TCONS_00061659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061659
Unique NameTCONS_00061659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061659 ID=TCONS_00061659|Name=TCONS_00061659|organism=Clytia hemisphaerica|type=transcript|length=2005bp
CACCGCACCCGCTGACCGCGCAGTATGCAGTACGCGTATTACAGTCTTAT
TCGCCGtcAACGATGTTATTCTATATCCCTCAATTGGTGCAAGCATTGCG
CTACGATCAACTTGGATACGTCGAGAATTATATCTTGTGGGCGTGCAAAC
AATCCCAACTTATTGCACATCAGATAATCTGGAACATGAAAACGAACATT
TTCACTGACGAAGACTCTAAAAACAAAGACCCACAGATCGGTGACAAACT
TGAGAAGTTGATCGAAATGATTACGTCATCACTATCAGGCCCAGCTCTCA
AATTCTATGAACGCGAATTCGATTTCTTTAATCGTGTCACAAATATCTCC
GGCGAAATCAGGCCCTACCCGAAAGGTGCCGAACGTAAAAAGGCGTGCCA
AGAAGCACTCCGCAAAATCCAAGTCCTACCCGGTGTATATTTGCCGAGTA
ACCCGGAAGGAACCGTGACCGGTATAGATTACACCTCCGGTATACCGATG
CAAAGTGCAGCAAAGGCTCCATTCCTGGCGAGATTCCAAGTCCGGAAATG
CGGGATACAAGAGTTGGAGGATCTGAATACGTCtgACGAGACGGATAACT
TATCAGACCAGAATGTGGAGCACGGTGAAACATACACCCTCGGCTGTATC
TTCAAAGTTGGCGATGACGTCAGGCAGGACATGCTCGCGCTTCAAGTTAT
ATCGCTATTCAAGAAAATATTCGATAAAGTGGGTGTGGATCTTTATCTGT
CGCCGTACCGCGTCGTAGCGACGTCGCCGGGTTGTGGGGTCATCGAATGT
GTACCTGATGCAAAATCACGGGATCAGCTTGGAAGGCAAACGGAAGTGGA
TTTATTTGCTTACTTTAAAAGCACGTATGGGGATGAACGGACTCTGCCTT
TCCAAGAGgCGAGGGAGAATTTCATACGAAGCATGGCAGCTTATTCAGTC
ATAAGCTTCTTGTTACAAATTAAAGATCGCCATAATGGAAATATCATGAT
CAATAAAGATGGGTTCGTCATTCACATAGatttcGGTTTCATGTTCGAAT
CATCGCCTGGTGGTAACCTTGGTTTCGAACCAGACATGAAGTTAACGCCC
GATTGGGTAAATCTGATTGGCGGAAATCTTGACGCCCCTAGTTTCAGatG
GTTCATGGAGCTATGTGTCCGAGCTTACCTTGCAGTCCGACCATACACGG
AAGCCTTTGTATCTTTGGTAGCATTGATGTTGGATACAGGACTTCCATGC
TTCAGAGGAGAGACGTTGAAACGGCTCAGACAACGTTTTGCACCAACTCT
TACTGAACGCCAAGCATCAGAATACATGATTCAAATCATCAAAGATTCCT
ACCTCAACAAACGAGCAAGAGCTTATGATATTATTCAACTTGTTCAAAAC
GAAATCCCATGTTGAAGTTATGGTAACACCATGGCAACATTCAACAAACA
AATCGATTTAGTCCTCTTGTGCGAAGTCATCTGGTGGTGGTAAATCCAGA
AAACGTCATAGAAGCTGACATCATATTCATGACATTGAAGCATCTTATTG
TAACATCTTGTCTTTTTTGGGTACTTCCGTATGAAAAGCTACATCATAAA
TAGTGTGCAAGATTTTGATCCACGAAAGCATTGTGAAAGCAGGgcaattt
tacagaccaagtATTCTTTGCGTACAGAGACCTTGTTTgaataaattgca
aacttttACTTTCAGTTTCTGTTTTTGTATTATATGATTCATTAATTTAT
TGAAATTGTCCATTGTTATTTCGTACTATGTCAATCGTATTTTGATCATT
TAGCTCTTGAAAAGAAGGTCAAATTTTGTCATACTCACGCCCTTTGTGTA
ATTTCATGGATTTATTCGGTTTAGGTTTTAGTTTTTTAAGTATAAATCGT
GAGCtaatgatttttaatttattttagaatttagaatttttttttgagta
aTTTCATTAAATTATGCACCTCCTAAAATTAGAAGATAATTATTTACCAT
TCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_36:451394..460744-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061659 ID=TCONS_00061659|Name=TCONS_00061659|organism=Clytia hemisphaerica|type=transcript|length=9351bp|location=Sequence derived from alignment at scaffold_36:451394..460744- (Clytia hemisphaerica)
CACCGCACCCGCTGACCGCGCAGTATGCAGTACGCGTATTACAGTCTTAT
TCGCCGGTAAGGATCTGTTGTTTCTATCTTTCTTCGACTTTTAAAAAAAT
CCAGTAATTTTTTATTGAGGTCCGACTGCTCCTTTTTGCCTTCAATACAC
CTTTTCGACCGTAGTCGCCGATTGCCGCTCAAACATTTTTTGTCCGCTTT
ATCCCACTAAAACCGTCCCAGTCCTTTTTTCGCACCCATAGACAATAGAA
AAATATGTAAAAAAGGATTGGATCTAATTTAGGGGGATAATTAAATAATT
AAGTGGCACGCGCCAGACCACGCGACTACAGTCGTAAAGGTGTATCTGGT
TCTTGTTTTACGGTAGAACTAATTCTTTTTTTATGATTTAGACTCAAAAA
TACTACGAGTTATGAACTAGTAAGGTTTATGAGGTAAAGTTAACATCGGA
ATTGTTCGAGTTAAGGAGACATTTGAGTTATAGAGGTTCGAGTTATAGAG
ACTCCACTGTAATTTGCTCTTGTGACCAAAATTACGGTGAAAACCCATTA
AGCGTTTTTTTACTTCATATTTTTCTTTCAGTCAACGATGTTATTCTATA
TCCCTCAATTGGTGCAAGCATTGCGCTACGATCAACTTGGATACGTCGAG
AATTATATCTTGTGGGCGTGCAAACAATCCCAACTTATTGCACATCAGGT
AAGATCAGCTTAACAAGGTGGGTTACATGCTAAAAATGGGTTCTTAAATA
TCCACTTGCGAGCGCTGCTTTTTCCCGTAAACCGCCGTGATGACTGTAAA
ATCTGCGCATATTTTCTTCTCGCTTTTACTACCCCTCTAACGGACGGTAG
CATCGTTTTTGTCCGCTATTTTTAAAGGCTTTGTTTTTAAATAAGTGATA
TTATTTGCTTACTCATCACTTTTAATTCGCAAGCTTTTTCACATTGAATT
GACACGGAGGTGAAGCAAGATTGGCCAGTAAGAGGAAAAGAAAAACATTT
TTTGCTTATATCAACCTAATAAACAACAATAGGAAGACACTGTCCTGACA
CAAAATATGTGTCTGATATGAAAGGGGAACACTTATGTAAAAACACCTTT
AAACATAGCGGACGTAGATGATGCTATCGTCCGTTAGAGGAGAGGGATAG
TATACGCGAGAAAAAAACATGTGCAGATTTTACAGCCATCATGGCGGTTT
ACGGGAAAAAAAGTGGTGGTAGAGTTTGGAACAAACAGACGAAACCAATT
TGGTGCACCTCGACATAGAAATCTTTGCATGACCGTCCTCTTAGACAGGT
CGGCGGGTTTTCGAGATTTCCCGTAGAGAAGAGCTTGCGTTTTTTGTTCG
AACCAAAAGAGCCGAACGTTTTGAGCAGTATGCCTATTTATGTCTGACAT
GAATATTATTAGATACCAAATACCACCTCGTTTCATTGAAAAAGAATAGA
AGTATGTTCGAGATATTTTTAACGAACTTCGGGGACATAAATCCCAAATC
ACACTCCAAATCATGTTATTACTAGTACTTATTGTCTTTCCCAGCTGGCA
CACAGCGGGCACACAGCGTTGTCCCAACGTTCATCTAACGTTATATGGAC
GTCGTGAGCATTAGATAAACGCTGAAACAACGCTGTTTACCAGCTGGGTT
ACGTCAGTTTTTAAATCAAGATACTTTATCCATCTGGATAAGGCTATCAC
TGTGTCTCACTAACATTCTGCTGATTGTTAGTGTGAAAGTTTCGATCACT
GACTTGTACCGCAATGGACTGTGTTCGAATCCCAAGCCCTTCTGGAGAGG
GTGTTAGGGAATATCGTAAAAAAGATGTCACGGGACCCCAGGCTTGGCCC
CCTACTATAATGCTCAAGCTTAAAGAATATCGTGATAGACCCTCTACCTC
CACTCCTATATCACGATATTCTTTAAGCTTGAGCATTTTAGTAGGGGGCC
AAGCCTGGGGTCCCGTGACATCTTTTTTACGGCCTAGCCATTTTTAGTCT
ATTCCAAAGAACAGAATATTACAAGATATTTTTGAGAGGGAGGACGCGGA
TTAGGTCCGGGAAAACTTTTTATGACCAAAATTATTTAAGTATTTTTCAA
GAAGTCTATCTTTCACATTTAAATTTGAAAATCTTCTTTCTTTTCTATTC
