|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061785 ID=TCONS_00061785|Name=TCONS_00061785|organism=Clytia hemisphaerica|type=transcript|length=4665bpRun BLAST on NCBI transcript from alignment at scaffold_360:150209..183602+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061785 ID=TCONS_00061785|Name=TCONS_00061785|organism=Clytia hemisphaerica|type=transcript|length=33394bp|location=Sequence derived from alignment at scaffold_360:150209..183602+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061785 vs. Swiss-Prot (Human)
Match: FAN1 (Fanconi-associated nuclease 1 OS=Homo sapiens GN=FAN1 PE=1 SV=4) HSP 1 Score: 339.732 bits (870), Expect = 1.544e-97 Identity = 220/687 (32.02%), Postives = 366/687 (53.28%), Query Frame = 2
Query: 332 EQSPKKDDTNIDEEEEFSI------------RSNNQSYHVEFFNLILQKI-KNQPDVFDVCFNDTEKNTFRAFKELSPDCQELYVRLFQRKHTWIKEEKIKYDNI--NHPSCLKSLTNEGFLQNETSLKKLDEIINLLSLAEARSLIADFKMGKNNLSKSEIKETLQKNCKKQKTL-FG----SMEDIVIKKAKKMLGKCVLIEQSHSAIFSRMLTLFQMFISL----FASDNNNILYHLLQVKIKQIIYTKYEVCNNSYLKSIFQSRESFTYYAEAVNLSDEFNILVESNLFEDAFVLYTKA---FKKLKD-SNIHCREDLPGHLKRYTAYYIFLRICRSSVTVLEKLKKYKEAVELVDFVLASPLIHAKHRGELWERKIIDCERHLKNLELAHLSIEEAIKDPMVRGHWQYVFKQRLSRMEXXXXXXXGTDDNMFE------LENYKKVPIELLKATALLDTSSAHRAVFMSPSSSGGN---IMSNVENLVLETYKAKGF-VGLHHEGSTLMTLYVLLFWDIIFMN-VDGVFLSEYQNAPLDMFTDDFYVKRKDDLDERLHFVYTATKQEIAEKLTKSWNENYQSNVACCNWSIFPSVQKAIDLTVCLKPKVLGGICEVYAKDLRSRMSGFPDLILWNLQTKSCKIIEVKGPGDKLSSKQIVWLDILQFLGADVSVCHVTGIGSK 2275
+++P +DD+ ++ + SI ++ Y++ F ++L+ + +N+ D+ F++ EK F +LS Q+LYVRLFQRK +WIK K++Y+ I + ++ LTN GFLQ E+ L++L E++ LLS E +SL F + N K ++ + K K++ +G + +++K+AK + G+ V I + A+FSR+L LF + S+ A L +L V + ++ + Y + ++ IFQ R+ YA A ++ + + + + +E+A L A + +LK+ ++ C EDLP L+ +T +I+ RI V +L++L Y+EAV ++ +L+ + RG W+R ++ +HLK LE I E + DP VR + QR R+ + KK ++F+ +++ K V I L ++VF+ + + ++ +VE L L Y+ GF G+H EGST TLY LL WDIIFM+ + VF + Q PLD+ TD F+ R+ L+ RL ++ A ++ + + +W+E + +W F S+Q+A DL CL VL G+C A D R G PDL++WN Q++ K++EVKGP D+LS KQ++WL LQ LGA+V VCHV +G+K
Sbjct: 337 QEAPLQDDSCLNNDIPHSIPLEQGSSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDML--LFDEQEKGIVTKFYQLSATGQKLYVRLFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKSLAKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRAKALAGQSVRICKGPRAVFSRILLLFSLTDSMEDEDAACGGQGQLSTVLLVNLGRMEFPSYTINRKTH---IFQDRDDLIRYAAATHMLSDISSAMANGNWEEAKELAQCAKRDWNRLKNHPSLRCHEDLPLFLRCFTVGWIYTRILSRFVEILQRLHMYEEAVRELESLLSQRIYCPDSRGRWWDRLALNLHQHLKRLEPTIKCITEGLADPEVRTGHRLSLYQRAVRLRESPSCKKFK--HLFQQLPEMAVQDVKHVTI----TGRLCPQRGMCKSVFVMEAGEAADPTTVLCSVEELALAHYRRSGFDQGIHGEGSTFSTLYGLLLWDIIFMDGIPDVFRNACQAFPLDLCTDSFFTSRRPALEARLQLIHDAPEESLRAWVAATWHEQEGRVASLVSWDRFTSLQQAQDLVSCLGGPVLSGVCRHLAADFRHCRGGLPDLVVWNSQSRHFKLVEVKGPNDRLSHKQMIWLAELQKLGAEVEVCHVVAVGAK 1012 The following BLAST results are available for this feature:
BLAST of TCONS_00061785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.