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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061724 ID=TCONS_00061724|Name=TCONS_00061724|organism=Clytia hemisphaerica|type=transcript|length=1269bp
gttttgccttggctcagtactttgtctgccatttactttcggttttttta
actagattacccaggtgtttctcttttttttccctgaatgtcttttattt
ggaattgaataatcgagacatgaaaaatgactatattgcaatctgttttc
aatgaataatctaaaatgtactgcagatgacatgtaggcgttaataatgt
gcgcgcgctctttcgcgagcgtgatgcgtgatggaaggcggttgtttcag
tgtggtttagatccacactgtgacctagtataaGTTTCTTTATTCATCTT
TCATTCGTCACAGTGGCCCATAACAGAGACAATGACTAAGTTGTCTAAAA
GCTTAGGCGTTATTCCATTGCTAGCCACTTTTTATTAATATTAGATactg
ttattattattatctttGTTATTATCAGTAATTATTTTTCTCCCATGTAT
GGTATTTGTTATTGATTCTATCAAGCGtgttgataatttttctttcacag
AACGACAGCTAGATGAACTGATCTTGCAAGTGGACGAAGAATCGAGCAAC
AAGGATATTTGTAAACCGCTAAAGTACAGTCAGTCAAACTATATGCTGAT
CCTTTACATCAACAGAAACGAGATACAAAGGGATTCGTGGAATGCAACGA
TGTACAATACCAAGAAGTCGACGTATGCGCACTTATTTCCAAGAATCCTG
ACCTTACCAAACCAAAAGGTAAAAGATATAATTCGAAATATGGTGCGTCA
GTATGAAAAGGACAATTACGAAGTTTTATCGCAAATTGACGATGCACCAA
ACCAACACGATTTGTGTAAATCAAGAAAGTATAAGAGATCACTTCTTCGC
ACTGACGATCTCTTTATTCCCGTTATCTTTTCAATCTCTCGCGGTGATTT
GTGTGTTCCAGGTGATTCTTCCTGCGAGCAAATCAGTTGCTCAACAATTT
CTTCGTTTTCTGCAGTTGTTACAGTTATTGGGAGGCCGGAGCCGGGTTTT
CTGTCCATGGTCCCGCTTTTTTTGAATCGATTAATGAGATTTTGCACAGA
ACCTTTATACCACTTCTTCATGGAATGCTCTTTACAAATCCTGTACGCTG
ACCAGCCTTTTTCGATATAATCATTCTTTATGACAGCTTTATCTTCGTTG
GAAAAAAACCATCTTTACGCAAGTAAAACTGCTTTTGACTGAAGGTCAAA
GTTTCAGAAAGAAAAACGCCGGTTTACTTTTTTCGAGCGCAATGGAACGA
CATCTATTGAAAAGAAGAC Run BLAST on NCBI protein sequence of TCONS_00061724-protein >TCONS_00061724-protein ID=TCONS_00061724-protein|Name=TCONS_00061724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MVFVIDSIKRVDNFSFTERQLDELILQVDEESSNKDICKPLKYSQSNYML
ILYINRNEIQRDSWNATMYNTKKSTYAHLFPRILTLPNQKVKDIIRNMVR
QYEKDNYEVLSQIDDAPNQHDLCKSRKYKRSLLRTDDLFIPVIFSISRGD
LCVPGDSSCEQISCSTISSFSAVVTVIGRPEPGFLSMVPLFLNRLMRFCT
EPLYHFFMECSLQILYADQPFSI Run BLAST on NCBI transcript from alignment at scaffold_36:534359..535627 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061724 ID=TCONS_00061724|Name=TCONS_00061724|organism=Clytia hemisphaerica|type=transcript|length=1269bp|location=Sequence derived from alignment at scaffold_36:534359..535627 (Clytia hemisphaerica)
GTCTTCTTTTCAATAGATGTCGTTCCATTGCGCTCGAAAAAAGTAAACCG
GCGTTTTTCTTTCTGAAACTTTGACCTTCAGTCAAAAGCAGTTTTACTTG
CGTAAAGATGGTTTTTTTCCAACGAAGATAAAGCTGTCATAAAGAATGAT
TATATCGAAAAAGGCTGGTCAGCGTACAGGATTTGTAAAGAGCATTCCAT
GAAGAAGTGGTATAAAGGTTCTGTGCAAAATCTCATTAATCGATTCAAAA
AAAGCGGGACCATGGACAGAAAACCCGGCTCCGGCCTCCCAATAACTGTA
