TCONS_00061714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061714
Unique NameTCONS_00061714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061714 ID=TCONS_00061714|Name=TCONS_00061714|organism=Clytia hemisphaerica|type=transcript|length=726bp
ggtgttttgagggtgtaaaaagtgaaaattttcttCACTGTCCAAATTGC
TCGTAGAGCCCATGCGAAACGGGTAGAAAATGTAATCTGATATCTGATTG
CATTCACCTTTATATTTTAGAAAACTGGGGATCAAACAGTTAAGAATGAT
CCTTACATTTACGATGAACCAAATCCTGCTGAATGTCAAGCTATCAAAAG
CTCACTTTGGGAATTGGGAACATTGTCTTCTCATTTTTCATCAGATGTCA
AAACAATGGTTGCTTCTTTCAAAAAGGATTTTCCAGACACTGAGAATGAT
ATGACTGAACATTTCGATTGTTCTTATGAGGacttatttaaaatgaaaat
tgataaattatctGGATCAATTGAGGAGGCACCAACCAACTTCACAAAAG
CtaaagaattgtttgatacaGACTCTGAGATGTGGGCCATTGAGTAAAGC
ATTTAtaaatcatcaatttttttgaaatattatagtcttttataaatttc
aagtagtattttttgagttttcaaatagcGTTTTTATGGCTGTggaaaac
acaaacaaaaaaatctacTCCGAAATAGATTGGAAATCATTCAAGAATAA
AGTTAGTCTTGAACCTTAGCTTTCCACTTTCTGTTGgagaattttacttt
tttttcaaaagctctTTTTGTTCTGTGGGTATCTGCTTAGGGACTTATGA
ATTGAAATAATGAATTATCATTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_36:267734..268459

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061714 ID=TCONS_00061714|Name=TCONS_00061714|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at scaffold_36:267734..268459 (Clytia hemisphaerica)
GTAGAATGATAATTCATTATTTCAATTCATAAGTCCCTAAGCAGATACCC
ACAGAACAAAAagagcttttgaaaaaaaagtaaaattctcCAACAGAAAG
TGGAAAGCTAAGGTTCAAGACTAACTTTATTCTTGAATGATTTCCAATCT
ATTTCGGAgtagatttttttgtttgtgttttccACAGCCATAAAAACgct
atttgaaaactcaaaaaatactacttgaaatttataaaagactataatat
ttcaaaaaaattgatgatttaTAAATGCTTTACTCAATGGCCCACATCTC
AGAGTCtgtatcaaacaattctttaGCTTTTGTGAAGTTGGTTGGTGCCT
CCTCAATTGATCCagataatttatcaattttcattttaaataagtCCTCA
TAAGAACAATCGAAATGTTCAGTCATATCATTCTCAGTGTCTGGAAAATC
CTTTTTGAAAGAAGCAACCATTGTTTTGACATCTGATGAAAAATGAGAAG
ACAATGTTCCCAATTCCCAAAGTGAGCTTTTGATAGCTTGACATTCAGCA
GGATTTGGTTCATCGTAAATGTAAGGATCATTCTTAACTGTTTGATCCCC
AGTTTTCTAAAATATAAAGGTGAATGCAATCAGATATCAGATTACATTTT
CTACCCGTTTCGCATGGGCTCTACGAGCAATTTGGACAGTGaagaaaatt
ttcactttttacaccctcaaaacacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038704XLOC_038704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061714-exon-scaffold_36-1491911889:267734..268459TCONS_00061714-exon-scaffold_36-1491911889:267734..268459Clytia hemisphaericaexon
TCONS_00061714-exon-scaffold_36-1510915933:267734..268459TCONS_00061714-exon-scaffold_36-1510915933:267734..268459Clytia hemisphaericaexon
TCONS_00061714-exon-scaffold_36-1575043694:267734..268459TCONS_00061714-exon-scaffold_36-1575043694:267734..268459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:267734..268459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.0964	18.9377	4.66186	3.95278	38.1269	25.9601	16.5863	20.1532	10.5823	9.3116	7.99522	6.26119	8.30622	8.10473	9.27391	9.45053	8.34535	7.86731	1.2401	2.59535	11.8763	8.93197	32.1019	25.4656	8.84121	12.9537	5.64569	4.61934	14.3191	16.1409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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