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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061828 ID=TCONS_00061828|Name=TCONS_00061828|organism=Clytia hemisphaerica|type=transcript|length=4147bp
CTTCATAGTTTTCAGGAcctcaaaagtgaattttcaatgtgctctgtaaa
attacaaaattgggcTGTTCTGTTGGTACACAAAAAGCGAGGTTAATCGT
TAGTAAGATACAAATTACCTATACATAAGTCTGTAGATCTTTCTGAAGAC
AAAATTATCTGTTTTGTACACATATTTGTACTGCTGCTAGAGACTTTGAC
TGACTTTGACTGTTGTCAGTCAGTCGGTTGTGTTCAGTTGTCTGGCGGTC
AACAGTCGTTTTGATAGAACTGCACAAGATTATACCAACATGAAACTTAC
TGAAAAAGCATAAGGAACATACCTGTTATTGTTTCTTTATGATCTTTGAG
TTTGGATTTGAGAAAAATCAGTAATCAgtccaccaaaacaaacaaaaaat
aatcataACATTTGTGTACaaaaaacaatctttaaaaggttggtgcattt
acagaaattacactgaataCTAAAAGTAATACTAAGAAAGTATAAAGACA
tttatattgtaaaaaaaatccaccaaaacaaaccaaaaacaaccaaaatc
taACAAAAGTTCTTCACTACTTGCCCCTATTGTCATTGAAGCGCCAAAAC
tgtaaataaaattagtttttgacgGTCGGCGCAGCAGACAACTTCATGCT
AAATTTTTTTCAGTCGGGACGAACAAAATTATTGAGCAAGCGAAGATATA
GCCATTGAACCCGACTGttgtcggcacatcaaagggccactactaaacct
ctccgatggtatattggtccgctcctttagagcTTTAGCGTGGGCGGccg
ccaatacgccatcggaatatcagataagtggTTCATATGTTAACAAAAGA
AACAGGAGGTGCAACTCAATTCCAATTGATTAGAAAACAACGTTAGTAGA
GATGAGACTTTTTAAGAAATTGATGTATTCGCATAAAAGATATGTATAAA
AAGCGCTGTGCTAAAGTTTTGTTTCAGATGTTCAAATTGGGCTGttccaa
aaaatttccatacagggggatgGACGaacttttcaagtcaaaacaaattt
cttggaaatgtgtggaggatacccctggaaaatagcaaagtttgcaaaaa
agaccccggaaaatttttttaagacgCAACGATATGTATTTCATTCTAAA
TTATAAGTAAATAAGGCCTGACGTNtttcttggaaatgtgtggaggatac
ccctggaaaatagcaaagtttgcaaaaaagaccccggaaaatttttttaa
gacgCAACGATATGTATTTCATTCTAAATTATAAGTGAATAAGGCCTGAC
GTGGGGGCaacccaaaaaaacaaaccaaataaaatatgCAATGGTCATGC
AAAACGACCCGACAGAAGAAaacaatgtaaacaaaaatatgaAAGTGTCA
AAATGTGACCAAATAGAGACATAATGAGAAACTGGTGAGTTATGTCCCAG
ACAGCCTTCTAACACATCCTAACATTTTCTTTCACAAGTGCGAACAGCTC
TAGCTATAACACTATATACACGTTAAAAACACTTCCATCATTATGCTTGC
TTGTTTAAGCAAGCATTTTCAATAAATCTTCAGATAAATGATGGTTACGC
CAGGCATTAATCAACGTAAGTATGATATTCTTCCAGCAGCGCGTTAGACA
TCTTTACCATTTGTGGTGTTGTGGCTTTGAAGTCTTCAAAAATAAGAAAC
TGTAGCATCGTCATTGATAGCTCTACATTTTTAGGGTAATCAATGTTAGG
TAAATAGGACGACATCAAACCAACAACTGCTTTAGCAAAATCTTCTTCAG
AGAAGATTAGCATTTTGTTGAAGTACAAATgcattttaacattttcaaca
