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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061798 ID=TCONS_00061798|Name=TCONS_00061798|organism=Clytia hemisphaerica|type=transcript|length=2098bpRun BLAST on NCBI protein sequence of TCONS_00061798-protein >TCONS_00061798-protein ID=TCONS_00061798-protein|Name=TCONS_00061798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp MSGQGQKRGNQGGGSDGGGKKMRADSITLRFLLQSKHAGGIIGKGGQTIKRun BLAST on NCBI transcript from alignment at scaffold_360:134356..140826- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061798 ID=TCONS_00061798|Name=TCONS_00061798|organism=Clytia hemisphaerica|type=transcript|length=6471bp|location=Sequence derived from alignment at scaffold_360:134356..140826- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_360:134356..140826- >TCONS_00061798 ID=TCONS_00061798|Name=TCONS_00061798|organism=Clytia hemisphaerica|type=CDS|length=14313bp|location=Sequence derived from alignment at scaffold_360:134356..140826- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061798 vs. Swiss-Prot (Human)
Match: HNRPK (Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.569e-32 Identity = 81/188 (43.09%), Postives = 114/188 (60.64%), Query Frame = 2
Query: 725 ITLRFLLQSKHAXXXXXXXXQTIKRLRSEYNATVSVPDTNAPERVLSIAASQESAISVLRECLPLCHEP---PYPITXX--------------XXXXXXXXXLEVNFLVHSSQVGGVIGRAGSNIKELRETTGTSIKVFQECLPNSTERVVAIGAPNEDGIIDVIHRVLAIMQEQPIKGNIALYDPSM 1237
+ LR LLQSK+AG +IGKGG+ IK LR++YNA+VSVPD++ PER+LSI+A E+ +L++ +P E P P + + E+ L+H S GG+IG G+ IKELRE T T+IK+FQEC P+ST+RVV IG D +++ I +L ++ E PIKG YDP+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGG-KPDRVVECIKIILDLISESPIKGRAQPYDPNF 229 HSP 2 Score: 101.293 bits (251), Expect = 1.438e-22 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 2
Query: 1496 NYGK--GNVETTQVTIPNDLAGAIIGKGGERIRNIRQRSGADIKIQDPLPGKADRVITIAGNTEQIQYGQFLMQQSVRQFSGK 1738
+YG G + TTQVTIP DLAG+IIGKGG+RI+ IR SGA IKI +PL G DR+ITI G +QIQ Q+L+Q SV+Q+SGK
Sbjct: 379 SYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGK 461 The following BLAST results are available for this feature:
BLAST of TCONS_00061798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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