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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061638 ID=TCONS_00061638|Name=TCONS_00061638|organism=Clytia hemisphaerica|type=transcript|length=813bp
TTTTGGTAAAGTAAtactttttttcagatttttccatATCGTGAATTTTC
TTGTTATTAGGTTTTCTCATCGATTGCCAATATACCTCTCTTTTAAGTGC
GTTTATTTTTATTCCAGTTCGTAACGATTATACCAGTTTTACGCAATCat
atatgaaATAATACTGAGCAATCAAAACATTAATCGTAATCAAGCATCAG
AGCTTAGTAGataaatcaacaaaatcaacaCAAACATAAACGCAAACACC
ATCAAGCAAAGTACATCGAAAGTTTTAGCGCAGATAACAAGCtcactttt
gatgattttctcaatttcttcttcACGAGCTTTATCTTCAGCCATTTTGA
TGCTCTTCTTCATCAGCTTCGTTGACGTACTTTCCTTTTCGAAGTCAGAC
TTGTCGATATGACTCAATCCTGTAAAACGGACTAcgtttttgtttgcagc
aacgTCTTCAATTCCATCGTCTTCATAAGGCCCATTACCGTTCGCATATT
TTCTTGCAGTGCACCGTCCATTGGCGTTTGCGAATTTCTCATCCCGTTTA
CGTACCCCGAGATAGATTGCAAGCCGATTATAGACTATTGCCCGAGTCCA
CTTTCCAATACGGTTTTCAGCATTTGGCTCTTTGAAATGTAGGTTCAGTG
TATAACACATAGCAAATACCATTAAGACCATTTCAATCATAAcacaagtg
aaaaatattccaagcATTGGAACTATTTCCGAATTAGCAGGAATCATATC
TGCAACAATCAACATGAAGACTGTCAATGCCAACATCAGAGTGACAGCAA
AGGAGATTCGTTC Run BLAST on NCBI transcript from alignment at scaffold_36:1500831..1504478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061638 ID=TCONS_00061638|Name=TCONS_00061638|organism=Clytia hemisphaerica|type=transcript|length=3648bp|location=Sequence derived from alignment at scaffold_36:1500831..1504478+ (Clytia hemisphaerica)
TTTTGGTAAAGTAAtactttttttcagatttttccatATCGTGAATTTTC
TTGTTATTAGGTTTTCTCATCGATTGCCAATATACCTCTCTTTTAAGTGC
GTTTATTTTTATTCCAGTTCGTAACGATTATACCAGTTTTACGCAATCat
atatgaaattttttttttNCCACTTCCAACGGTCGAAAACATAATATTTG
ACGTCATCGACGAAAAGATGGTGTATGAAGCAGCGAAGATCACACGTGGT
GGTTCGGGTCCATCTGGAATGGATGCTGATGGGTGGAGACCAATCCTAAT
GTCTCGCGACTATGGAGATGCTGGCTCCGATCTCAGAAAAGCGATTGCTG
AGCTGATCAAGACGATTTGCATCAAAGAAGTCGACGAAACATCATTGTCA
CCATTGATGGCATCAAGACTAGTCCCGCTTGACAAAAATCCGGGCCTACG
ATCCATTTGGAGTCGGAGAGGTCCTGAGGCGAATTATGGGGAAGGTTGTC
ATGTCAGCTTTCTCCAAAGACGTCGTCAAAGCAACCAACAAAGCGCAGAT
GTGCGGGCGTCAATCGGGAAGTGAAGCTGCAATACATNAGGCAAGATGTG
GACGATGTGGTAAGAGCTATCGATCAAACAGGGGTGTACTTCAACATCTA
CGATTCTGCAATGGCGCGGTTCAACGACCACACGATGTCAGACAACCTAC
AGCTGCACCGCAACCCCCAGTTGCTCCGATACCACCACTGCTACAAAATG
AAATCCGACAGCAACAAGACACTCCAGATGTTCCTGTTCAACAATTCTTT
TTGGGCCCGACTCCAGGGGAAGAGGCGATAGTCTACCTGAAAAACTGCta
cgaaaagattttttttNTGCTGATGGCGATTGCCGACAAACACAACAAGA
TGGTGGGTTTTGCAGACGATATCACCGCAGCAGGAGACATCCAGTCACTC
AAACAATGGTGGGACCTTCTCCTTGAAATTGGCCCTGCATACGGATACTT
CCCGCAACCATCGAAATCTTGGCTGATAGTAAAAGAAACCAAGCTCACCG
AAGAAACCGAAGTATTCGTAGGTACACAGATTCAGATCTCCACTGAAGGT
GAACGTCATCTAGGCGCGGTCATTGGGACAGACGAAAACAAACGAAACTA
CATCAACGAAAAGATCAGCAAGTGGAAGGATGAAATCATCCTCCTTGCTG
