TCONS_00061756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061756
Unique NameTCONS_00061756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061756 ID=TCONS_00061756|Name=TCONS_00061756|organism=Clytia hemisphaerica|type=transcript|length=515bp
CTgatatgtgcggacggtaagggtcgtttttttttcaaagtctctctaag
ggttgcaaaaatcagaaagcTTTAAATTAGTCTCACAGGGTCAGCATTTT
TCCCAAACTCGAGTCGAAGaagaggcccccagcggacccaaaattcacgc
catcacgccacttTTTCCGCCTGCAAAATTGACTCTTACGGGAGTGATAG
GTAAAAATTTCGCACTCCTAGACATAAGAACCAAATCACTGATGATTTCA
Ccatcaatgaaagaagaaaaatcaaagagatgtgcgaaaaagctaaaaaa
tggaaCTCCGAATGTGATGGTGATTTCATTTGGCGTGTGAGAGGAAGTCC
CAGAACAGATAACCTTCACTTGATAAAAACAAACAAAAACTTTGCCAACC
AAAAGCTGTCAATATCTAGCCTCAGTAGCAGCGACGATGAGCTGCCAACA
AAAAATTagtcttttttaattgtaaagtagcgttgacttttattagcctt
tgttgctaccttttc
Run BLAST on NCBI

transcript from alignment at scaffold_36:1218585..1219099

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061756 ID=TCONS_00061756|Name=TCONS_00061756|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_36:1218585..1219099 (Clytia hemisphaerica)
gaaaaggtagcaacaaaggctaataaaagtcaacgctactttacaattaa
aaaagactAATTTTTTGTTGGCAGCTCATCGTCGCTGCTACTGAGGCTAG
ATATTGACAGCTTTTGGTTGGCAAAGTTTTTGTTTGTTTTTATCAAGTGA
AGGTTATCTGTTCTGGGACTTCCTCTCACACGCCAAATGAAATCACCATC
ACATTCGGAGttccattttttagctttttcgcacatctctttgatttttc
ttctttcattgatgGTGAAATCATCAGTGATTTGGTTCTTATGTCTAGGA
GTGCGAAATTTTTACCTATCACTCCCGTAAGAGTCAATTTTGCAGGCGGA
AAaagtggcgtgatggcgtgaattttgggtccgctgggggcctcttCTTC
GACTCGAGTTTGGGAAAAATGCTGACCCTGTGAGACTAATTTAAAgcttt
ctgatttttgcaacccttagagagactttgaaaaaaaaacgacccttacc
gtccgcacatatcAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038746XLOC_038746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061756-exon-scaffold_36-1491911889:1218585..1219099TCONS_00061756-exon-scaffold_36-1491911889:1218585..1219099Clytia hemisphaericaexon
TCONS_00061756-exon-scaffold_36-1510915933:1218585..1219099TCONS_00061756-exon-scaffold_36-1510915933:1218585..1219099Clytia hemisphaericaexon
TCONS_00061756-exon-scaffold_36-1575043694:1218585..1219099TCONS_00061756-exon-scaffold_36-1575043694:1218585..1219099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1218585..1219099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40816	5.03744	7.62133	7.04491	3.1169	3.04358	2.6884	4.0986	3.19281	3.51588	5.08556	3.68301	2.74079	2.121	2.10137	2.28883	2.70205	1.91033	5.45871	4.20029	4.24391	2.63272	1.37782	2.05623	5.68873	4.88473	4.16693	2.53799	2.81018	3.55316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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