TCAGATAATCTGGAACATGAAAACGAACATTTTCACTGACGAAGACTCTA
AAAACAAAGACCCACAGATCGGTGACAAACTTGAGAAGTTGATCGAAATG
ATTACGTCATCACTATCAGGCCCAGCTCTCAAATTCTATGAACGCGAATT
CGATTTCTTTAATCGTGTCACAAATATCTCCGGCGAAATCAGGTTAGTAA
ATAGGCTGCACGCATCCCCTCTGATATGTTTTGATTAAGATTAATATTAC
ATATCAGTGTTAAATTTCCACTCGAAAAATTATCTGAACAAGCACATATA
AATCAGCGATGATAGATTAGTGATTTTTTATTCATTTTTTTTATTACTCA
GGCCCTACCCGAAAGGTGCCGAACGTAAAAAGGCGTGCCAAGAAGCACTC
CGCAAAATCCAAGTCCTACCCGGTGTATATTTGCCGAGTAACCCGGAAGG
AACCGTGACCGGTATAGATTACACCTCCGGTATACCGATGCAAAGTGCAG
CAAAGGCTCCATTCCTGGCGAGATTCCAAGTCCGGAAATGCGGGATACAA
GAGTTGGAGGATCTGAATACGTCTGGTAAATTATTTTTATCCTTAGATTA
CGGTTAATTAAGGAAGTTGGAATAACTGAGGGTTTGAACAATTTAAAACC
TGTATTTCCAACCGAATTTGAAACTTTCATTTTCGATGTTTAATCTTACG
AACAAATTGAGGCATTACAACAGATTACAATATTATCTTGAAATTTCAAT
AGTTCCCAAGACCAATGGAGTTGGGATAACCAAAAACTTCAAATTAGGCG
AGACCAATTTAATTTGTTGTTCTCCGGGCAGATCGTTAGCAAAATATGCG
TCGGTCGGTCGGTGAAATAAGAATAAATTTTTCATTTATCAGGGTTGGTA
AAGTACCGAAAATGTTTTCCAAAAAATATCTGGTTCAAAAATTCACTTTT
TTTTATGTTTGATGAAGATCATAATAAAATCTTAGTGTATGGAATGCTTG
ATTTTCTAAATTTTTCAATTTCTTGATTTAATTTTCAGCTTTATTCAAAT
TTGATTCTTACAAATAAGTTTGTAGTTTAAAATATATTGTAGTGGAAATT
CAATATTATAGTTTTTTTGATTTTGGCGAAAATAGGGTCGGTCGGGCCCG
TAGAACAACAAATTAAATTGTTCTCGCCTTAATCAAGGACTTTTAGACAG
TTTTTTTCTTTGCACTCTGGCCATGGCCAGCCGGCTCGACTATCTATCAA
CCCAACGGATCATTTGAAGGAGCGGGGATTCGAACCGGGAACGTTTTTTT
TCTTTTTCTGGAGCTTTTAACAAATTTGACCACTTGGTTATTGCTCATTC
TCATAGCAATTTTTGATTTAAATTCCTCCACCTTTTTCAGACGAAACGGA
TATAACCTCTTATCTGACCAGAATGTGGAGTTATAGAGTTAGGTTTATAA
GGGATTGTTAACTGAAGAGACTAGAAAACTTGCTCGATTTAAAGAGTTTT
GAGTTTGAAGAGACTCTACTGTATCTTTAACGCCTTTGACCACTCTGACT
TTCTCTCCTTATCATTACCATGCTTGAATTTGTAGTTTTCCTCATTTTCA
GACGAGACGGATAACTTATCAGACCAGAATGTGGAGCACGGTGAAACATA
CACCCTCGGCTGTATCTTCAAAGTTGGCGATGACGTCAGGCAGGTTGGTA
ACACGTTCTCTATTTTATTACATAGCCACCCAGTGAACTCAAAAATTATT
TTCTGACGGCTAAAGATTACAGATTTCTCAGCTCCGGCTTCCATCTATCT
CGAACCTAAAAATCTTTTCGATTTACATTAAAGTGATAATCAGCTAGTTG
CAAAGGTTGAGATATCTAAAGTCTGTTCACGATACGTGTTAATAAGTGAT
TGACCCAAAAAAACAGCAGAAAACAGCAGAAAACAGGGTTTTTTTGACGT
CAATCAGCTTAAAACTTTGTTTGATATCTTTTGACTGAATGATTACTATT
GAGAAATTTTTCACAGTGATGGCGTTCGATGATCAAGGATTCACTTCAGT
GAAAATTATAGTTACACCACTTTTCTACAAGATCTTCATTTTTTTTTCTT
CATTTTCATCTTTATTTTTGGAATTATTTTGAAGATTTTTTCATTTCAAA
TTGTTCCACTCACAAATATCTCTCCAACGATACCAAATTTATAAAAATTG
AAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCGCACTTAT
CGTGAATAGACTTTAACTACTAAACCTACAGGTAATAACGGATTACATTC
