|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061875 ID=TCONS_00061875|Name=TCONS_00061875|organism=Clytia hemisphaerica|type=transcript|length=2800bp
CTGAGAAGTTCATTAAAAGTAACGGTATATAAAAAAAGATAGACGATTTT
AATTTCACTGATAAACAAAGCTGCTTACCCTGCTTTTCTGGATTGCATGT
TCTTCGTCGTGTCTGCGTTGGAGATCAGACATGAATGAATAAACGTCACG
CCTTGATTTATCCGGAGAGCGCAAAAGAGATGGTTGTGGTTCTTTGCCAC
GCGTAGCGAATTGATTCCGATATCTTTCCTCTGTCAGACGGTGTTTTGAC
GGTATATCGGGTAATCGCCGGTGAAGTCGCATCATTGACGGCTGTTTGTT
AGTTATTTGTTCGTAAAGACGCTTACGAGTGTCGTTTGTTAAATGTCGGT
CGGGTGATATCGGTCTGATAGGTAGTTGAGCGTTCCATATTTGTTGTTTT
GAGTCTTGAGCTTCAGAATGTGGATTTCCGGTGAATTTCAGTGAAGTTAA
GTTGTCGTATTCGATTGATGAAGAAGTTGAGTGACGGAGATTGCGCAATG
TCAGGTAATCACTTGTAGTTGGTGAACGTTTGAATGATCGCCTTGTTGGA
GATGGGTAGTCATCCATTGGTGACCGTTTGGGTACCAATTCTCTTTCGCT
CATTGATCGGGATTTTGTATACAAAATGTTTCTGGTGAGTCCTCTACCAT
CATTGAAAGGATAATCTGCTGATCTTCCCATTTTCTTTGACACGTGGTTC
AAATCATCATAAGGTTGATATTCTGAACTAACCAGTGATTGTTTTGGTGC
GAATTTCGGTAAGGGATTTCGTAAGAGCTCTTTCAAATCACTTATATCAC
GGTTTGGAGTGTACGGATGGTTTGAGATGATGGCTGATGTGGGCGGTTTA
TTGAGGGTGGCAGGCGTCGATTTGTTGACAGTTGTGGGCGTATCCCTACT
TAATGGTTGATAAGTTGTTTTTATTGGGGGCTGTCTCGGTTTGATTAATT
CTTCTGGTGACAACGTCCGATCGAGATCATTTTGGGTCGGTTTTGCCGTA
TGTGTTGTTGATTTATCTAACAGCACTGGTAAATTTGTTATTGACTCTGC
ATCGACCATCTCTTTCAAATGTCCATCTTTTGAGCAGTGTGTGTCTGTTG
ATTCTTTGGTATCTGGAGGTAATGTTCTCGATTTGATAAATGATTTTAAA
GTTGAgagtttttgtaatttttcttcattGGTAATGAAACGTGGTTTGGG
AATAACGATTGAAGTAGTTGAAGTTGGATTCATTAGTTTGTGTTGATCTT
TGGTTAAAGTCTGAGGCTCAGGAATAATAAGATCCATTGGTGAATCTGTT
GATTCTCTTGGTTTGATTTGCCCTTTGGTCAATGATTGATGTGCTGGTGA
TGTTTTCTCAGTTCTAGGTTCAGGGATTGTAAGATCTATCAATGTTCTTG
GTTTGATCTTTTCATTGGCCAGTGCTTGAGGTTCTGGTATGACAAGGTCT
CTTTGAGGTTCTGGTTTTGATGTATTTGGACTGTTTGGTGATTGTTTAGT
TCTTGATTCCTGGAAATCGTCATGAACAGATGGTGGAGAGTCGGTCAGCA
TTTGGTATAAATTTCGTGGTTTTGGTATTTTGATTTCTGTGGTGGAATGA
TTAAATGGCGAATGACGGTTGTCGGCTTTTGACGTTAAATCGTCCGATGT
GTAGGTAGGTTGATTACCGATGCATATTTCTGATTCTTTGTTGATAAGAC
GAACTACTTGGATATCCTTCTCGTCAAACCGATCACATTTTTTGAACGCA
CTTCGTGATTCACAatcatttccagaaaaattgaTTGTGTCTTTGTGATT
acaaataatgacgtcatcgtcaTTAACGTCTTGTTGGAAAGGTAAAACTC
GGTCGTTTTGTGTACCGACGGGATCGtcattttgtatgatttttggTTGG
AAGACGACTGGTTGTTGGTTCATTGATGTACTTTGACCACTCTTGATGGA
TATCGGTGCATCTTTCGATAATGACACGACACTGAGGATTTTGATGCCTA
TATCTTCTTGGTTTTTTGAAATCATCGGGTCATAAGAATAACATCTTTTC
AATGGTTCGTCAGTAGTATGTTTCTTTTGCTCAATTTCAGAATCTGATTT
TACCGAGTTTGGTCGAATACGTGTCTCAGATTCCTTCCGTTTTTGTAAAG
TCTCTTCAAGCTTTTTCGCTTTTACTTTCTCctctttctgtttttgttct
tcACGTAATCTCTCCTCtgctttttctttatttaatttctcCTGGAGTTT
TTTCTCCTCAACCTTTATGACGCCTTCGTTGATCTTATTCTCAGATTTCA
AACGTTCCAACAACCAATTATGTCTCGGGAACTCCATGGCGTATCGGTTT
CGGCTCACCAAGTCATTGTCTGTTTTATTGTTAACAATTTTCTTTACCTT
