TCONS_00061674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061674
Unique NameTCONS_00061674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061674 ID=TCONS_00061674|Name=TCONS_00061674|organism=Clytia hemisphaerica|type=transcript|length=1104bp
ATAAATTTTGTAACAGAATGATTAATTTCCCTGGTCCTCACAACAATTTG
GTGTATAAAAGGGGGAAGTTTTGAGGGATGGACATCATCTCACAGCTCAT
TACAGCTTGTGAAGAAGAACAAAACACAAACAGAAAAAAGAAGATCAATT
CACAAGCATCATGTTGGTAATCTATATTCTAGCCGTTGCTTTGGTGACAA
TCCAAGTGCAAGCCAGTGCTAATAATCCTTTCACCTACGAAGACAATTTG
AAAGCTGtcGATGCATACTTTTGTAGGGGAAAATCTGGCAATTATCGCCA
TCCAAATGGAGCCTGCGATTACTACATAGCCTGCGGTGTTGGATGTAAAA
ATGCTAGAAGCAGACGATCATACAGACACCTTTGTACACAAAACATCATG
CCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATATGG
AGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTCCAAGGAGAAG
TTTGCTATGGATCCACTCAAGAGTCATATGGCACTTACACTCATCAATGT
ACTGGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGG
ATGTTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTCCACACGCCC
CACCAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTtcaaatac
gtcaaaaaatcaTACTACGACATTAAACATGACGTCAAATTTCCCGAACC
ATTCACTGCTTACGACGCCAATAAATACGGATTCTATTATTTGAATGGAT
TCCATGACAAATCATCCTTCATCTATTTCACTGCAGAACATAATGATTAC
TATACCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGA
TTTGTTTGATCAAGGAGTCGGAAACAATGTAGGAAAACATTGTGTTTACG
TCTACGCATCGTTCTACAAAAGTTATAAGCAAGGActtgatttttaaaat
gattGTAAATAAACTTTATTACCAcgtttgaatattttttcaatttttca
tattttctataattttttccatggtcattttaaataaaatcttaaaGTTT
TATC
Run BLAST on NCBI

protein sequence of TCONS_00061674-protein

>TCONS_00061674-protein ID=TCONS_00061674-protein|Name=TCONS_00061674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MLVIYILAVALVTIQVQASANNPFTYEDNLKAVDAYFCRGKSGNYRHPNG
ACDYYIACGVGCKNARSRRSYRHLCTQNIMPCPGGLFYDEKAYGGYGACI
YKAESNCLQFQGEVCYGSTQESYGTYTHQCTGQVTLLKLVSKSGSVGCYK
GVTPGYWGGCPHAPPINVWITEHRGDNFKYVKKSYYDIKHDVKFPEPFTA
YDANKYGFYYLNGFHDKSSFIYFTAEHNDYYTYFIKGKKYRVYYGEDLFD
QGVGNNVGKHCVYVYASFYKSYKQGLDF
Run BLAST on NCBI

transcript from alignment at scaffold_36:943146..945425-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061674 ID=TCONS_00061674|Name=TCONS_00061674|organism=Clytia hemisphaerica|type=transcript|length=2280bp|location=Sequence derived from alignment at scaffold_36:943146..945425- (Clytia hemisphaerica)
ATAAATTTTGTAACAGAATGATTAATTTCCCTGGTCCTCACAACAATTTG
GTGTATAAAAGGGGGAAGTTTTGAGGGATGGACATCATCTCACAGCTCAT
TACAGCTTGTGAAGAAGAACAAAACACAAACAGAAAAAAGAAGATCAATT
CACAAGCATCATGTTGGTAATCTATATTCTAGCCGTTGCTTTGGGTAAGT
GCTTTATCAAGCCTTAAACAGGACATTCTTAATTCAGTGTTCTGATAAAA
TTTCTAAAAAATCCATGTGTCAAATACCTGCTGGGGCCTACGCCCCATTA
GGAAATTGACTTTGATTTCTAATCCATTTGAAAAAAAATGCACTTTGAAA
CCATCCCCACTGGATTTTCAATTTAGGAACATTAGAATGTCCATCCCCAT
