TCONS_00061815 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061815
Unique Name	TCONS_00061815
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	697

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_360:242975..247051-

transcript sequence

>TCONS_00061815 ID=TCONS_00061815|Name=TCONS_00061815|organism=Clytia hemisphaerica|type=transcript|length=697bp
TGCCCATTATGAAAGCTACTGCTCTTCCAACAAAATCGATGGTAAAACTG
CGAGTTTCTTGGCAAAAAGAGGCAATTCATTCAGGAACTTTAATAAGGGG
TCTACGGACAGTTTCATAAGAGGAGTCCCCACCACAAGCAGTGTTAACCG
TGGAAATCGTCAAAGTCAAAGGTCTCCGGTCATCACCAGAAGACCATTAA
CATTGGACCACATGAGTGAGCCAAGCTCTGATTATGACTCTTACAGTATG
CAGCAATCAAAGAACCTGTCCTCTTCCAGGACATCCCTTGATTCTCTTGG
AATGACTCTTGAAGGAGATGACACAGACTATAATGCTTACAATCACTTTA
ATGATTCTGAAtatGATTCAGATTTGGATGCCGAGGACGTTCCTGAAACA
TGGAGTGAACTCGTTGATAAAAAAGTCCAACGTAAAATGCATGCTAAAGA
TATTAAGCGGCAAGATGTAATTTATGaacTGATACAGACTGAAGCACAAT
ATGTACGGACACTTAACGTTATGAAAAAGATCTACATGAATGCTttggtc
tctttgaattttgATGACAGAACTATACATACAATTTTTCCAGAATTAGA
GGAATTAATAGACCTCAATGGCGGATTCTTAAAAGCAATGAAGCAACGAC
AAGAGGAAAGCCAAAATTATTGTATTGAAAGCATTGGCGATATTCTG

