TCONS_00061626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061626
Unique NameTCONS_00061626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061626 ID=TCONS_00061626|Name=TCONS_00061626|organism=Clytia hemisphaerica|type=transcript|length=479bp
CACTTTCTTAACCCAACAacacttttgtatttttcagtgTAAAAAAACAC
ACTatatattcaaataaaaaaaataaacaaaatgtcATCCAGCTTACGTC
AAGAATACACCCAATCTTCCAGCGCATCCAATAGCGTCAAAAATATGCAA
AAGATCTACCAGTCTGGTCCAGACCCCGTTCACATCAAGACACTCGCCGA
CAAGAAAATGTTCAGattcttGATGCCAGCAACTTACATCTCAATTGCTG
GTACTTTTGGTGTTTTCATGTACATGGCTCTCGGAAAAATGAAGCGTGCT
CCACAAAATTAAAACGATGAAATTTGTTATTTGTGTGTAGTATTCAACAA
TGTTATTTCTAATGTCATTTTGTAAAGTTATTTTAACAATGTACCATCGC
TGAATGTTTGAAGTCGAATAAATATGTTATTACAAAATTGCACGTTAgat
atttttgtcagaaaattaGCATAACCATA
Run BLAST on NCBI

transcript from alignment at scaffold_36:1202152..1203693+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061626 ID=TCONS_00061626|Name=TCONS_00061626|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at scaffold_36:1202152..1203693+ (Clytia hemisphaerica)
CACTTTCTTAACCCAACAacacttttgtatttttcagtgTAAAAAAACAC
ACTatatattcaaataaaaaaaataaacaaaatgtcATCCAGCTTACGTC
AAGAATACACCCAATCTTCCAGCGCATCCAATAGCGTCAAAAATATGCAA
AAGATCTACCAGGTAAGAtagtattttctcctttgtttttgtatttttaa
tacTCTATGAACCCCTTTCGCTGCTGTATgagtatttccaaaggaaattT
CATCAAAGTGTATGTTTAATACTTTGTACTAAGGTCTGTCTCAAATGTAT
ACGGACActttactttttgacatttatCAGCGTGTATTAAAAAGCTGTCa
cccgttgaaaagatatttccaaggagaatgataaaaaaagataataattt
CTTcaagaatgaaaaatgaagatgataaAGGTAAAATGAAGATTTCTTCT
ACGGGCTCAAAAAGCATGACATAGGTTTCTTACAGCATTTGAACTTTGCT
GACTTCAAATGTGTGTTCAGATCTTTTGTATTATTGTTGGATAAAAAGTT
AAGCTATTTGAATTAGGTCTTCTAAAACCGGTAAAAATGACCAAAACAGC
AAAAATTACCTTATTTACAGTGCTGTAAGCTGTTTATCTAAGATAGACAC
GAAAAAGCAGTTGGAAATCAGCAAGGttcaaaaattcttaaaaaatccGT
CATGATAATATTTGAAactattaatttttttcatctttatccttcgtttt
catttttcaagctttcaaataattttaatatttgAGATTAATCTCCTTTG
AAGTATCTTTCCAActgtgtattttttttaaatatagcaATTTCATGGGT
ACTGTATTGGCAAATTGTATAAAATGTAAAGTGTCCCATATACTTTTGAG
GCCGGCTATAATTATGTTCATGATTTAATTGAGCGTCGTTGCTTTCTTGT
TAGTCTGGTCCAGACCCCGTTCACATCAAGACACTCGCCGACAAGAAAAT
GTTCAGGTAGATTTAAATTTATTGATTTAATCTGGAAAGATTCTTCGTCG
CAGACTGGTACACTTGATTGGCACCTCGTTGAATTTTTATGTTCCTTCTT
CCAAGCTGGTTCTGTCccttttattcttatttttgggCGGTCTAGGGTAA
TGGACATCAACGTCGTCGAGGGACTCCACTCCACTTTACAATTTTTTGTG
GAGTCAATTGTTGAACTTAAAACTGCTACAAGCGTTGGTGGCATagtttc
attttaaaatttccttttatttttttagattcttGATGCCAGCAACTTAC
ATCTCAATTGCTGGTACTTTTGGTGTTTTCATGTACATGGCTCTCGGAAA
AATGAAGCGTGCTCCACAAAATTAAAACGATGAAATTTGTTATTTGTGTG
TAGTATTCAACAATGTTATTTCTAATGTCATTTTGTAAAGTTATTTTAAC
AATGTACCATCGCTGAATGTTTGAAGTCGAATAAATATGTTATTACAAAA
TTGCACGTTAgatatttttgtcagaaaattaGCATAACCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038654XLOC_038654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061626-exon-scaffold_36-1491911889:1202152..1202313TCONS_00061626-exon-scaffold_36-1491911889:1202152..1202313Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1510915933:1202152..1202313TCONS_00061626-exon-scaffold_36-1510915933:1202152..1202313Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1575043694:1202152..1202313TCONS_00061626-exon-scaffold_36-1575043694:1202152..1202313Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1491911889:1203105..1203157TCONS_00061626-exon-scaffold_36-1491911889:1203105..1203157Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1510915933:1203105..1203157TCONS_00061626-exon-scaffold_36-1510915933:1203105..1203157Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1575043694:1203105..1203157TCONS_00061626-exon-scaffold_36-1575043694:1203105..1203157Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1491911889:1203430..1203693TCONS_00061626-exon-scaffold_36-1491911889:1203430..1203693Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1510915933:1203430..1203693TCONS_00061626-exon-scaffold_36-1510915933:1203430..1203693Clytia hemisphaericaexon
TCONS_00061626-exon-scaffold_36-1575043694:1203430..1203693TCONS_00061626-exon-scaffold_36-1575043694:1203430..1203693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1202152..1203693 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
244.534	240.509	325.821	335.067	140.519	110.76	163.359	158.312	298.3	242.488	289.547	365.884	255.352	281.521	332.176	331.574	379.471	397.034	211.336	166.044	338.826	319.381	249.492	244.631	251.682	239.981	325.935	274.201	244.724	231.801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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