TGAGATTTTCCACTGTGAGAAAACTCTCGCCGGGGCTGTGTAACAAAGAT
GTTCTGAGCCATGAAGAATAGACAATGCCGGGTGAAAAATGTCATATGTT
AGATAGATGAATTGAATTCTATTTTTTACATTTTACGTTGGATTTTTCGA
TGAAAAATTTGCAAAGGCTATCTAGATTCTTGTGGACACGATTGAAATTT
TGCCATTTTGTATATCTCATATTCCTTTTTTATGTTATAGTGACAATCCA
AGTGCAAGCCAGTGCTAATAATCCTTTCACCTACGAAGACAATTTGAAAG
CTGGTAAGTAGGAATTCATTTAATTTGAATCAAGTGAAGACAATAACGTT
TATAAAGTTGTAGCCTTAAAGAGGGTCTATAAAGTGTCAAAGCTATGTAA
TTTGAGTGTATTTTTTGCTTTAATGGGATAAATTTGGGGGAATTAAATTT
CGCGGCTGCAGCTTTTAGAAAGACATTATTTTCACGATTTTGGGCCTTTT
TACGCTAAATTATGCATGTCAGTTGTCGAAATATTCTTAATTTCGCGGGT
CACACCAAACTCTGCATAAACAGCTGATGAAACCATTCTCCTTCTTTTCT
TTATTGAGTTATTGAGAAATTCATCATCACCATAATTTCCTTTTTTTATA
TTTTAGTCGATGCATACTTTTGTAGGGGAAAATCTGGCAATTATCGCCAT
CCAAATGGAGCCTGCGATTACTACATAGCCTGCGGTGTTGGATGTAAAAA
TGCTAGAAGCAGACGATCATACAGACACCTTTGTACACAAAACATCATGC
CGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATATGGA
GCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTCCAAGGAGAAGT
TTGCTATGGATCCACTCAAGAGTCATAGTAAGTACTTGTTTCTAGCAATA
AAGCGACCGCCTTATAAGACACAAGCCAAATTCATTAATCCAAAACTTTT
TGGGCGAGTTTTTACTGAACGAGCTTCCTAGCCTATTATTCACGAAACGA
GAAGGCTTTCACTGATTTCGTTGAAAGCTTGTCTATGATTCCCTGACTTG
ATATGTTTTNTATGAAACGAGAATAAACACTTTCACTGATTCCCTGACTT
GATATGTTTTGTCGACAAGCCTTCCATTGAAACATTATTTTGTATTAACT
TGAGGCTTATTAATTTCTGAATCTTCAAAAGATTTCGTTTTCACCACCTT
GGCGATGGCATTCACCAGAAATAAAAGTTGATATAAGTTTTGTTATTCTT
ACAGTGGCACTTACACTCATCAATGTACTGGACAAGTCACCTTATTGAAA
CTCGTCTCCAAATCTGGAAGTGTTGGATGTTACAAAGGTGTCACGCCTGG
TTACTGGGGTGGATGTCCACACGCCCCACCAATCAACGTCTGGATCACCG
AGCACAGAGGTGACAACTTCAAATACGTCAAAAAATCATACTACGACATT
AAACATGACGTCAAATTTCCCGAACCATTCACTGCTTACGACGCCAATAA
ATACGGATTCTATTATTTGAATGGATTCCATGACAAATCATCCTTCATCT
ATTTCACTGCAGAACATAATGATTACTATACCTACTTCATCAAAGGAAAG
AAATACCGTGTCTATTATGGTGAAGATTTGTTTGATCAAGGAGTCGGAAA
CAATGTAGGAAAACATTGTGTTTACGTCTACGCATCGTTCTACAAAAGTT
ATAAGCAAGGACTTGATTTTTAAAATGATTGTAAATAAACTTTATTACCA
CGTTTGAATATTTTTTCAATTTTTCATATTTTCTATAATTTTTTCCATGG
TCATTTTAAATAAAATCTTAAAGTTTTATC

Coding sequence (CDS) from alignment at scaffold_36:943146..945425-

>TCONS_00061674 ID=TCONS_00061674|Name=TCONS_00061674|organism=Clytia hemisphaerica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_36:943146..945425- (Clytia hemisphaerica)
TGGCACTTACACTCATCAATGTACTGGACAAGTCACCTTATTGAAACTCG
TCTCCAAATCTGGAAGTGTTGGATGTTACAAAGGTGTCACGCCTGGTTAC
TGGGGTGGATGTCCACACGCCCCACCAATCAACGTCTGGATCACCGAGCA
CAGAGGTGACAACTTCAAATACGTCAAAAAATCATACTACGACATTAAAC
ATGACGTCAAATTTCCCGAACCATTCACTGCTTACGACGCCAATAAATAC
GGATTCTATTATTTGAATGGATTCCATGACAAATCATCCTTCATCTATTT
CACTGCAGAACATAATGATTACTATACCTACTTCATCAAAGGAAAGAAAT
ACCGTGTCTATTATGGTGAAGATTTGTTTGATCAAGGAGTCGGAAACAAT
GTAGGAAAACATTGTGTTTACGTCTACGCATCGTTCTACAAAAGTTATAA
GCAAGGACTTGATTTTTAATCGATGCATACTTTTGTAGGGGAAAATCTGG
