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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061863 ID=TCONS_00061863|Name=TCONS_00061863|organism=Clytia hemisphaerica|type=transcript|length=2751bpRun BLAST on NCBI protein sequence of TCONS_00061863-protein >TCONS_00061863-protein ID=TCONS_00061863-protein|Name=TCONS_00061863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp MDDKKTIGIVDYVIFGALLLSSSLVGIYFGYKHRKRVTSAEYLLANKSMSRun BLAST on NCBI transcript from alignment at scaffold_361:249345..256941+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061863 ID=TCONS_00061863|Name=TCONS_00061863|organism=Clytia hemisphaerica|type=transcript|length=7597bp|location=Sequence derived from alignment at scaffold_361:249345..256941+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:249345..256941+ >TCONS_00061863 ID=TCONS_00061863|Name=TCONS_00061863|organism=Clytia hemisphaerica|type=CDS|length=25074bp|location=Sequence derived from alignment at scaffold_361:249345..256941+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061863 vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 1.502e-88 Identity = 188/536 (35.07%), Postives = 311/536 (58.02%), Query Frame = 1
Query: 205 DKKTIGIVDYVIFGALLLSSSLVGIYFGYKHRKRVTSAEYLLANKSMSWFTICIXXXXXXXXXXXXMGITTNIYMTGVTFSLHILTFLVPIILNAEFFAPIFRRLELISVNHYLELRFSRGVRFIGCFLFFLQYVIYLAIVLYAPSLALETVADVPLMATIITTGLVCTFYTTLGGMRAVIWTDVFQSMVMVIGLGTSLVIGVINIGSFEKIYNVTSEFKRFDI-DINPDPRGHQTVWGVTIGGTFSIMAAWTISQPTMQRVIAARSLGDAKKALYGAYVGLLLIGAFLTTLAIVIFATYAECDLLKSGKIKSPDQVLPYYVVDNFSHIPGVTGVFIACXXXXXXXXXXXXXXXXXXXXXEDIVKSFNPVLSETFQTRVSKIVACVLGVVITGLAFVVPLIGNSIIKLVIQLFGIVSGPYFGLFVLGIFFKKSNXXXXXXXXXXXXXXXXXMMVGQWFY--PPGKNLP-PVSMAQCTNVTKPDLKFIYPADPVYKDNIIADMVSFSYMWFGFITVVLTVFIGYLVSLCHGRCNKEE 1800
+ K + DYV+F AL SS +G++F K RK+ TS E+L+ + MS+ + +SL SF S+V V+G + +Y G +F + + +L I+L +E F P+F R + S YL+LRF++ VR+ ++ +Q ++Y +V+YAP+LAL V L ++ TG+VCTFY TLGG++AV+WTD FQ +VM++G T L+ G + G F + ++ R I D + DP T W +T+GGTF+ + + ++Q T+QR I+ ++ AK ALY +GL +I +++++ + +CD SG I +PDQ++PY+V++ F+ +PG+ G+F+AC FS ++ST++S++N+LA V ED VKS P LS+ T +SK + + GV+ T +A ++G +++ + + G+ GP GLF LGI F N GA G + G+ + + +G + Y P K P P+S QC K ++ P + I S SY+++ + + + G ++SL GR E+
Sbjct: 2 EVKNFAVWDYVVFAALFFISSGIGVFFAIKERKKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSGIISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGG-VVQASLSIHGMCGGPMLGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQC---IKSNVTATGPPVLSSRPGIADTWYSISYLYYSAVGCLGCIVAGVIISLITGRQRGED 533 The following BLAST results are available for this feature:
BLAST of TCONS_00061863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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