GATCTCCTTTTATTTTTTTCTCGAGATACAAATAGGAATGTAATCTGAAT
AGCAGACCTCTATAGACACAATTTCTATAGGAAACTTTTTTTTGCTAGTG
GAAGAACAGAAGCCTAAGAGAAATGATTATCTTGGATTCTGGTTCGAGAT
ATAGATAAAACTACAATAGGCGCCGAAATATATTGGCAATTTTGGCAATT
TTAACGTTTTTCAGAATTTAAAGATCGGGTGAGAATTGCAGTTTCAGTAC
TTCCACTTTCTTTCAGGGGATTTTTTCGATTTGGGAGTCTTATGTCTAAT
GTTAAAACTCTACTTTCAAACCGTACTTCAAAGCACTTTGTGCCAAATAT
TTCGGCGCCGATTGTAGAGAGCTCACAAAAGTTCCTGGTATAAGAATGTT
TAGCTCGAAATAGAGAAATAGATAATACTTATTCTCTTCTTCAATATTCC
AGGACATGCTCGCGCTTCAAGTTATATCGCTATTCAAGAAAATATTCGAT
AAAGTGGGTGTGGATCTTTATCTGTCGCCGTACCGCGTCGTAGCGACGTC
GCCGGGTTGTGGGGTCATCGAATGTGTACCTGATGCAAAATCACGGGATC
AGCTTGGAAGGCAAACGGAAGTGGATTTATTTGCTTACTTTAAAAGCACG
TATGGGGATGAACGGACTCTGCCTTTCCAAGAGGTAAGATGCCTATCCGC
CATTCAAAGTGGAGACTATCAAAAATAGAACGGATTTTGTTACTACTGAA
TGGCGATTTTAATTGGATTTATTTTCGCCGAGAAAATTGCGAAATTTACT
GGATTCATTTTTTGCCATTCGGCTTATTGAAAAAAATTGTTGGAAGTAGC
CCTGTAATAAAATATTTACGGACTATATTTAAACTGAAATCTGATTTTAA
CAAATTTTGCGAGGATTTAATTTCACGTAAGCCACATCATGCGATTTGGT
GAGTTTTATTTTCAACGCGAAATTAAACTCGTGCATGTTAATCAGATTTG
AAAACTGTAAAGGCCAATTTATTGTTCTAGTTATTGTTTATCTATCTGCA
GACACGTGTTTCGTCCTTCCCAGGACTCATCAGTGCAGCTCTGGTAAGCG
AGCATAGACTGCTGTCATCACCAGAACGCATAACGCATAATCGCTTGTGG
TGTCCAATTTAGATAACGAGACGATTTTACTTTATATGAAAATTTGTCCA
TTTTTCTTTGGGACACATTGTAGTCATTCTTATTTTTCTCTTTTTTTTTT
ACTAGGCGAGGGAGAATTTCATACGAAGCATGGCAGCTTATTCAGTCATA
AGCTTCTTGTTACAAATTAAAGATCGCCATAATGGAAATATCATGATCAA
TAAAGATGGGTTCGTCATTCACATAGGTGAGTTTTTGTTTACGGGGCTTG
CACAGAACGCTAAAACGACGTATTTTTAATAATGTCCATACACCTTTTTA
AAAAAACGTCAAAAAGTTCTTGAGCCTTTGAATGTATTTAACTTTTTGTT
GTTTTTTTTAAGCATGAAATATACTTGAAGTGTTTTTATTTTCAACACTT
TGTTAGTATTTCGGTCTAATTTTCTATGAAATTGTATGTTTTTGTTCTTC
TTTGTGGATACTACTTTTAAAAAGAAATTGTGATCAAAGATGGCGGATAT
AGCTTTGTCAAGGGTTTGTAAAGGTCATTACTGAGGTTAAGCATACCAGG
ATAATCACGACGACGGACGAAAAATGTAACAGGATTGTAAAAATACGAAA
TTTGATTGGTTGAAACTCACTAGCCTGTTAAATTTTCGTTCGTCGTCGTG
ATTTTTGCCGATTTACTTAACCTCACTATTGAATATTCCCAAAATCATAA
CTTTTTTTGAATTTACTGAATGGATTTCATACTGGCTGATTTCATTTTTC
AGATTTCGGTTTCATGTTCGAATCATCGCCTGGTGGTAACCTTGGTTTCG
AACCAGACATGAAGTTAACGCCCGATTGGGTAAATCTGATTGGCGGAAAT
CTTGACGCCCCTAGTTTCAGGTAGATTTTTTTTGGGATTTCTTTCCGTGC
AAAGAGAATCTATATATGCACACATGAAAATTTCAAATCCCAAATCTCAA
AAATATTTTGATTTATTTGAATTAAACTATATTTGTTAGATTTGAGCCTC
ATGTAAAGAAGTGTAAAATATTTTATTATTATTTTAGATGGTTCATGGAG
CTATGTGTCCGAGCTTACCTTGCAGTCCGGTAAGTGTTTCGTTTTTTTTT
CTACACGCCCATTCGTTATCTTTAAAATCTTCTTGTTTTAACATTGATTA
ATTTGTGCTCCTGCGGCGCTGAAAAACGGAAAAGTTGTTCATTTTTTAAT
CAAAGAAAGCTTTTTCTTTAAAAATGATGTGTAAGCAAATGGTAAAAGAT