AGGAGGATTGGATGTGAGCTGGCAACTTTGGATACCGCCTTTTGTGGGTC
TTTCTGGTCCTGTAAATTAAAATATTAGCAACATAGATATATTGGCTTTT
ACGATGCATGATTTTTTGAATTGGGTTCTTCCAGAAAATATTGTTACAGG
GGGGTGTGACTGTTGGAGGAGGGGTAGTAAAAGATTGCAAGTTATCTTca
agtttttctaaatttaagaaaattattttatatatttatgaCCATTGCCC
TCAAGTCCTAAAATAAGtcatttatttctaattttgagaatttcaccAGT
AAAGATTTTCCTATTTAAATTTCGGGTTTTTACAGTGTTCTACTGCTAtg
ttttttttccggccggtgaTAAAGGAGACTTTGAGAAGAAAATTCATAAC
AAAGTGTTTGTGGCCTTGATTTAAATTCGAAGCAAGGGAGCATGAAAGGT
TTGGAtcaaaaactaaataaataagAAAGTATAAACGTACGTAAACAAGT
TTATTACTTGGTTCGATAACCTCCGGTTTTTATGATGCTGTCAACTCACT
TGTTCATGATGTCCATAATTTTGTCGATGTCGTCCGGTGAGGAAAATTGA
TGAAAAGGGTTTGCTTAACTCTTTCGGAGAATTGTTTAAAGATTTCATGT
TCACTTTTGCGATCCAGGGCTTGTTGTCAAAGTCTCTTCTCGATGGTATT
GAACGAATTCTCAATGGGTTTAGATCCGGGGATCGTGCAGgaattttgaa
aacttgtacCTTGTGTCGGTCGAAAGCGTCAAGTGCAACTCTTGAGTTTT
GTCTGGGGAAGCCGTCTTGAAGGATCCGTCGTGCGTGCGGTTCAACACTT
CTCTCTAATACATGGGCCAACTCCTCGTCTGTGATTTTAGCCATCTTTCT
ACCCGTGATACTCTAAAGTATTGCTTGCATGCGATGACACCGTTTCGGTA
CGAAATGCCAACCATGAAGTTGTTCCTTTTGTCCTTTCATTGTCACCTTA
AGACCCTCAGACTTTAGTCTCCATTCCCTGGCGGAGGGGGCTCGAGCCTG
ATCTAGGGGCTTTGTTTTGAATGCAAAACCCACTCCACCAATATACATAG
ATAAATACTTTTTCCAGAAGTCAGCACACTTGAGATTTTTTACCCTCCTA
CAGAATTTAACACGATTTTCACTCATTCTTCCTGGACTGTCTGTATTTAT
ATCCGTTGCTATTCAGGCACCGCCTGGCAGTCTTGTTCGATACAGCTTTT
GCAAGTCCTGCGTGAGTTGCCACTCGCTTTGATGTGAAACTTCCTTCCGA
TTTACGTAATTCATGTACTGATGTTAGCGCTGGCCCCTCTCCGAAAGTTT
GCGTGGTCTGCCCGTGTTAAACTTGCGGCGATCAGCTCTTGCCGGCTGCC
CCAGGCTGATGTTGGAATGGCGGTAAATACTTGATCTTGAATACCGTTTA
TCAAACTTTCTCAAAATGTTTATCATCTGTATACCAGCTTCTCGCATGGC
CAACATAGTTCTATATATGCTTCTGAACCAAAATAAACACGATTATATAA
TGTCTCAAGTCTTTGCGTGAAACGAAAGTGCtatcagatcaaaacaaacc
taTGAAAATGACTAAGCCTTTGAAATTTAAAGACAATCAAGGACAAGAAT
GGTTAGACAGACAGGACAGAGGGATATTAGAAGCTGTCTCACCCCTCCCC
CAATGGCAATGTTCAATGAACGATGAAACAGTCGTACAAAATGATGCCTT
TTTAGGGGGACCTTTATCCAATGTTTTATCAGTGATTTCAAGTGGTTTTC
TAAAACATATATGCCCTTGGTTGTAGTTTTCGCAGATACGTCCGCCATTT
TGTTCATCATCTTCTTTCATTCTTATTTCGTTTATTATTTGATTTAGTGC
CCAAAGGCTGTGTTCTGAAAAATCATTGGATTGTATATTAAGAGCTGCTC
AAAATTAGGCTAACTCCTCATTTCGCTTCTTCGCAtttacatacacgttt
ttttatgagaacatccagaatttttgaagcttttggatgttcttaacttt
