TCONS_00061710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061710
Unique NameTCONS_00061710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061710 ID=TCONS_00061710|Name=TCONS_00061710|organism=Clytia hemisphaerica|type=transcript|length=503bp
GTATTTATTACAGGGTattttccaagcacttttcctTACCACCGTTTTGG
TCTGAATAATTGAGTTTCAATGCAGTGGTGTATTAAATGCGGTCCACCAT
GGTTGGGTGACGAAGAGGATTCTTGCCCTCTAAACGTCCTAAATAAGTGT
TTTCATGCATCCTACCTAACCTAAGACTTTCACCATCAGCTGGGCAAAGT
AAGAggtatttcttgatcaacaggcgtcttttgaaaattacatgTTCTAA
AAAGTGTTTGCGGTGAAGCCACCGTgaatgaaattgaatatttgCAGCCC
AGCGACGTGAAAGCTCGACTTCCATGAAAAATACTTAATTTCTTCAGCCT
TCCGACCAAAATGAATAAACATCTGATCAACCAAGCTttgtttttaattc
attttgatCCAGGGGTGTAAATATTGCATAATAGTTGAAGAACTTTGATC
GGATATTTTTGTACTTCTTAGTTTTTATTGTACAGCTCTAAAATACTGTa
cag
Run BLAST on NCBI

transcript from alignment at scaffold_36:235525..236027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061710 ID=TCONS_00061710|Name=TCONS_00061710|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_36:235525..236027 (Clytia hemisphaerica)
ctgtACAGTATTTTAGAGCTGTACAATAAAAACTAAGAAGTACAAAAATA
TCCGATCAAAGTTCTTCAACTATTATGCAATATTTACACCCCTGGatcaa
aatgaattaaaaacaaAGCTTGGTTGATCAGATGTTTATTCATTTTGGTC
GGAAGGCTGAAGAAATTAAGTATTTTTCATGGAAGTCGAGCTTTCACGTC
GCTGGGCTGcaaatattcaatttcattcACGGTGGCTTCACCGCAAACAC
TTTTTAGAAcatgtaattttcaaaagacgcctgttgatcaagaaataccT
CTTACTTTGCCCAGCTGATGGTGAAAGTCTTAGGTTAGGTAGGATGCATG
AAAACACTTATTTAGGACGTTTAGAGGGCAAGAATCCTCTTCGTCACCCA
ACCATGGTGGACCGCATTTAATACACCACTGCATTGAAACTCAATTATTC
AGACCAAAACGGTGGTAaggaaaagtgcttggaaaatACCCTGTAATAAA
TAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038700XLOC_038700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061710-exon-scaffold_36-1491911889:235525..236027TCONS_00061710-exon-scaffold_36-1491911889:235525..236027Clytia hemisphaericaexon
TCONS_00061710-exon-scaffold_36-1510915933:235525..236027TCONS_00061710-exon-scaffold_36-1510915933:235525..236027Clytia hemisphaericaexon
TCONS_00061710-exon-scaffold_36-1575043694:235525..236027TCONS_00061710-exon-scaffold_36-1575043694:235525..236027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:235525..236027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.36632	1.33673	0.325467	1.28594	0.930862	0.580974	0.203377	0	0.244515	0.482204	0	0	0.274088	0.0735345	0	0.371401	0.128278	0.268467	0.350019	0.170727	0.138361	0.12579	0	0	0	0.17659	0.267874	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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