AAAATTCTGTTTGTTAGATTTGCTCATTTTCTGGTATTGATTACCAGGTT
TGCTGTTTCCACCAGCAGGGTTATCTCCAAACGAAATAACACCCAAGATA
TTGTCCACTAACTGATCTTCTAAAGTGAACCCATCCGAATGTTGACATTG
AGTTCTTGACTTTTTAATTGGTTGATCACAACATGGTTCCtttttttcgt
ttattttattgttttcctTATCCGACCTAGTTATCAATAGCTCGGTTTTG
TCGGTCATTTTTTCGACAGTTTCCTCGTCCTTTTCTAACGTCTTTATCTT
TATCTTTGAAAGTGATTTAACGACAGTTTCTGGTAGCGGCAATATCTGTT
TTGGTTCTACAAGGTTAGCTTTTCGGTTACACAAATCCTGtatgcaaaaa Run BLAST on NCBI transcript from alignment at scaffold_361:389559..392493+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061875 ID=TCONS_00061875|Name=TCONS_00061875|organism=Clytia hemisphaerica|type=transcript|length=2935bp|location=Sequence derived from alignment at scaffold_361:389559..392493+ (Clytia hemisphaerica)
CTGAGAAGTTCATTAAAAGTAACGGTATATAAAAAAAGATAGACGATTTT
AATTTCACTGATAAACAAAGCTGCTTACCCTGCTTTTCTGGATTGCATGT
TCTTCGTCGTGTCTGCGTTGGAGATCAGACATGAATGAATAAACGTCACG
CCTTGATTTATCCGGAGAGCGCAAAAGAGATGGTTGTGGTTCTTTGCCAC
GCGTAGCGAATTGATTCCGATATCTTTCCTCTGTCAGACGGTGTTTTGAC
GGTATATCGGGTAATCGCCGGTGAAGTCGCATCATTGACGGCTGTTTGTT
AGTTATTTGTTCGTAAAGACGCTTACGAGTGTCGTTTGTTAAATGTCGGT
CGGGTGATATCGGTCTGATAGGTAGTTGAGCGTTCCATATTTGTTGTTTT
GAGTCTTGAGCTTCAGAATGTGGATTTCCGGTGAATTTCAGTGAAGTTAA
GTTGTCGTATTCGATTGATGAAGAAGTTGAGTGACGGAGATTGCGCAATG
TCAGGTAATCACTTGTAGTTGGTGAACGTTTGAATGATCGCCTTGTTGGA
GATGGGTAGTCATCCATTGGTGACCGTTTGGGTACCAATTCTCTTTCGCT
CATTGATCGGGATTTTGTATACAAAATGTTTCTGGTGAGTCCTCTACCAT
CATTGAAAGGATAATCTGCTGATCTTCCCATTTTCTTTGACACGTGGTTC
AAATCATCATAAGGTTGATATTCTGAACTAACCAGTGATTGTTTTGGTGC
GAATTTCGGTAAGGGATTTCGTAAGAGCTCTTTCAAATCACTTATATCAC
GGTTTGGAGTGTACGGATGGTTTGAGATGATGGCTGATGTGGGCGGTTTA
TTGAGGGTGGCAGGCGTCGATTTGTTGACAGTTGTGGGCGTATCCCTACT
TAATGGTTGATAAGTTGTTTTTATTGGGGGCTGTCTCGGTTTGATTAATT
CTTCTGGTGACAACGTCCGATCGAGATCATTTTGGGTCGGTTTTGCCGTA
TGTGTTGTTGATTTATCTAACAGCACTGGTAAATTTGTTATTGACTCTGC
ATCGACCATCTCTTTCAAATGTCCATCTTTTGAGCAGTGTGTGTCTGTTG
ATTCTTTGGTATCTGGAGGTAATGTTCTCGATTTGATAAATGATTTTAAA
GTTGAgagtttttgtaatttttcttcattGGTAATGAAACGTGGTTTGGG
AATAACGATTGAAGTAGTTGAAGTTGGATTCATTAGTTTGTGTTGATCTT
TGGTTAAAGTCTGAGGCTCAGGAATAATAAGATCCATTGGTGAATCTGTT
GATTCTCTTGGTTTGATTTGCCCTTTGGTCAATGATTGATGTGCTGGTGA
TGTTTTCTCAGTTCTAGGTTCAGGGATTGTAAGATCTATCAATGTTCTTG
GTTTGATCTTTTCATTGGCCAGTGCTTGAGGTTCTGGTATGGCGAGGTCT
CTTTGAGGTTCTGGTATGGCGAGGTCTCTTTGAGGTTCTGGTATGGCAAG
GTCTCTTTGAGGTTCTGGTATGACAAGGTCTCTTTGAGGTTCTGGTATGA
CAAGGTCTCTTTGAGGTTCTGGTATGACAAGGCCTGTTTGAGGTTCTGGT
TTTGATGTATTTGGACTGTTTGGTGATTGTTTAGTTCTTGATTCCTGGAA
ATCGTCATGAACAGATGGTGGAGAGTCGGTCAGCATTTGGTATAAATTTC
GTGGTTTTGGTATTTTGATTTCTGTGGTGGAATGATTAAATGGCGAATGA
CGGTTGTCGGCTTTTGACGTTAAATCGTCCGATGTGTAGGTAGGTTGATT