ACAACTGCAGAAAACGAAGAAATTGTTGAGCAACTGATTTGCTCGCAGGA
AGAATCACCTGGAACACACAAATCACCGCGAGAGATTGAAAAGATAACGG
GAATAAAGAGATCGTCAGTGCGAAGAAGTGATCTCTTATACTTTCTTGAT
TTACACAAATCGTGTTGGTTTGGTGCATCGTCAATTTGCGATAAAACTTC
GTAATTGTCCTTTTCATACTGACGCACCATATTTCGAATTATATCTTTTA
CCTTTTGGTTTGGTAAGGTCAGGATTCTTGGAAATAAGTGCGCATACGTC
GACTTCTTGGTATTGTACATCGTTGCATTCCACGAATCCCTTTGTATCTC
GTTTCTGTTGATGTAAAGGATCAGCATATAGTTTGACTGACTGTACTTTA
GCGGTTTACAAATATCCTTGTTGCTCGATTCTTCGTCCACTTGCAAGATC
AGTTCATCTAGCTGTCGTTctgtgaaagaaaaattatcaacaCGCTTGAT
AGAATCAATAACAAATACCATACATGGGAGAAAAATAATTACTGATAATA
ACaaagataataataataacagtATCTAATATTAATAAAAAGTGGCTAGC
AATGGAATAACGCCTAAGCTTTTAGACAACTTAGTCATTGTCTCTGTTAT
GGGCCACTGTGACGAATGAAAGATGAATAAAGAAACttatactaggtcac
agtgtggatctaaaccacactgaaacaaccgccttccatcacgcatcacg
ctcgcgaaagagcgcgcgcacattattaacgcctacatgtcatctgcagt
acattttagattattcattgaaaacagattgcaatatagtcatttttcat
gtctcgattattcaattccaaataaaagacattcagggaaaaaaaagaga
aacacctgggtaatctagttaaaaaaaccgaaagtaaatggcagacaaag
tactgagccaaggcaaaac Coding sequence (CDS) from alignment at scaffold_36:534359..535627 >TCONS_00061724 ID=TCONS_00061724|Name=TCONS_00061724|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_36:534359..535627 (Clytia hemisphaerica)
TTATATCGAAAAAGGCTGGTCAGCGTACAGGATTTGTAAAGAGCATTCCA
TGAAGAAGTGGTATAAAGGTTCTGTGCAAAATCTCATTAATCGATTCAAA
AAAAGCGGGACCATGGACAGAAAACCCGGCTCCGGCCTCCCAATAACTGT
AACAACTGCAGAAAACGAAGAAATTGTTGAGCAACTGATTTGCTCGCAGG
AAGAATCACCTGGAACACACAAATCACCGCGAGAGATTGAAAAGATAACG
GGAATAAAGAGATCGTCAGTGCGAAGAAGTGATCTCTTATACTTTCTTGA
TTTACACAAATCGTGTTGGTTTGGTGCATCGTCAATTTGCGATAAAACTT
CGTAATTGTCCTTTTCATACTGACGCACCATATTTCGAATTATATCTTTT
ACCTTTTGGTTTGGTAAGGTCAGGATTCTTGGAAATAAGTGCGCATACGT
CGACTTCTTGGTATTGTACATCGTTGCATTCCACGAATCCCTTTGTATCT
CGTTTCTGTTGATGTAAAGGATCAGCATATAGTTTGACTGACTGTACTTT
AGCGGTTTACAAATATCCTTGTTGCTCGATTCTTCGTCCACTTGCAAGAT
CAGTTCATCTAGCTGTCGTTctgtgaaagaaaaattatcaacaCGCTTGA
TAGAATCAATAACAAATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061724-exon-scaffold_36-1491911889:534359..535627 | TCONS_00061724-exon-scaffold_36-1491911889:534359..535627 | Clytia hemisphaerica | exon |
| TCONS_00061724-exon-scaffold_36-1510915933:534359..535627 | TCONS_00061724-exon-scaffold_36-1510915933:534359..535627 | Clytia hemisphaerica | exon |
| TCONS_00061724-exon-scaffold_36-1575043694:534359..535627 | TCONS_00061724-exon-scaffold_36-1575043694:534359..535627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:534359..535627 . |
Blast
The following BLAST results are available for this feature:
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