ATGTTAAATGATGTCGTTTAAAGCTGCAAAAATCATTGAGGAGGTCCATC
CCTCTGTGGCTGGAAATACTGTAACTCCCTGGAATTCCAGGCAATCTCAG
GTGTAAACCCCTCTGGAATTCTGAATTTTAGTAGGATTTAAAAGCTACCC
NGGAATTCCAGGCAATTTCAGGTGTAAACCCCTCTGGAATTCTGAATTTT
AGTAGGATTTAAAAAGCTACCTCCATGGAATTCCAGTTATTTTTGACAGA
TTTTTGTATCTCCCTATGGAATTCCGCCACATATCAACCCTTGGAACGGA
AATGGACCTCCTCAACAGGGGGTATACGTCTTTTTTCTGGAAAAGCCCAT
TATCTTAAAAAACCTTATTGGAATTCCAGTTATTTTTGACAGATTTTTGT
ATCTCCCTATGAAATTCCGCCACATATCAACCCTTGGAACGGAAATGGAC
CTCCTCAACAGGGGGTATACGGTTTTTTTCTGGAAAAGCCCATTATCTTA
AAAAACCTTATTGTTTTAACATTGATTACCCTTCGTTGGAAAGATATTTC
AATCACTCACTTTCTCTGTCAGACCATACACGGAAGCCTTTGTATCTTTG
GTAGCATTGATGTTGGATACAGGACTTCCATGCTTCAGAGGAGAGACGTT
GAAACGGCTCAGGTATGAAGTTCAACCCCTCATCCCTGTTGATTTAGTGT
CTAGAAGAGCTATTATTATTATTAGCTTCTATAGGCTTCTGCTCATCCTC
TAGCGAAAAGGTTTTTCATAGAAATTGAATTTCTAAAACCAAAAAATTTG
CAACTCGCCAAAAAAGAATAATCGGCCACCATAATGAGCAACCGTAGCAG
GCAAGCAATACACTAATTAAGCAGACCTACATAGGAAGTATATCACAAAG
GTTTGCGATTCAGACTAAGGTATTATACAAACAACTTCAACGTAAAAAGA
CAACAACTTATAGTGATTGCTCGATCTATTTTACATCCTAATGTACAAGC
CCCCAATGGATTTTTTCTTACATTTTTCTTCCTACTTTCTTTCCATTGCC
AGACAACGTTTTGCACCAACTCTTACTGAACGCCAAGCATCAGAATACAT
GATTCAAATCATCAAAGATTCCTACCTCAACAAACGGTAATATGGTTATA
TCTCTTATTCTATCCCCCTCTTTGGGGAAAGGTGTACGGGTTTGATGGTG
AAATGATCCTTTTTTTCTGTCGGCTGTGTCAAAATATGAATTTTAATAAA
TTCTGCTGTGCTGTCAGTGTTTGCTATTCCCGTACGCCTGCGCTCTCTCT
TTTCCTTCATCACCAGATCTCTAGGTCATATCAACCCTTCTTTAACTGAG
AACTTAAATTAAAAATTTTGGATGATTTACCCCACTGTGATTTACCGGGT
TTTATGTTGAACACTTACAGTAAACTCTGGCTTATTCGAACCTTTTTATA
ATTCGAACTTGTTCTCAGTCCCCGTCAAGGGACCGGCAATGAGAAACCCT
CTTAAAACACATTCTATAATTCGTTTCTCTCTGTAATTCGAACAAATATA
AGATTCCCCGTTCGATTTTGAATAAGATTATGCACTGATCAGAACATTTC
ATGTCAAAGCTTTATAAGTGGTATGTACCTCAAAGGAATAAATTTTGGCG
GGATGAAAATTTGGCGAATTTATTTTTTTTTGGCCAAATTTAATTTTGTG
TATTTTTCTAAATTTGTGCCTTTTCAGAACTTAACACATATTTTTTGCTC
ATTTGATATTGACTTCTGTCCAAAAATATAACAACCAAATTGAGTCTATC
CAATAAAGTTCATCCTCTAGCAACAATCTGTTTATCATTTCTTCTAATCC
ATTTTTCAGAGCAAGAGCTTATGATATTATTCAACTTGTTCAAAACGAAA
TCCCATGTTGAAGTTATGGTAACACCATGGCAACATTCAACAAACAAATC
GATTTAGTCCTCTTGTGCGAAGTCATCTGGTGGTGGTAAATCCAGAAAAC
GTCATAGAAGCTGACATCATATTCATGACATTGAAGCATCTTATTGTAAC
ATCTTGTCTTTTTTGGGTACTTCCGTATGAAAAGCTACATCATAAATAGT
GTGCAAGATTTTGATCCACGAAAGCATTGTGAAAGCAGGGCAATTTTACA
GACCAAGTATTCTTTGCGTACAGAGACCTTGTTTGAATAAATTGCAAACT
TTTACTTTCAGTTTCTGTTTTTGTATTATATGATTCATTAATTTATTGAA
ATTGTCCATTGTTATTTCGTACTATGTCAATCGTATTTTGATCATTTAGC
TCTTGAAAAGAAGGTCAAATTTTGTCATACTCACGCCCTTTGTGTAATTT