Run BLAST on NCBI

transcript from alignment at scaffold_360:242975..247051-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061815 ID=TCONS_00061815|Name=TCONS_00061815|organism=Clytia hemisphaerica|type=transcript|length=4077bp|location=Sequence derived from alignment at scaffold_360:242975..247051- (Clytia hemisphaerica)
TGCCCATTATGAAAGCTACTGCTGTCAGTATTACTTTTTATTTCTCATTT
TCAGTGTTTTTAAAAGCTCATTATCATAACAAGACTAATATCTCAGACAA
ATAGATTTACTCTTTAGAGATGCACTCTGAAGCCACTTGAATACCCTTTT
TTATTCAAAGAAAGTTTGTTAATAGCTCAATTCTGTTAGCCAGAACCAGA
AAGAAAAGATATTGATAAATGATAAGGCATCACTCTTTTAAATGTGGTCA
TACTTGCAAAGAAAATTTAATATGTCAGAATGGTTTGATTTTTCATGATT
ATCTCCTGTTATGTTCTTTTCATTTTTATCTTTGTAGCTTCCAACAAAAT
CGATGGTAAAACTGCGAGTTTCTTGGCAAAAAGAGGCAATTCATTCAGGA
ACTTTAATAAGGTGGGGCTCATTTTGTAATTTTTAGTAACTGAACTTTCA
TTATTTCTTACTATGATATTTAAAAACACAATCATCACTCACTAAATCAA
CCCTTTATGAAAGAAAATCATTGATGGCAAAGAGTTCCTTGGAATAAGCA
GTATATATTTTGTCAAGTAATAATTTGATAATTATGGAAGCCATAAACCT
TCTTATCATTTTGTTATGATCAGGGGTCTACGGACAGTTTCATAAGAGGA
GTCCCCACCACAAGCAGTGTTAACCGTGGAAATCGTCAAAGTCAAAGGTC
TCCGGTCATCACCAGAAGGTTTGTATTATTATAGTGATTCTAAACAACTC
CCCTGCTGACTTAACTTAAAAAAATATGAAAACTGTCTCCTAGACAAGTG
CTAGAAAAGTTTTTATTCTGCTCCAGGTTTGCATTAGGATTTTTAAATTT
GAAGAAAGTTGTACTTGATTGATAGCCTGCTCTAATATAAAACCTTGGTG
TAGAGTTTGTCTAGATATCTGCACTTAAATCAAAATAAGAAATTGCAGTC
CAAAACACCTTTTTGACCATAGTCACGCAGTCTGGCGCATGCCACTTTAT
TATTTAATTTACCACCCTTAACTCGATCCAATCCTTTTTTTACACTTTTT
TCTATTGTCGTTAGGTGCGAAAAAAAGGCTGGGACGGTTTTAGGGTGGTA
AAATGGACAAAAGCATTGGACAGTAGCATTGGTGGCTACAGTCTAAAAGG
TGTATTGAAAAAAATCTTTAATATTATTCCCACTTCTTCTTTTAGACCAT
TAACATTGGACCACATGAGTGAGCCAAGCTCTGATTATGACTCTTACAGT
ATGCAGCAATCAAAGTAACCATTTCTTGTTTTATTTACAAAGCGTATGTT
TATGTTTAACCCCAAGGAAACCCATTTTGAAACTGGTTTTTGATCTCATT
AGAAAGAATTTCAAAAATCTTTTGAGAGTTGATTATTTCATAATTTTGTT
ATCTTTTGAAATAATTCAATGTTTGCTTATTAAACTATGGGGTCTTTTTT
GAGAAAGTTTTGTAGTCTGCTAATTATTTCTTAAAACTAAAGAGCTTTAA
AGCTATGTAATTTTAACTAACCTAAAAAACAAAAATTGTTTGTTCTCCAT
CAGTTAAACAAAAACATCTTTTGAGGTGGTGATCTCTGTATAAATTTTTC
AATTTTTTCTCCTTGAGCTCACATAGCAAATACATTATTTTACAAAGTTG
AAGAGTTTTTCTTTTGCAAAATGAAAAGGGCAAGAGCATTATCATTTAGT
TATGATGGTGCTGTACCATCAAATTTTTTACGCAAAAGGTTTAATAGACA
AAGTAGCATTTCATTGTAAGTATTTAAAAATTATTCTATGGATCCTGAAT
TGCAGCCTCCACCACTACACATTATTATTTTAATCTATCTTCATGATTAC
TCATTTTTCAAACGTTTCTACTCAATTTTTGTATTACAGGAACCTGTCCT
CTTCCAGGACATCCCTTGATTCTCTTGGAATGACTCTTGAAGGAGATGAC
ACAGACTATAATGGTAAGTGGCCTAACTCTCTTCAAATTCTTTAAAAACA
AATAGAATGTAAATGCACACTTCACTCTGTCCTAGTGAATTTTGATAATG
TCAAAAAGCATCATACATTCATGTCACTCTCTAAAGATCTTATTCAGACA
GAAATTCTTCTATTTTTGTTTTGAAACACATATACCTTTGGAACTGTTTT
TCACGGGAACTGGTATTCACAGTCGAAAAGAAAAATCAGAAAAAATGCAT
TTCGTGGGTTTTAATTTTTGCGGTTTTGCCCTTTTTTGGACAAATTAATT
TCTTTCATTTTCCTAGGGATTTTTCGAATTTTTCGATGAAATTGGAAAAA
ATTGTATTTCGCGAGTTCAAATTTTTGTGGTTTTGCCAAAAAAAAACGAG
AAAAACGCGAAAATTAATTCCCGCGACAATTAGTTCCAATAAGGTAGCCA
AATTGTAATTCTTTTCTTAAAGGGGAAGTTAAGTAATTTCTAGGGTACCC
ATTTTTTGCTGTTATCATCATTATATGACAATATCATGTGCCTCAGGTTA
CTTTTTATTCGTTCGAAACACTTTTTTCTACGACATATAGCTCCCTCTTT
TTTTGCAATAAAAGTGAGTTTTTAAAGAGAACGCGTTTTTTAAAGAGGAA
TGGCACGAGCATCTGTTCTGACGTAATTTGCTCCAAAAGACGAACAGAAA
TTTTTCTTTTAAATAAAATCTGTACTGATAAACAGTGTTTTGTAAAGAGA
TTCTGCTAGACATGGCTAGACATTTATTCGTTTTTTTCAAGATTTCTTCA
CGTTTCTTCGATCCTATACTTTCTCATTCTTTCTAGCTACAAGATTAGTA
AGTCNAAAATTTTCTTGAATTCTATGATGTTAGGATTGGTTTTCATTGGA
AAAACATATACCTTAAAAATCACTTAACTTCCCCTTTAATTTGTTGAATT
CTTTTCGTATTTTCAGCTTACAATCACTTTAATGATTCTGAAGTAAGTTA
TGTATTTTGATTATAAATTTCTTATTAAATTTCTTGGTAAATATACCAGT
ACTACTAGGGATCGAATTAGCGTATTGCATTTCGCAAATTGCAATGCATT
TTTGGATTACTTTTACAAGTTAAAAATTGAAAATTGATCCATTTTAGGAT
GCAAAATCATACTTACTAAAAAATTGCAATGCACTTTCTATCCCTTATTT
CAATGCCTGACTACCCTGAATTGCCATAACTGCAACAACAGCTGTTTATT
CCTATCTTTTATTATTTTTTTTTTTACAGTATGATTCAGATTTGGATGCC
GAGGACGTTCCTGAAACATGGAGTGAACTCGTTGATAAAAAAGTCCAACG
TAAAATGCATGCTAAAGATATTAAGCGGCAAGATGTAATTTATGGTAAGA
CAACACCATGATTTAGTTTTCGAAAGTAAGCCCTTGTTTTTTTTTGTTAG
AAATATTTCCATTTGGGTTTTTAGCTTCTCTGAACTTACATTTTATTTTA
TATTTTTAGAACTGATACAGACTGAAGCACAATATGTACGGACACTTAAC
GTTATGAAAAAGGTAATTGAAGAACTTTATGTGATTCATATTTTTTAATT
TATTCAACAATCATTTTTTAAGAAAAATTTCTTAGTTAACAACAATACCA
ACAAACAAAACAAATTTAAATAAATCCTTGTTGTTATTTAATTTTAGATC
TACATGAATGCTTTGGTCTCTTTGAATTTTGATGACAGAACTATACATAC
AATTTTTCCAGAATTAGAGGAATTAATAGACCTCAATGGTATGCATAGAA
TATAATATTATTTCCTTATTTTTGTTTTTTTTCTGCTTTTTTGGAAAGAT
GTTTGTACTAGAAATATTGTACCTTACACACTCCTTATTTTTAACCTGTG
ATCTCGAATCTTAATCAAGGCAGTGATTTTCTAACGTCTAGTAGTAATTT
AGATTAAACTAATTATATTCTAATTACTGATTGTGTGATTCATTTAAGTC
TATTCACATAATTATAGGGATATTTTAAAATGTGCTTCTTTCCAATTTAG
GCGGATTCTTAAAAGCAATGAAGCAACGACAAGAGGAAAGCCAAAATTAT
TGTATTGAAAGCATTGGCGATATTCTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038777	XLOC_038777	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_360	supercontig	scaffold_360:242975..247051 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000347278	0.00109712	0	0	18.2542	9.96153	2.5153	2.08914	5.12922	2.60378	1.34768e-09	5.607	2.09305	0.500543	4.36801	4.25054	7.40739	1.66887	1.42452	0	7.37016	7.03646	0.00677238	6.22537	0	0.164991	1.02348	1.58511	1.4192	4.12549