CAATTATCGCCATCCAAATGGAGCCTGCGATTACTACATAGCCTGCGGTG
TTGGATGTAAAAATGCTAGAAGCAGACGATCATACAGACACCTTTGTACA
CAAAACATCATGCCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTA
TGGAGGATATGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAAT
TCCAAGGAGAAGTTTGCTATGGATCCACTCAAGAGTCATATGACAATCCA
AGTGCAAGCCAGTGCTAATAATCCTTTCACCTACGAAGACAATTTGAAAG
CTGATGTTGGTAATCTATATTCTAGCCGTTGCTTTGGTGGCACTTACACT
CATCAATGTACTGGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGG
AAGTGTTGGATGTTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTC
CACACGCCCCACCAATCAACGTCTGGATCACCGAGCACAGAGGTGACAAC
TTCAAATACGTCAAAAAATCATACTACGACATTAAACATGACGTCAAATT
TCCCGAACCATTCACTGCTTACGACGCCAATAAATACGGATTCTATTATT
TGAATGGATTCCATGACAAATCATCCTTCATCTATTTCACTGCAGAACAT
AATGATTACTATACCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTA
TGGTGAAGATTTGTTTGATCAAGGAGTCGGAAACAATGTAGGAAAACATT
GTGTTTACGTCTACGCATCGTTCTACAAAAGTTATAAGCAAGGACTTGAT
TTTTAATCGATGCATACTTTTGTAGGGGAAAATCTGGCAATTATCGCCAT
CCAAATGGAGCCTGCGATTACTACATAGCCTGCGGTGTTGGATGTAAAAA
TGCTAGAAGCAGACGATCATACAGACACCTTTGTACACAAAACATCATGC
CGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATATGGA
GCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTCCAAGGAGAAGT
TTGCTATGGATCCACTCAAGAGTCATATGACAATCCAAGTGCAAGCCAGT
GCTAATAATCCTTTCACCTACGAAGACAATTTGAAAGCTGATGTTGGTAA
TCTATATTCTAGCCGTTGCTTTGGTGGCACTTACACTCATCAATGTACTG
GACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGGATGT
TACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTCCACACGCCCCACC
AATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTTCAAATACGTCA
AAAAATCATACTACGACATTAAACATGACGTCAAATTTCCCGAACCATTC
ACTGCTTACGACGCCAATAAATACGGATTCTATTATTTGAATGGATTCCA
TGACAAATCATCCTTCATCTATTTCACTGCAGAACATAATGATTACTATA
CCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGATTTG
TTTGATCAAGGAGTCGGAAACAATGTAGGAAAACATTGTGTTTACGTCTA
CGCATCGTTCTACAAAAGTTATAAGCAAGGACTTGATTTTTAATCGATGC
ATACTTTTGTAGGGGAAAATCTGGCAATTATCGCCATCCAAATGGAGCCT
GCGATTACTACATAGCCTGCGGTGTTGGATGTAAAAATGCTAGAAGCAGA
CGATCATACAGACACCTTTGTACACAAAACATCATGCCGTGCCCAGGTGG
TCTTTTCTACGATGAGAAAGCTTATGGAGGATATGGAGCTTGTATTTATA
AAGCTGAATCTAACTGTCTTCAATTCCAAGGAGAAGTTTGCTATGGATCC
ACTCAAGAGTCATATGACAATCCAAGTGCAAGCCAGTGCTAATAATCCTT
TCACCTACGAAGACAATTTGAAAGCTGATGTTGGTAATCTATATTCTAGC
CGTTGCTTTGGTGGCACTTACACTCATCAATGTACTGGACAAGTCACCTT
ATTGAAACTCGTCTCCAAATCTGGAAGTGTTGGATGTTACAAAGGTGTCA
CGCCTGGTTACTGGGGTGGATGTCCACACGCCCCACCAATCAACGTCTGG
ATCACCGAGCACAGAGGTGACAACTTCAAATACGTCAAAAAATCATACTA
CGACATTAAACATGACGTCAAATTTCCCGAACCATTCACTGCTTACGACG
CCAATAAATACGGATTCTATTATTTGAATGGATTCCATGACAAATCATCC
TTCATCTATTTCACTGCAGAACATAATGATTACTATACCTACTTCATCAA
AGGAAAGAAATACCGTGTCTATTATGGTGAAGATTTGTTTGATCAAGGAG
TCGGAAACAATGTAGGAAAACATTGTGTTTACGTCTACGCATCGTTCTAC