ACATAGCCGCCACGTATTCTCAATCGGCATATGCTGCTTACGTTACAAGC
TATCAAAACAAGCTGACGTATTTCCTGAGAACGATTCCGGGTATATCCGA
AGAAATCAAGCAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGTACGGAGAACGCGTTCGACAATCCGAAAA
TGGAACATTCACACCAATCGTTTTCGCGGCTAACGGTGCAATGGGCGTGG
AATGCATTCGTTTCTATCAATGACTATCCGAGTTGTTGGCCGACAAGCGA
AAGGTTTCTCAGTCAATCGTGACGAATAAATTGAGAACATTGATTTGCTT
TTCACTTTTGCGTTCAACCGTAAGGTGTTTACGTGGAtcacggggaaaaa
tattcaccccagaaaacattttatagattattattttactttttatcttt
cGAGTCTTTTCAGTTTCTTGTCGTTCTGGTCTTTTCaggttgttttttgt
gtgtgtgGCCCACTTTTTGGGGTTTTTTTTTATAGTGCAATATATATAAA
AGTGTAAATAGAAACAACAGTACGGGTAACCACCCAGGAAAATTTAATTG
TATATATCTTCTTTTGTGATTAGttaaaataattatcataataataaatt
ttatcttaaaaaaaaaaaaaaaaaaaaaaaatcatatatgACATAATACT
GAGCAATCAAAACATTAATCGTAATCAAGCATCAGAGCTTAGTAGataaa
tcaacaaaatcaacaCAAACATAAACGCAAACACCATCAAGCAAAGTACA
TCGAAAGTTTTAGCGCAGATAACAAGCtcacttttgatgattttctcaat
ttcttcttcACGAGCTTTATCTTCAGCCATTTTGATGCTCTTCTTCATCA
GCTTCGTTGACGTACTTTCCTTTTCGAAGTCAGACTTGTCGATATGACTC
AATCCTGTAAAACGGACTAcgtttttgtttgcagcaacgTCTTCAATTCC
ATCGTCTTCATAAGGCCCATTACCGTTCGCATATTTTCTTGCAGTGCACC
GTCCATTGGCGTTTGCGAATTTCTCATCCCGTTTACGTACCCCGAGATAG
ATTGCAAGCCGATTATAGACTATTGCCCGAGTCCACTTTCCAATACGGTT
TTCAGCATTTGGCTCTTTGAAATGTAGGTTCAGTGTATAACACATAGCAA
ATACCATTAAGACCATTTCAATCATAAcacaagtgaaaaatattccaagc
ATTGGAACTATTTCCGAATTAGCAGGAATCATATCTGCAACAATCAACAT
GAAGACTGTCAATGCCAACATCAGAGTGACAGCAAAGGAGATTCGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061638-exon-scaffold_36-1491911889:1500831..1500987 | TCONS_00061638-exon-scaffold_36-1491911889:1500831..1500987 | Clytia hemisphaerica | exon |
| TCONS_00061638-exon-scaffold_36-1510915933:1500831..1500987 | TCONS_00061638-exon-scaffold_36-1510915933:1500831..1500987 | Clytia hemisphaerica | exon |
| TCONS_00061638-exon-scaffold_36-1575043694:1500831..1500987 | TCONS_00061638-exon-scaffold_36-1575043694:1500831..1500987 | Clytia hemisphaerica | exon |
| TCONS_00061638-exon-scaffold_36-1491911889:1503823..1504478 | TCONS_00061638-exon-scaffold_36-1491911889:1503823..1504478 | Clytia hemisphaerica | exon |
| TCONS_00061638-exon-scaffold_36-1510915933:1503823..1504478 | TCONS_00061638-exon-scaffold_36-1510915933:1503823..1504478 | Clytia hemisphaerica | exon |
| TCONS_00061638-exon-scaffold_36-1575043694:1503823..1504478 | TCONS_00061638-exon-scaffold_36-1575043694:1503823..1504478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1500831..1504478 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006029 | Neurotrans-gated_channel_TM |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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