CATGGATTTATTCGGTTTAGGTTTTAGTTTTTTAAGTATAAATCGTGAGC
TAATGATTTTTAATTTATTTTAGAATTTAGAATTTTTTTTTGAGTAATTT
CATTAAATTATGCACCTCCTAAAATTAGAAGATAATTATTTACCATTCAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038666XLOC_038666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061659-exon-scaffold_36-1575043694:460689..460744TCONS_00061659-exon-scaffold_36-1575043694:460689..460744Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:460047..460163TCONS_00061659-exon-scaffold_36-1575043694:460047..460163Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:458403..458590TCONS_00061659-exon-scaffold_36-1575043694:458403..458590Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:458020..458243TCONS_00061659-exon-scaffold_36-1575043694:458020..458243Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:456902..456993TCONS_00061659-exon-scaffold_36-1575043694:456902..456993Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:455612..455842TCONS_00061659-exon-scaffold_36-1575043694:455612..455842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:454919..455039TCONS_00061659-exon-scaffold_36-1575043694:454919..455039Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:454275..454392TCONS_00061659-exon-scaffold_36-1575043694:454275..454392Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:454066..454107TCONS_00061659-exon-scaffold_36-1575043694:454066..454107Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:453233..453322TCONS_00061659-exon-scaffold_36-1575043694:453233..453322Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:452759..452842TCONS_00061659-exon-scaffold_36-1575043694:452759..452842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1575043694:451394..452035TCONS_00061659-exon-scaffold_36-1575043694:451394..452035Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:460689..460744TCONS_00061659-exon-scaffold_36-1510915933:460689..460744Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:460047..460163TCONS_00061659-exon-scaffold_36-1510915933:460047..460163Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:458403..458590TCONS_00061659-exon-scaffold_36-1510915933:458403..458590Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:458020..458243TCONS_00061659-exon-scaffold_36-1510915933:458020..458243Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:456902..456993TCONS_00061659-exon-scaffold_36-1510915933:456