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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061775 ID=TCONS_00061775|Name=TCONS_00061775|organism=Clytia hemisphaerica|type=transcript|length=952bp
TGCCCACAATCATGCGCTTCACGGTCTTGACACCAATTTCAGCACGGCTG
TTGCTGTGAGGGAAGGCTGTTGACGATATACGTTGTCTGACTCCCCACGA
TTTAAGGAAGGATTCTGTAGATCTTGAGGTGAATTCCGGGCCGCCATCAG
ATGCAAGCTCCTCAGGGATACCGTAGGTAACAAACGAGCGATGTAGGCTA
TCAATCAAACCGCTGCTTCCATCTCTTGCACGGTCTACGATGGGCCAGTT
TGAGTAGCGATCAACGGATACAAGATAGTATTTCCCCATGTAGTAGAAGA
AGTCGGAGCAAAGGTACTGAAATGGGTATTCCGGTGTTGGTGGGGTAGTT
GGGGGCATGCTTGGCTGAGAGGGTGCCATTACATCGCATTGGTGACATCT
AGAACGTCGTTGTTTGATGGATTTTGTGATACCCGGCCAAAATACTGCAG
ATTCTGCGTGAGCGATCATCGAGTTGGTACCTTGATGGGCCGAGTGGAGG
TTGTCGAGGATGACATTCCGAAGACTTGGTGGGATGACGATTCTGTCTTT
GTAGATAACGACACCATCCAGTGTGGATAGGTCGGATCGGTATTGGTGAT
ATGGGCGAAGCGCTTCTGGCAGTTCTTCCAACGATTGGATGAACCCGGAT
TCAATGAGTTCTGTGAGCTGGATCATGCTTTTGTCGCTTGAGGTGGTTTC
TTTGATCATATCCCACGTTACTGAGTTGCATGTGGTGGTGATAGCAGCAA
TGGATTGGATTAGGAGGCCTTCTTCGTCTGCGAGTGTTGAGGTTGGCCGG
CTGATGTTATTCGACGGTAAGACTTGATGGACTTTCGGTGGTAGTAGCTC
AGTGGATGATATAGAAAAGATGTCATCAGGTAGGTGCATCTTGGCAGGTG
ATTTGGATCCGCTTGGATGTCTGGACATGGTGTCGGAGCCGCAGTTCTTT
CT Run BLAST on NCBI protein sequence of TCONS_00061775-protein >TCONS_00061775-protein ID=TCONS_00061775-protein|Name=TCONS_00061775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
RKNCGSDTMSRHPSGSKSPAKMHLPDDIFSISSTELLPPKVHQVLPSNNI
SRPTSTLADEEGLLIQSIAAITTTCNSVTWDMIKETTSSDKSMIQLTELI
ESGFIQSLEELPEALRPYHQYRSDLSTLDGVVIYKDRIVIPPSLRNVILD
NLHSAHQGTNSMIAHAESAVFWPGITKSIKQRRSRCHQCDVMAPSQPSMP
PTTPPTPEYPFQYLCSDFFYYMGKYYLVSVDRYSNWPIVDRARDGSSGLI
DSLHRSFVTYGIPEELASDGGPEFTSRSTESFLKSWGVRQRISSTAFPHS
NSRAEIGVKTVKRMIVG Run BLAST on NCBI transcript from alignment at scaffold_36:1526010..1526961 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061775 ID=TCONS_00061775|Name=TCONS_00061775|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at scaffold_36:1526010..1526961 (Clytia hemisphaerica)
AGAAAGAACTGCGGCTCCGACACCATGTCCAGACATCCAAGCGGATCCAA
ATCACCTGCCAAGATGCACCTACCTGATGACATCTTTTCTATATCATCCA
CTGAGCTACTACCACCGAAAGTCCATCAAGTCTTACCGTCGAATAACATC
AGCCGGCCAACCTCAACACTCGCAGACGAAGAAGGCCTCCTAATCCAATC
CATTGCTGCTATCACCACCACATGCAACTCAGTAACGTGGGATATGATCA
AAGAAACCACCTCAAGCGACAAAAGCATGATCCAGCTCACAGAACTCATT
GAATCCGGGTTCATCCAATCGTTGGAAGAACTGCCAGAAGCGCTTCGCCC
ATATCACCAATACCGATCCGACCTATCCACACTGGATGGTGTCGTTATCT
