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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061817 ID=TCONS_00061817|Name=TCONS_00061817|organism=Clytia hemisphaerica|type=transcript|length=1191bp
GAAAACACATAATTTTCAAACCAAGACAGAATAGTGTTGTTCAGTTGGGT
ATTTCGTTTGATTGGATGTTTGCAGTGACTGGTATGAGATCCAAAAGGAA
AggacgaattttcactcaaCCACCTTCACTAGTGGATATAGCAGAGTATG
AGAAGGAGATGAATGGGGAAACCAGCCCTGcaccaaacaacaacaacaat
gaaGAATATTCACCAGACTCCAAAAATGATGATACGCAACAAGAAGAAGA
CGAAGAATTTTTGAATATCGAAAATAGCGAGGAAACAAATGCTAACGAAA
ACGAAGAACAGAATGCGAGTTTGAACGACAAACCGTCGTCTAATAACGAG
AATTCGTCGGCTGATGAAGTTATTGCCGAAGAATCGGTAGTCAAAACTGA
GAACCTAGAAGCTTCAGAAGAAGCGCCCTTAAATGAGGGTTTAGAGGAGG
GCGTTGACGCCCCTGAGGGAAGCACTGAACGGAGATTAAGTTGTGTGTCA
GTCGAAGTTGTTCCAGATATCGTCGAACAAGTTGAAGAACTGGAACCAGT
TCAAGAGATTTCCGTTAACGAAGCGGATGACGTCACTATCGATGCCCTAC
ACCCACccggaaatttcaaacttgaatCAGTTACTGAAGAGACAGAGGAA
GAACTTAAAGCGGATGGGTCAGGACGATCCCCTCAAATTCGAAGACATAA
GTTGGGTGATTCACTATTGAATACCAATCAAACACAATCTTTGACAGACC
TTCCACCCATCCCACCCAAACGGGTGGGAATTTTAAAACGACAGAACGCC
AAAAAAGACCGCCCACTTTCGgacagttttgaaaatttgaagatggTGGA
GAATCAGGGTATTCTTGACTTATATAACGGACAAAGTATCACGCCCTCTT
CACCGCCCTCATTGAATAGAGGTCATAGCTTGGATGCATTGATGACTGAC
CGTCCTGATGGCGTTTCGCCCTCGAGCAGTCAAATTAGTTTGACAGGCGA
ACGATGTGATAGTCAAGAATCGCTCACAGCTTCCGATTGCGAGTCGCCGC
GATCGCGTTCTGAAAGCGAACGCATATCATTATACTCGAACCGCGCCTCC
TCTCTTTCATTGAACGATGTACACATGTCACGAACTTCCTCCACTTCATC
AGCTGAGGATTTCGGTAAACATTCAAAGAAGAGTAGTTCNC Run BLAST on NCBI transcript from alignment at scaffold_360:269728..274014- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061817 ID=TCONS_00061817|Name=TCONS_00061817|organism=Clytia hemisphaerica|type=transcript|length=4287bp|location=Sequence derived from alignment at scaffold_360:269728..274014- (Clytia hemisphaerica)
GAAAACACATAATTTTCAAACCAAGACAGAATAGTGTTGTTCAGTTGGGT
ATTTCGTTTGATTGGATGTTTGCAGTGACTGGTATGAGATCCAAAAGGAA
AGGACGAATTTTCACTCAACCACCTTCACTAGTGGATATAGCAGAGGTAA
TTATTTGTCTGTCTGTCTTAACACGCGTTTTTATAGGCCATTTGATAGTC
GCAAAGCGTAATGGGTAATCAGGACAACTGCGCGCTAATGACGACTTACC
ATTGGTCCAAAGTTTTGAAATCTAGCCAACAGAAAGCTGTTATGGAGGTG
CAATCACTCCTGATTACCCATGATTCATTTCGACTGTAAGATAGCCTATA
AGAAATTCGTTTTCCATTTTAAATCATAAGATGGATATTCTCAACTTTTT
TGGGAAAAACCAACCTAAAAATGTTTATATGGTATTCTTAGGTTAAGATC
CAAAGTCAACCTAAATTTAAGATGTAATAGTTGTGAAAGTTTTGAGGGAT
AATTTGGCAATTTACAGTNTTAAATTTAAGATGTAATAATTGTGAAAGTT
TTGAGGGATAATTTGGCAATTTACAGTTAAAAATGCTCTTAAATGACATT
CTTAGGTTCTGTTGCCTAATTCCATAACAGTGGTATGTATATGTATAGCA
TATTCTTAATGGCCAATTTCACCATGAACATTCTTATAGAGTATAAGCGT
GTATCCTTTTGTACCATTACCTTCGCCCAGACTTCTTTTACACTTTTCTG