ACCGATGCATATTTCTGATTCTTTGTTGATAAGACGAACTACTTGGATAT
CCTTCTCGTCAAACCGATCACATTTTTTGAACGCACTTCGTGATTCACAa
tcatttccagaaaaattgaTTGTGTCTTTGTGATTacaaataatgacgtc
atcgtcaTTAACGTCTTGTTGGAAAGGTAAAACTCGGTCGTTTTGTGTAC
CGACGGGATCGtcattttgtatgatttttggTTGGAAGACGACTGGTTGT
TGGTTCATTGATGTACTTTGACCACTCTTGATGGATATCGGTGCATCTTT
CGATAATGACACGACACTGAGGATTTTGATGCCTATATCTTCTTGGTTTT
TTGAAATCATCGGGTCATAAGAATAACATCTTTTCAATGGTTCGTCAGTA
GTATGTTTCTTTTGCTCAATTTCAGAATCTGATTTTACCGAGTTTGGTCG
AATACGTGTCTCAGATTCCTTCCGTTTTTGTAAAGTCTCTTCAAGCTTTT
TCGCTTTTACTTTCTCctctttctgtttttgttcttcACGTAATCTCTCC
TCtgctttttctttatttaatttctcCTGGAGTTTTTTCTCCTCAACCTT
TATGACGCCTTCGTTGATCTTATTCTCAGATTTCAAACGTTCCAACAACC
AATTATGTCTCGGGAACTCCATGGCGTATCGGTTTCGGCTCACCAAGTCA
TTGTCTGTTTTATTGTTAACAATTTTCTTTACCTTAAAATTCTGTTTGTT
AGATTTGCTCATTTTCTGGTATTGATTACCAGGTTTGCTGTTTCCACCAG
CAGGGTTATCTCCAAACGAAATAACACCCAAGATATTGTCCACTAACTGA
TCTTCTAAAGTGAACCCATCCGAATGTTGACATTGAGTTCTTGACTTTTT
AATTGGTTGATCACAACATGGTTCCtttttttcgtttattttattgtttt
cctTATCCGACCTAGTTATCAATAGCTCGGTTTTGTCGGTCATTTTTTCG
ACAGTTTCCTCGTCCTTTTCTAACGTCTTTATCTTTATCTTTGAAAGTGA
TTTAACGACAGTTTCTGGTAGCGGCAATATCTGTTTTGGTTCTACAAGGT
TAGCTTTTCGGTTACACAAATCCTGtatgcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061875-exon-scaffold_361-1491911889:389559..390988 | TCONS_00061875-exon-scaffold_361-1491911889:389559..390988 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1510915933:389559..390988 | TCONS_00061875-exon-scaffold_361-1510915933:389559..390988 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1575043694:389559..390988 | TCONS_00061875-exon-scaffold_361-1575043694:389559..390988 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1491911889:391070..391096 | TCONS_00061875-exon-scaffold_361-1491911889:391070..391096 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1510915933:391070..391096 | TCONS_00061875-exon-scaffold_361-1510915933:391070..391096 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1575043694:391070..391096 | TCONS_00061875-exon-scaffold_361-1575043694:391070..391096 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1491911889:391151..392493 | TCONS_00061875-exon-scaffold_361-1491911889:391151..392493 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1510915933:391151..392493 | TCONS_00061875-exon-scaffold_361-1510915933:391151..392493 | Clytia hemisphaerica | exon |
| TCONS_00061875-exon-scaffold_361-1575043694:391151..392493 | TCONS_00061875-exon-scaffold_361-1575043694:391151..392493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:389559..392493 + |
Blast
The following BLAST results are available for this feature:
|