902..456993Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:455612..455842TCONS_00061659-exon-scaffold_36-1510915933:455612..455842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:454919..455039TCONS_00061659-exon-scaffold_36-1510915933:454919..455039Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:454275..454392TCONS_00061659-exon-scaffold_36-1510915933:454275..454392Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:454066..454107TCONS_00061659-exon-scaffold_36-1510915933:454066..454107Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:453233..453322TCONS_00061659-exon-scaffold_36-1510915933:453233..453322Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:452759..452842TCONS_00061659-exon-scaffold_36-1510915933:452759..452842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1510915933:451394..452035TCONS_00061659-exon-scaffold_36-1510915933:451394..452035Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:460689..460744TCONS_00061659-exon-scaffold_36-1491911889:460689..460744Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:460047..460163TCONS_00061659-exon-scaffold_36-1491911889:460047..460163Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:458403..458590TCONS_00061659-exon-scaffold_36-1491911889:458403..458590Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:458020..458243TCONS_00061659-exon-scaffold_36-1491911889:458020..458243Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:456902..456993TCONS_00061659-exon-scaffold_36-1491911889:456902..456993Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:455612..455842TCONS_00061659-exon-scaffold_36-1491911889:455612..455842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:454919..455039TCONS_00061659-exon-scaffold_36-1491911889:454919..455039Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:454275..454392TCONS_00061659-exon-scaffold_36-1491911889:454275..454392Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:454066..454107TCONS_00061659-exon-scaffold_36-1491911889:454066..454107Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:453233..453322TCONS_00061659-exon-scaffold_36-1491911889:453233..453322Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:452759..452842TCONS_00061659-exon-scaffold_36-1491911889:452759..452842Clytia hemisphaericaexon