ATTGTGGAATGCCGTTTAGGAACTATGACCGAGTGGTCTGATTCATCACA
ATAAGGGGTAATCCCGGCCCATAAAAGAAACCAAAAACAATCAAAATGCT
GTATATAGTCCTAGATTAGTTGGCTATCCACGTAAATTTATTTTGCATAG
TCTGCATGATATATGAACGAGTCAAGTACTTTGGTTGGTACGAAATCGTT
TTTAATTTAAATGGTTCGTTGAATCCTTTTTTTTCACGTAAAGATCATGG
TGGTACGTATGGAACAGTGGAGTCTTCATTACTCGAAGCTCTCTGGAATG
TCTTCTTCACTCGAACAAGTTTGCTGGTTCCTTCAGTGTTAACAATGCCT
TATAAAAATATCTCCGTATCTGGAAGTTTCCATAATTCGAACAAATTTGC
GTTCTCCATGCGTGTTCGAGTTATGGAGACTCTACTGTACGAAGTAGAGT
TATTAAGTTTTCTTAAAGTCGATTATTTTCTCAAATATTTACTTTTAAAC
ATAAGCTCTTCCAAGTGAAATGCTTAATCATGGTTCATCTTTTCGAGTTA
TTAACGTATATACAAAATTGTTCAAATACCTCTGCTCATTGTTTGCCACT
CAAAGAAATTTGTTTCGCACCTACTTATGCCAGATTTTGAGCAGATTTTC
AAACGTATCAAATTATTTAGTGCTATAGAGAGTATTATTATATAACATTT
CGTGACATTGCACATTTTTTCCCCTTCTCACACAATGTCAATTCTCCATA
CTAAAATATCTCTGTAAATAGGTCATTTCACAGTCGAAATGGATCATGGG
TAATCAGGATTGATTGCGCCTCCGTAACGGCTTTCTGTTGGCTAGACGCA
ATAAGGTTCAAAAATTCTTAAAAATTTGGACCAATAGTAAGTCGTCATTA
GTGCGCAGTGGTTCTGATTACCCATTACGCTTTGCGACTGTGAAATGGCC
TATTACCAGGAATCGTCTTAGGCATTAAAATCATTGTCGTAGTCATTTTA
TTCAGTAAAAACTGTATTAGTGGCGAGGCTTGTCAACAATTGCAGCGGCT
TCTTTCTTTCGAAATCGAACGCGAGGAGGAAAGAAGGGAAGAAAAAAAAC
TTTTCATACTGATGCCTCCGAGGCCAACATTATTTCTACCCAATTCCAAA
TTCCAAAATATAGAAAAATAGAATGGTAACACTCTTACATCTTTCGTCCC
TTTGAATGTATCATTTTTCCAAAAATGGAATGATAACATCATAGATTTGT
CCTGAAGCAGGAAGAGAAAAGTTGTTGATACAATTAGACTGTGATGATGG
ATTATTTCCGCCATGTTTGTTGTAGTAGTGTAAAGACACACAGGCTTGTA
GTAGAGTATAAAGGCTGTACATATGCTGTCTTTTTTGCTATTTTTAAGTG
TATAAAGTTTTTTGAAATCTTCTTGGTTATTGGTTGATCATCATGTTGTT
GTCCGTGTGAAGTTTAGTCTCGAAATACTGTAGTTTAGCCTCGAAATACT
GTAGTTTAGCCTCGAAATACTGTAGTTTAGTCTCGAAATACTTTACTTTA
GCCTCGAAACACTGCAGTTTAGCCTCGAAAAACAGGTACATGATAAAATA
ACCAAACAGAAAAAAGAGACACCTTTTCTCGCGATATTACGACGCTCAAG
CATTCCTAAATCTCGCATACTGATGATTTAACTTCAACTTTCGCCGTTAA
AAGCGTTAACCTTCTCTAGTTGTTTTTATTTGTTTAAAATGGTTTGTTTC
CAGCTAAAAGATTATTTTCTCCGTTTAGCTAACTCTTATAAAATGACAAA
AGAATTGATCCATATATCTCTTTAAAATGTAACCTTTTTTCCATAGTCGA
TTCGTTCAAGTCTGGAACGCAGGACTTGACCTTGTTCAAGTGCATTCAAT
ATGTTTTGACCAAAATTTTAAAAATTGAAATCAGATACCTTTTTTAGTAA
AAAGATATCGGTTGTTTATTTATGAGATTTTTTCTCACGGTAATAGCAAT
GCTCAACTCAGTATGATACCACTGTACCAATTCACAGTACAGTTATACGA
TATGCTAGTGAAAATGTTATCCAGAGGTTTTCTATTTCGCTTATTTTCAC
CTAACCCTGGCATTTGTTTACACTCTAAGATAAAGTCAATTAATAAGTTT
ACTTTATACACCCACTGACCAGAAGCACTCGTGATGTTTTAGCTTTTTCT
TTAGCTTACTTTTTATTTTAAGAATTGAGAGGAGCTATGTCCATCTTTTT
CAATTTCACCCGAAAATTTTTACTGTTTTCCTGGTTTCCACTCCTTATAC
CCTTCTTCGTTCTTAATTTTAGTATGAGAAGGAGATGAATGGGGAAACCA
GCCCTGCACCAAACAACAACAACAATGAAGAATATTCACCAGACTCCAAA
AATGATGGTATGGAGATCATTTTCAAACCGCTTTGTATGTCCGATTAAAA
GACAACTTTTTCTCGAAATTTAATCTTAAAAACTTCATTTTATGTTATTC