AAAAGTTATAAGCAAGGACTTGATTTTTAATCGATGCATACTTTTGTAGG
GGAAAATCTGGCAATTATCGCCATCCAAATGGAGCCTGCGATTACTACAT
AGCCTGCGGTGTTGGATGTAAAAATGCTAGAAGCAGACGATCATACAGAC
ACCTTTGTACACAAAACATCATGCCGTGCCCAGGTGGTCTTTTCTACGAT
GAGAAAGCTTATGGAGGATATGGAGCTTGTATTTATAAAGCTGAATCTAA
CTGTCTTCAATTCCAAGGAGAAGTTTGCTATGGATCCACTCAAGAGTCAT
ATGACAATCCAAGTGCAAGCCAGTGCTAATAATCCTTTCACCTACGAAGA
CAATTTGAAAGCTGATGTTGGTAATCTATATTCTAGCCGTTGCTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038674XLOC_038674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061674-exon-scaffold_36-1575043694:945232..945425TCONS_00061674-exon-scaffold_36-1575043694:945232..945425Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1575043694:944723..944785TCONS_00061674-exon-scaffold_36-1575043694:944723..944785Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1575043694:944099..944369TCONS_00061674-exon-scaffold_36-1575043694:944099..944369Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1575043694:943146..943721TCONS_00061674-exon-scaffold_36-1575043694:943146..943721Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1510915933:945232..945425TCONS_00061674-exon-scaffold_36-1510915933:945232..945425Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1510915933:944723..944785TCONS_00061674-exon-scaffold_36-1510915933:944723..944785Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1510915933:944099..944369TCONS_00061674-exon-scaffold_36-1510915933:944099..944369Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1510915933:943146..943721TCONS_00061674-exon-scaffold_36-1510915933:943146..943721Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1491911889:945232..945425TCONS_00061674-exon-scaffold_36-1491911889:945232..945425Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1491911889:944723..944785TCONS_00061674-exon-scaffold_36-1491911889:944723..944785Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1491911889:944099..944369TCONS_00061674-exon-scaffold_36-1491911889:944099..944369Clytia hemisphaericaexon
TCONS_00061674-exon-scaffold_36-1491911889:943146..943721TCONS_00061674-exon-scaffold_36-1491911889:943146..943721Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061674-proteinTCONS_00061674-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:943146..945425 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.733997	0.271187	0	0.155681	1.94198	0.847112	1.94666	1.96682	0.756036	1.39872	1.8077	1.68473	19.2842	8.91183	374.984	72.4605	2.06725	1.2852	1.11773	0.634744	0.232419	0.401727	0.305641	0.306311	0.46749	0.867894	0	0.115895	0.102458	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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