Blast

[Close]

BLAST of TCONS_00061815 vs. Swiss-Prot (Human)
Match: ARHGI (Rho guanine nucleotide exchange factor 18 OS=Homo sapiens GN=ARHGEF18 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.468e-20
Identity = 57/153 (37.25%), Postives = 88/153 (57.52%), Query Frame = 2

Query:  266 LSSSRTSLDSLGMTLEGDDTDY--NAYNHFNDSEYDSDLDAEDVPETWSELVDKKVQRKMHAKDIKRQDVIYELIQTEAQYVRTLNVMKKIYMNALV-SLNFDDRTIHTIFPELEELIDLNGGFLKAMKQRQEES------QNYCIESIGDIL 697
            L   +T+ DSL +T    ++ +  + Y     SE +SD   E   E+WS  VD    +K   + +KRQDV+YEL+QTE  +VRTL +M K+Y  AL   L F  + I  +FP  ++L++ +  FL  +K+R++ES      +NY I+ IGD+L
Sbjct:  195 LKFKQTADDSLSLTSPNTESIFVEDPYTASLRSEIESD-GHEFEAESWSLAVDAAYAKKQKREVVKRQDVLYELMQTEVHHVRTLKIMLKVYSRALQEELQFSSKAIGRLFPCADDLLETHSHFLARLKERRQESLEEGSDRNYVIQKIGDLL 346

The following BLAST results are available for this feature:

BLAST of TCONS_00061815 vs. Swiss-Prot (Human)

BLAST of TCONS_00061815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARHGI	2.468e-20	37.25	Rho guanine nucleotide exchange factor 18 OS=Homo ...	[more]

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TCONS_00061815 (transcript) - C. hemisphaerica