ttgagtttcaagcctaaaaatgtttttaacatgctcttattttccccatt
ttttatgcatttttgtccattttcctaagaaattggctgttttcgtgtcc
gcgaagccttaacatgttcctaacttgttcttaacattttggctatcgaa
gtcttatgttcttatacagtttgttcttataaaaaacgtatcaTATCACT
GTTTACAAGGGTCTTGTCTTGAATCGAAAGGTAgaaattgttttttg Run BLAST on NCBI protein sequence of TCONS_00061828-protein >TCONS_00061828-protein ID=TCONS_00061828-protein|Name=TCONS_00061828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MAKITDEELAHVLERSVEPHARRILQDGFPRQNSRVALDAFDRHKVQVFK
IPARSPDLNPLRIRSIPSRRDFDNKPWIAKVNMKSLNNSPKELSKPFSSI
FLTGRHRQNYGHHEQVS Run BLAST on NCBI transcript from alignment at scaffold_360:22649..26795 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061828 ID=TCONS_00061828|Name=TCONS_00061828|organism=Clytia hemisphaerica|type=transcript|length=4147bp|location=Sequence derived from alignment at scaffold_360:22649..26795 (Clytia hemisphaerica)
caaaaaacaatttcTACCTTTCGATTCAAGACAAGACCCTTGTAAACAGT
GATAtgatacgttttttataagaacaaactgtataagaacataagacttc
gatagccaaaatgttaagaacaagttaggaacatgttaaggcttcgcgga
cacgaaaacagccaatttcttaggaaaatggacaaaaatgcataaaaaat
ggggaaaataagagcatgttaaaaacatttttaggcttgaaactcaaaaa
gttaagaacatccaaaagcttcaaaaattctggatgttctcataaaaaaa
cgtgtatgtaaaTGCGAAGAAGCGAAATGAGGAGTTAGCCTAATTTTGAG
CAGCTCTTAATATACAATCCAATGATTTTTCAGAACACAGCCTTTGGGCA
CTAAATCAAATAATAAACGAAATAAGAATGAAAGAAGATGATGAACAAAA
TGGCGGACGTATCTGCGAAAACTACAACCAAGGGCATATATGTTTTAGAA
AACCACTTGAAATCACTGATAAAACATTGGATAAAGGTCCCCCTAAAAAG
GCATCATTTTGTACGACTGTTTCATCGTTCATTGAACATTGCCATTGGGG
GAGGGGTGAGACAGCTTCTAATATCCCTCTGTCCTGTCTGTCTAACCATT
CTTGTCCTTGATTGTCTTTAAATTTCAAAGGCTTAGTCATTTTCAtaggt
ttgttttgatctgataGCACTTTCGTTTCACGCAAAGACTTGAGACATTA
TATAATCGTGTTTATTTTGGTTCAGAAGCATATATAGAACTATGTTGGCC
ATGCGAGAAGCTGGTATACAGATGATAAACATTTTGAGAAAGTTTGATAA
ACGGTATTCAAGATCAAGTATTTACCGCCATTCCAACATCAGCCTGGGGC
AGCCGGCAAGAGCTGATCGCCGCAAGTTTAACACGGGCAGACCACGCAAA
CTTTCGGAGAGGGGCCAGCGCTAACATCAGTACATGAATTACGTAAATCG
GAAGGAAGTTTCACATCAAAGCGAGTGGCAACTCACGCAGGACTTGCAAA
AGCTGTATCGAACAAGACTGCCAGGCGGTGCCTGAATAGCAACGGATATA
AATACAGACAGTCCAGGAAGAATGAGTGAAAATCGTGTTAAATTCTGTAG
GAGGGTAAAAAATCTCAAGTGTGCTGACTTCTGGAAAAAGTATTTATCTA
