TCONS_00061686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061686
Unique NameTCONS_00061686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061686 ID=TCONS_00061686|Name=TCONS_00061686|organism=Clytia hemisphaerica|type=transcript|length=860bp
CAACaataaatgacaaaagaaaatcaaaacactaTTAACTTTTGAAAGAC
CAGACTCTTTAATTGGTTTAGAGAGAGAAACACAATGCTTACTCAGCATG
GTTAGAGGTTTCATTCCTTAATCTTGACTCATCAAAGGACGATACTGACG
AATTTTGACTTCCAGGGGATTCTGGATCAGCTGGTGAAAATAGCTTTGGC
GAAGCCGAATCTGCAGCGGAATTGGGTGAACTCTGTGGACTATCCTCTAT
GCATTCCATCCCTGATCTAAGCGTCCTATTAGTGGATCTTCGAGATTTGG
ATGGGATGATGTCAGAATCTTCATCATCTATTACTGGAGGTTGTTTTCTA
GGTGATTTCCTTGGAGATTGACGTGTTTTTGTTGACTTGTGAGGCAGAGA
CTCAACATCTGATTCTGAAAGACTCTCAGTCTCATCACCTGAGATTTGTG
GGTTTTTTTCGTTTTCTCCACTGTGTTTTTTGTTACTCTCGATTTCTGAG
TCTACAGTTTCACCATCACTCGATTCGTTTTCTGTGGATGATTCAATAAC
AATCGCACGTTCCCGGAAACTATATTTTGATTGTTGCGGAGGTTTCGTGT
TGGCTGTTGTTCTTTTGTTGTTAAGTCTCCCACTCTGTGTATTCAgttgc
ttttttgttttcatttttcccctttgaatttctattttattaAGTAAATC
ATTTGGAAAGATTTCTTCTTCAGAGAACCTTATtagtaataatgataata
acaaataatatacacgctttttcttttataagaatagtgtactttggttg
agggtgagcattattcttatttttctattgttctaaacaataggcctatt
gttttaaacc
Run BLAST on NCBI

transcript from alignment at scaffold_36:1195583..1196577-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061686 ID=TCONS_00061686|Name=TCONS_00061686|organism=Clytia hemisphaerica|type=transcript|length=995bp|location=Sequence derived from alignment at scaffold_36:1195583..1196577- (Clytia hemisphaerica)
CAACAATAAATGACAAAAGAAAATCAAAACACTATTAACTTTTGAAAGAC CAGACTCTTTAATTGGTTTAGAGAGAGAAACACAATGCTTACTCAGCATG GTTAGAGGTTTCATTCCTTAATCTTGACTCATCAAAGGACGATACTGACG AATTTTGACTTCCAGGGGATTCTGGATCAGCTGGTGAAAATAGCTTTGGC GAAGCCGAATCTGCAGCGGAATTGGGTGAACTCTGTGGACTATCCTCTAT GCATTCCATCCCTGATCTAAGCGTCCTATTAGTGGATCTTCGAGATTTGG ATGGGATGATGTCAGAATCTTCATCATCTATTACTGGAGGTTGTTTTCTA GGTGATTTCCTCAGAGATTGACGTTTTTTTGTGTTTTTTTGAGGCGGAGA ATCGACTTCTGATTCTGAAGGACTCTCAGTCTCATCACCTGAAGTTTGTG GGTTGTCGTCATCTATTACTGGAGGTTGTTTTCTAGGTGATTTCCTTGGA GATTGACGTGTTTTTGTTGACTTGTGAGGCAGAGACTCAACATCTGATTC TGAAAGACTCTCAGTCTCATCACCTGAGATTTGTGGGTTTTTTTCGTTTT CTCCACTGTGTTTTTTGTTACTCTCGATTTCTGAGTCTACAGTTTCACCA TCACTCGATTCGTTTTCTGTGGATGATTCAATAACAATCGCACGTTCCCG GAAACTATATTTTGATTGTTGCGGAGGTTTCGTGTTGGCTGTTGTTCTTT TGTTGTTAAGTCTCCCACTCTGTGTATTCAGTTGCTTTTTTGTTTTCATT TTTCCCCTTTGAATTTCTATTTTATTAAGTAAATCATTTGGAAAGATTTC TTCTTCAGAGAACCTTATTAGTAATAATGATAATAACAAATAATATACAC GCTTTTTCTTTTATAAGAATAGTGTACTTTGGTTGAGGGTGAGCATTATT CTTATTTTTCTATTGTTCTAAACAATAGGCCTATTGTTTTAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038681XLOC_038681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061686-exon-scaffold_36-1575043694:1196239..1196577TCONS_00061686-exon-scaffold_36-1575043694:1196239..1196577Clytia hemisphaericaexon
TCONS_00061686-exon-scaffold_36-1575043694:1195583..1196103TCONS_00061686-exon-scaffold_36-1575043694:1195583..1196103Clytia hemisphaericaexon
TCONS_00061686-exon-scaffold_36-1510915933:1196239..1196577TCONS_00061686-exon-scaffold_36-1510915933:1196239..1196577Clytia hemisphaericaexon
TCONS_00061686-exon-scaffold_36-1510915933:1195583..1196103TCONS_00061686-exon-scaffold_36-1510915933:1195583..1196103Clytia hemisphaericaexon
TCONS_00061686-exon-scaffold_36-1491911889:1196239..1196577TCONS_00061686-exon-scaffold_36-1491911889:1196239..1196577Clytia hemisphaericaexon
TCONS_00061686-exon-scaffold_36-1491911889:1195583..1196103TCONS_00061686-exon-scaffold_36-1491911889:1195583..1196103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1195583..1196577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0526311 0 0.153381 0.36443 0 0 0.087411 0 0.123698 0.565802 0 0 0 0 0 0 0.160507 0 0.0801365 0 0 0 0 0 0.101867 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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