ACAAAGACAGAATCGTCATCCCACCAAGTCTTCGGAATGTCATCCTCGAC
AACCTCCACTCGGCCCATCAAGGTACCAACTCGATGATCGCTCACGCAGA
ATCTGCAGTATTTTGGCCGGGTATCACAAAATCCATCAAACAACGACGTT
CTAGATGTCACCAATGCGATGTAATGGCACCCTCTCAGCCAAGCATGCCC
CCAACTACCCCACCAACACCGGAATACCCATTTCAGTACCTTTGCTCCGA
CTTCTTCTACTACATGGGGAAATACTATCTTGTATCCGTTGATCGCTACT
CAAACTGGCCCATCGTAGACCGTGCAAGAGATGGAAGCAGCGGTTTGATT
GATAGCCTACATCGCTCGTTTGTTACCTACGGTATCCCTGAGGAGCTTGC
ATCTGATGGCGGCCCGGAATTCACCTCAAGATCTACAGAATCCTTCCTTA
AATCGTGGGGAGTCAGACAACGTATATCGTCAACAGCCTTCCCTCACAGC
AACAGCCGTGCTGAAATTGGTGTCAAGACCGTGAAGCGCATGATTGTGGG
CA Coding sequence (CDS) from alignment at scaffold_36:1526010..1526961 >TCONS_00061775 ID=TCONS_00061775|Name=TCONS_00061775|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_36:1526010..1526961 (Clytia hemisphaerica)
AGAAAGAACTGCGGCTCCGACACCATGTCCAGACATCCAAGCGGATCCAA
ATCACCTGCCAAGATGCACCTACCTGATGACATCTTTTCTATATCATCCA
CTGAGCTACTACCACCGAAAGTCCATCAAGTCTTACCGTCGAATAACATC
AGCCGGCCAACCTCAACACTCGCAGACGAAGAAGGCCTCCTAATCCAATC
CATTGCTGCTATCACCACCACATGCAACTCAGTAACGTGGGATATGATCA
AAGAAACCACCTCAAGCGACAAAAGCATGATCCAGCTCACAGAACTCATT
GAATCCGGGTTCATCCAATCGTTGGAAGAACTGCCAGAAGCGCTTCGCCC
ATATCACCAATACCGATCCGACCTATCCACACTGGATGGTGTCGTTATCT
ACAAAGACAGAATCGTCATCCCACCAAGTCTTCGGAATGTCATCCTCGAC
AACCTCCACTCGGCCCATCAAGGTACCAACTCGATGATCGCTCACGCAGA
ATCTGCAGTATTTTGGCCGGGTATCACAAAATCCATCAAACAACGACGTT
CTAGATGTCACCAATGCGATGTAATGGCACCCTCTCAGCCAAGCATGCCC
CCAACTACCCCACCAACACCGGAATACCCATTTCAGTACCTTTGCTCCGA
CTTCTTCTACTACATGGGGAAATACTATCTTGTATCCGTTGATCGCTACT
CAAACTGGCCCATCGTAGACCGTGCAAGAGATGGAAGCAGCGGTTTGATT
GATAGCCTACATCGCTCGTTTGTTACCTACGGTATCCCTGAGGAGCTTGC
ATCTGATGGCGGCCCGGAATTCACCTCAAGATCTACAGAATCCTTCCTTA
AATCGTGGGGAGTCAGACAACGTATATCGTCAACAGCCTTCCCTCACAGC
AACAGCCGTGCTGAAATTGGTGTCAAGACCGTGAAGCGCATGATTGTGGG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061775-exon-scaffold_36-1491911889:1526010..1526961 | TCONS_00061775-exon-scaffold_36-1491911889:1526010..1526961 | Clytia hemisphaerica | exon |
| TCONS_00061775-exon-scaffold_36-1510915933:1526010..1526961 | TCONS_00061775-exon-scaffold_36-1510915933:1526010..1526961 | Clytia hemisphaerica | exon |
| TCONS_00061775-exon-scaffold_36-1575043694:1526010..1526961 | TCONS_00061775-exon-scaffold_36-1575043694:1526010..1526961 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1526010..1526961 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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