TGTATATTGGTGGAGTGGGTTTTGCATTCAAAACAAAGCCCCTAGATCAG
GCTCGAGCCCCCTCCGCCAGGGAATGGAGACTAAAGTCTGAGGGTCTTAA
GGTGACAATGAAAGGACAAAAGGAACAACTTCATGGTTGGCATTTCGTAC
CGAAACGGTGTCATCGCATGCAAGCAATACTTTAGAGTATCACGGGTAGA
AAGATGGCTAAAATCACAGACGAGGAGTTGGCCCATGTATTAGAGAGAAG
TGTTGAACCGCACGCACGACGGATCCTTCAAGACGGCTTCCCCAGACAAA
ACTCAAGAGTTGCACTTGACGCTTTCGACCGACACAAGgtacaagttttc
aaaattcCTGCACGATCCCCGGATCTAAACCCATTGAGAATTCGTTCAAT
ACCATCGAGAAGAGACTTTGACAACAAGCCCTGGATCGCAAAAGTGAACA
TGAAATCTTTAAACAATTCTCCGAAAGAGTTAAGCAAACCCTTTTCATCA
ATTTTCCTCACCGGACGACATCGACAAAATTATGGACATCATGAACAAGT
GAGTTGACAGCATCATAAAAACCGGAGGTTATCGAACCAAGTAATAAACT
TGTTTACGTACGTTTATACTTTcttatttatttagtttttgaTCCAAACC
TTTCATGCTCCCTTGCTTCGAATTTAAATCAAGGCCACAAACACTTTGTT
ATGAATTTTCTTCTCAAAGTCTCCTTTAtcaccggccggaaaaaaaacaT
AGCAGTAGAACACTGTAAAAACCCGAAATTTAAATAGGAAAATCTTTACT
ggtgaaattctcaaaattagaaataaatgaCTTATTTTAGGACTTGAGGG
CAATGGtcataaatatataaaataattttcttaaatttagaaaaacttgA
AGATAACTTGCAATCTTTTACTACCCCTCCTCCAACAGTCACACCCCCCT
GTAACAATATTTTCTGGAAGAACCCAATTCAAAAAATCATGCATCGTAAA
AGCCAATATATCTATGTTGCTAATATTTTAATTTACAGGACCAGAAAGAC
CCACAAAAGGCGGTATCCAAAGTTGCCAGCTCACATCCAATCCTCCTtgt
tgaaaatgttaaaatgcATTTGTACTTCAACAAAATGCTAATCTTCTCTG
AAGAAGATTTTGCTAAAGCAGTTGTTGGTTTGATGTCGTCCTATTTACCT
AACATTGATTACCCTAAAAATGTAGAGCTATCAATGACGATGCTACAGTT
TCTTATTTTTGAAGACTTCAAAGCCACAACACCACAAATGGTAAAGATGT
CTAACGCGCTGCTGGAAGAATATCATACTTACGTTGATTAATGCCTGGCG
TAACCATCATTTATCTGAAGATTTATTGAAAATGCTTGCTTAAACAAGCA
AGCATAATGATGGAAGTGTTTTTAACGTGTATATAGTGTTATAGCTAGAG
CTGTTCGCACTTGTGAAAGAAAATGTTAGGATGTGTTAGAAGGCTGTCTG
GGACATAACTCACCAGTTTCTCATTATGTCTCTATTTGGTCACATTTTGA
CACTTtcatatttttgtttacattgttTTCTTCTGTCGGGTCGTTTTGCA
TGACCATTGcatattttatttggtttgtttttttgggttGCCCCCACGTC
AGGCCTTATTCACTTATAATTTAGAATGAAATACATATCGTTGcgtctta
aaaaaattttccggggtcttttttgcaaactttgctattttccaggggta
tcctccacacatttccaagaaaNACGTCAGGCCTTATTTACTTATAATTT
AGAATGAAATACATATCGTTGcgtcttaaaaaaattttccggggtctttt
ttgcaaactttgctattttccaggggtatcctccacacatttccaagaaa
tttgttttgacttgaaaagttCGTCcatccccctgtatggaaattttttg
gaaCAGCCCAATTTGAACATCTGAAACAAAACTTTAGCACAGCGCTTTTT
ATACATATCTTTTATGCGAATACATCAATTTCTTAAAAAGTCTCATCTCT
ACTAACGTTGTTTTCTAATCAATTGGAATTGAGTTGCACCTCCTGTTTCT