GAAATTAGCTTGTTGATTCCATCACGCTGCTGATCACATACCTAGTAATG
AAACTGATCTCTCTTTTCCTCTCTAAGATACGCAACAAGAAGAAGACGAA
GAATTTTTGAATATCGAAAATAGCGAGGAAACAAATGCTAACGAAAACGA
AGAACAGAATGCGAGTTTGAACGACAAACCGTCGTCTAATAACGAGAATT
CGTCGGCTGATGAAGTTATTGCCGAAGAATCGGTAGTCAAAACTGAGAAC
CTAGAAGCTTCAGAAGAAGCGCCCTTAAATGAGGGTTTAGAGGAGGGCGT
TGACGCCCCTGAGGGAAGCACTGAACGGAGATTAAGTTGTGTGTCAGTCG
AAGTTGTTCCAGATATCGTCGAACAAGTTGAAGAACTGGAACCAGTTCAA
GAGATTTCCGTTAACGAAGCGGATGACGTCACTATCGATGCCCTACACCC
ACCCGGAAATTTCAAACTTGAATCAGTTACTGAAGAGACAGAGGAAGAAC
TTAAAGCGGATGGGTCAGGACGATCCCCTCAAATTCGAAGACATAAGTTG
GGTGATTCACTATTGAATACCAATCAAACACAATCTTTGACAGACCTTCC
ACCCATCCCACCCAAACGGGTGGGAATTTTAAAACGACAGAACGCCAAAA
AAGACCGCCCACTTTCGGACAGTTTTGAAAATTTGAAGATGGTGGAGAAT
CAGGGTATTCTTGACTTATATAACGGACAAAGTATCACGCCCTCTTCACC
GCCCTCATTGAATAGAGGTCATAGCTTGGATGCATTGATGACTGACCGTC
CTGATGGCGTTTCGCCCTCGAGCAGTCAAATTAGTTTGACAGGCGAACGA
TGTGATAGTCAAGAATCGCTCACAGCTTCCGATTGCGAGTCGCCGCGATC
GCGTTCTGAAAGCGAACGCATATCATTATACTCGAACCGCGCCTCCTCTC
TTTCATTGAACGATGTACACATGTCACGAACTTCCTCCACTTCATCAGCT
GAGGATTTCGGTAAACATTCAAAGAAGAGTAGTTCNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061817-exon-scaffold_360-1575043694:273869..274014 | TCONS_00061817-exon-scaffold_360-1575043694:273869..274014 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1575043694:270858..270942 | TCONS_00061817-exon-scaffold_360-1575043694:270858..270942 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1575043694:269728..270687 | TCONS_00061817-exon-scaffold_360-1575043694:269728..270687 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1510915933:273869..274014 | TCONS_00061817-exon-scaffold_360-1510915933:273869..274014 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1510915933:270858..270942 | TCONS_00061817-exon-scaffold_360-1510915933:270858..270942 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1510915933:269728..270687 | TCONS_00061817-exon-scaffold_360-1510915933:269728..270687 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1491911889:273869..274014 | TCONS_00061817-exon-scaffold_360-1491911889:273869..274014 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1491911889:270858..270942 | TCONS_00061817-exon-scaffold_360-1491911889:270858..270942 | Clytia hemisphaerica | exon |
| TCONS_00061817-exon-scaffold_360-1491911889:269728..270687 | TCONS_00061817-exon-scaffold_360-1491911889:269728..270687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:269728..274014 - |
Blast
The following BLAST results are available for this feature:
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