TCONS_00061659-exon-scaffold_36-1491911889:451394..452035TCONS_00061659-exon-scaffold_36-1491911889:451394..452035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:451394..460744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.81487	3.28995	1.07169	1.22589	1.39002	0.791702	1.98609	0.142193	1.79883	1.56026	2.71916	1.35747	1.99359	3.16309	2.6758	3.43651	2.58415	2.44848	3.38016	3.01591	3.23762	2.65239	10.3418	3.32989	1.22742	1.55282	2.42489	3.4915	8.08776	6.17743
Blast
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BLAST of TCONS_00061659 vs. Swiss-Prot (Human)
Match: PI4KA (Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=4)

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 303/472 (64.19%), Postives = 376/472 (79.66%), Query Frame = 3 
Query:    3 PHPLTAQYAVRVLQSYSPSTMLFYIPQLVQALRYDQLGYVENYILWACKQSQLIAHQIIWNMKTNIFTDEDSKNKDPQIGDKLEKLIEMITSSLSGPALKFYEREFDFFNRVTNISGEIRPYPKGAERKKACQEALRKIQVLPGVYLPSNPEGTVTGIDYTSGIPMQSAAKAPFLARFQVRKCGIQELEDLNT---SDETDNLSDQNVEHGETYTLGCIFKVGDDVRQDMLALQVISLFKKIFDKVGVDLYLSPYRVVATSPGCGVIECVPDAKSRDQLGRQTEVDLFAYFKSTYGDERTLPFQEARENFIRSMAAYSVISFLLQIKDRHNGNIMINKDGFVIHIDFGFMFESSPGGNLGFEPDMKLTPDWVNLIGGNLDAPSFRWFMELCVRAYLAVRPYTEAFVSLVALMLDTGLPCFRGETLKRLRQRFAPTLTERQASEYMIQIIKDSYLNKRARAYDIIQLVQNEIP 1409
            PHPLTAQY V+VL+S+ P  +LFYIPQ+VQALRYD++GYV  YILWA  +SQL+AHQ IWNMKTNI+ DE+   KDP IGD L++L+E IT SLSGPA  FY+REFDFFN++TN+S  I+PYPKG ERKKAC  AL +++V PG YLPSNPE  V  IDY SG PMQSAAKAP+LA+F+V++CG+ ELE       SD  D  S Q  +  +      IFKVGDD RQDMLALQ+I LFK IF  VG+DL++ PYRVVAT+PGCGVIEC+PD  SRDQLGRQT+  ++ YF   YGDE TL FQ+AR NFIRSMAAYS++ FLLQIKDRHNGNIM++K G +IHIDFGFMFESSPGGNLG+EPD+KLT + V ++GG ++A  F+WFME+CVR YLAVRPY +A VSLV LMLDTGLPCFRG+T+K L+ RF+P +TER+A+ +++++I+  +L+ R+R YD+IQ  QN+IP
Sbjct: 1630 PHPLTAQYGVKVLRSFPPDAILFYIPQIVQALRYDKMGYVREYILWAASKSQLLAHQFIWNMKTNIYLDEEGHQKDPDIGDLLDQLVEEITGSLSGPAKDFYQREFDFFNKITNVSAIIKPYPKGDERKKACLSALSEVKVQPGCYLPSNPEAIVLDIDYKSGTPMQSAAKAPYLAKFKVKRCGVSELEKEGLRCRSDSEDECSTQEADGQKISWQAAIFKVGDDCRQDMLALQIIDLFKNIFQLVGLDLFVFPYRVVATAPGCGVIECIPDCTSRDQLGRQTDFGMYDYFTRQYGDESTLAFQQARYNFIRSMAAYSLLLFLLQIKDRHNGNIMLDKKGHIIHIDFGFMFESSPGGNLGWEPDIKLTDEMVMIMGGKMEATPFKWFMEMCVRGYLAVRPYMDAVVSLVTLMLDTGLPCFRGQTIKLLKHRFSPNMTEREAANFIMKVIQSCFLSNRSRTYDMIQYYQNDIP 2101
The following BLAST results are available for this feature:
BLAST of TCONS_00061659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PI4KA0.000e+064.19Phosphatidylinositol 4-kinase alpha OS=Homo sapien... [more]
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