TTTGTTAACATATGAAccacttatctgatattccgatggcgtattggcgg
CCGCCCACGCTAAAgctctaaaggagcggaccaatataccatcggagagg
tttagtagtggccctttgatgtgccgacaaCAGTCGGGTTCAATGGCTAT
ATCTTCGCTTGCTCAATAATTTTGTTCGTCCCGACTGAAAAAAATTTAGC
ATGAAGTTGTCTGCTGCGCCGACcgtcaaaaactaattttatttacaGTT
TTGGCGCTTCAATGACAATAGGGGCAAGTAGTGAAGAACTTTTGTtagat
tttggttgtttttggtttgttttggtggattttttttacaatataaaTGT
CTTTATACTTTCTTAGTATTACTTTTAGtattcagtgtaatttctgtaaa
tgcaccaaccttttaaagattgttttttGTACACAAATGTtatgattatt
ttttgtttgttttggtggacTGATTACTGATTTTTCTCAAATCCAAACTC
AAAGATCATAAAGAAACAATAACAGGTATGTTCCTTATGCTTTTTCAGTA
AGTTTCATGTTGGTATAATCTTGTGCAGTTCTATCAAAACGACTGTTGAC
CGCCAGACAACTGAACACAACCGACTGACTGACAACAGTCAAAGTCAGTC
AAAGTCTCTAGCAGCAGTACAAATATGTGTACAAAACAGATAATTTTGTC
TTCAGAAAGATCTACAGACTTATGTATAGGTAATTTGTATCTTACTAACG
ATTAACCTCGCTTTTTGTGTACCAACAGAACAgcccaattttgtaatttt
acagagcacattgaaaattcacttttgaggTCCTGAAAACTATGAAG Coding sequence (CDS) from alignment at scaffold_360:22649..26795 >TCONS_00061828 ID=TCONS_00061828|Name=TCONS_00061828|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_360:22649..26795 (Clytia hemisphaerica)
ATGGCTAAAATCACAGACGAGGAGTTGGCCCATGTATTAGAGAGAAGTGT
TGAACCGCACGCACGACGGATCCTTCAAGACGGCTTCCCCAGACAAAACT
CAAGAGTTGCACTTGACGCTTTCGACCGACACAAGgtacaagttttcaaa
attcCTGCACGATCCCCGGATCTAAACCCATTGAGAATTCGTTCAATACC
ATCGAGAAGAGACTTTGACAACAAGCCCTGGATCGCAAAAGTGAACATGA
AATCTTTAAACAATTCTCCGAAAGAGTTAAGCAAACCCTTTTCATCAATT
TTCCTCACCGGACGACATCGACAAAATTATGGACATCATGAACAAGTGAG
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061828-exon-scaffold_360-1491911889:22649..26795 | TCONS_00061828-exon-scaffold_360-1491911889:22649..26795 | Clytia hemisphaerica | exon |
| TCONS_00061828-exon-scaffold_360-1510915933:22649..26795 | TCONS_00061828-exon-scaffold_360-1510915933:22649..26795 | Clytia hemisphaerica | exon |
| TCONS_00061828-exon-scaffold_360-1575043694:22649..26795 | TCONS_00061828-exon-scaffold_360-1575043694:22649..26795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:22649..26795 . |
Blast
The following BLAST results are available for this feature:
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