATTGCTCTGAGATAATTGGCCATTTAcaggaaaaaagccca
aataagACATAGGTTtggttgccaaattccatgatggtggtatttTTAGC
ATGAACCTTATAACTTTTTGTCCAAATTCATTTTTAAAGAGTACATTCTT
AACAAAAAAGTAAAGTGTTTGCATTTCTAACTTTTAC Coding sequence (CDS) from alignment at scaffold_361:408341..410127+ >TCONS_00061876 ID=TCONS_00061876|Name=TCONS_00061876|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_361:408341..410127+ (Clytia hemisphaerica)
ATGAAGAACTGTTTATACCTTTTGTGTTTGGCATGTTCCGTATGGTTCAC
CTTTGGATTTTCAGTTGGTAATCGAAATGAAACTGAAAAAGTCGGTGGAT
ATGATCAACCAAGTGATTTAAAATGTCCACCAGGGCAAATGATTTACAGT
ATTTCAAGTAATCATTCATTTTGGCATCGCGATCGAACTTTCTCAATCTA
TTGTAAAGAATCGAACCGACTTGTCAATCAAACTGTTCAAACCAACTACA
CCAACGATTATGATCAATCTTTTGACTTCAAATGTCCCGAAAACTATGTC
CTGTCCGGAATCCAGAGTATCCATAGCAACAAGCATGGGGATCGCATCTT
CAAATTCACATGTACTCTTTTCGAGCACGAATGCTATTGGACGGCTTATA
CACAATCATTCAAAGATTTTACCATGACTGTCCCACGTGGTTTCTATTTC
AAAGGAGTCAAAAGTGATCACAATAATTTAATCCAGGATCGTCAATTCAG
TTTCTACATGTGCAAGATGAGAGTTTTGTAAATGAAGAACTGTTTATACC
TTTTGTGTTTGGCATGTTCCGTATGGTTCACCTTTGGATTTTCAGTTGGT
AATCGAAATGAAACTGAAAAAGTCGGTGGATATGATCAACCAAGTGATTT
AAAATGTCCACCAGGGCAAATGATTTACAGTATTTCAAGTAATCATTCAT
TTTGGCATCGCGATCGAACTTTCTCAATCTATTGTAAAGAATCGAACCGA
CTTGTCAATCAAACTGTTCAAACCAACTACACCAACGATTATGATCAATC
TTTTGACTTCAAATGTCCCGAAAACTATGTCCTGTCCGGAATCCAGAGTA
TCCATAGCAACAAGCATGGGGATCGCATCTTCAAATTCACATGTACTCTT
TTCGAGCACGAATGCTATTGGACGGCTTATACACAATCATTCAAAGATTT
TACCATGACTGTCCCACGTGGTTTCTATTTCAAAGGAGTCAAAAGTGATC
ACAATAATTTAATCCAGGATCGTCAATTCAGTTTCTACATGTGCAAGATG
AGAGTTTTGTAAATGAAGAACTGTTTATACCTTTTGTGTTTGGCATGTTC
CGTATGGTTCACCTTTGGATTTTCAGTTGGTAATCGAAATGAAACTGAAA
AAGTCGGTGGATATGATCAACCAAGTGATTTAAAATGTCCACCAGGGCAA
ATGATTTACAGTATTTCAAGTAATCATTCATTTTGGCATCGCGATCGAAC
TTTCTCAATCTATTGTAAAGAATCGAACCGACTTGTCAATCAAACTGTTC
AAACCAACTACACCAACGATTATGATCAATCTTTTGACTTCAAATGTCCC
GAAAACTATGTCCTGTCCGGAATCCAGAGTATCCATAGCAACAAGCATGG
GGATCGCATCTTCAAATTCACATGTACTCTTTTCGAGCACGAATGCTATT
GGACGGCTTATACACAATCATTCAAAGATTTTACCATGACTGTCCCACGT
GGTTTCTATTTCAAAGGAGTCAAAAGTGATCACAATAATTTAATCCAGGA
TCGTCAATTCAGTTTCTACATGTGCAAGATGAGAGTTTTGTAAATGAAGA
ACTGTTTATACCTTTTGTGTTTGGCATGTTCCGTATGGTTCACCTTTGGA
TTTTCAGTTGGTAATCGAAATGAAACTGAAAAAGTCGGTGGATATGATCA
ACCAAGTGATTTAAAATGTCCACCAGGGCAAATGATTTACAGTATTTCAA
GTAATCATTCATTTTGGCATCGCGATCGAACTTTCTCAATCTATTGTAAA
GAATCGAACCGACTTGTCAATCAAACTGTTCAAACCAACTACACCAACGA
TTATGATCAATCTTTTGACTTCAAATGTCCCGAAAACTATGTCCTGTCCG
GAATCCAGAGTATCCATAGCAACAAGCATGGGGATCGCATCTTCAAATTC
ACATGTACTCTTTTCGAGCACGAATGCTATTGGACGGCTTATACACAATC
ATTCAAAGATTTTACCATGACTGTCCCACGTGGTTTCTATTTCAAAGGAG
TCAAAAGTGATCACAATAATTTAATCCAGGATCGTCAATTCAGTTTCTAC
ATGTGCAAGATGAGAGTTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061876-exon-scaffold_361-1491911889:408341..408556 | TCONS_00061876-exon-scaffold_361-1491911889:408341..408556 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1510915933:408341..408556 | TCONS_00061876-exon-scaffold_361-1510915933:408341..408556 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1575043694:408341..408556 | TCONS_00061876-exon-scaffold_361-1575043694:408341..408556 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1491911889:408762..408935 | TCONS_00061876-exon-scaffold_361-1491911889:408762..408935 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1510915933:408762..408935 | TCONS_00061876-exon-scaffold_361-1510915933:408762..408935 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1575043694:408762..408935 | TCONS_00061876-exon-scaffold_361-1575043694:408762..408935 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1491911889:409386..409563 | TCONS_00061876-exon-scaffold_361-1491911889:409386..409563 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1510915933:409386..409563 | TCONS_00061876-exon-scaffold_361-1510915933:409386..409563 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1575043694:409386..409563 | TCONS_00061876-exon-scaffold_361-1575043694:409386..409563 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1491911889:409792..410127 | TCONS_00061876-exon-scaffold_361-1491911889:409792..410127 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1510915933:409792..410127 | TCONS_00061876-exon-scaffold_361-1510915933:409792..410127 | Clytia hemisphaerica | exon |
| TCONS_00061876-exon-scaffold_361-1575043694:409792..410127 | TCONS_00061876-exon-scaffold_361-1575043694:409792..410127 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:408341..410127 + |
Blast
The following BLAST results are available for this feature:
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