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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061602 ID=TCONS_00061602|Name=TCONS_00061602|organism=Clytia hemisphaerica|type=transcript|length=1003bp
CACAAGCATCATGTTGGCAATCTATATTCTAGCCGTTGCTTTGGTGACGA
TCCAAGTGCAAGCCAGTGCTAATAATCCTTTCACCtatgaagaaaatttg
aaagctGttGATGCATACTTTTGTAAGGGAAAATCTGGCAATTATCGTCA
TCCAAATGGAGCCTGTGATCACTACATTGCCTGCGGTGTTGGAtgtaaaa
atgctaaaaacagACGATCCTACAAACGTCTTTGTACACAAAACATCATG
CCGTGTCCTGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATATGG
AGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTTCAAGGAGAAG
TTTGCTATGGATCCACTCAAGAGTCATATGGCACTTACACTCATCAATGT
ACTGGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGG
ATGTTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTCCACACGCCC
CACCAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTtcaaatac
gtcaaaaaatcaTACTACGACATTAAACATGACGTTAAATTTCCCGAACC
ATTCACTGCTTACGACGCCAATAAATACGGATTCTATTATTTGAACGGAT
TCCATGACAAATCATCCTTCATCTATTTCACTGCAGAACATAATGATTAT
TATACCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGA
TTTGTTTGATCAAGGAGTCGGAAACAATGTAGGCAAACATTGCGTTTACG
TCTACGCATCGTTCTACAAATACTACAAACctaatcaagttatcaaattt
taagtttaataattgatttactgaaattttttaacaaaaccGATATTTTT
TTTAACCCAAATACTTTCTaaaactttgtatgttttattttgaatctttt
agatttttttaaaatctttaaaatcttttatatttctattgtcataatac
aaa Run BLAST on NCBI transcript from alignment at scaffold_36:932532..934881+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061602 ID=TCONS_00061602|Name=TCONS_00061602|organism=Clytia hemisphaerica|type=transcript|length=2350bp|location=Sequence derived from alignment at scaffold_36:932532..934881+ (Clytia hemisphaerica)
CACAAGCATCATGTTGGCAATCTATATTCTAGCCGTTGCTTTGGGTAAGT
GCTTTATCAAGCCTTAAACAGGACATCTTTATCTCAGTACTCTGATAAAG
TTTTTAAAGACACTTCTTCCCACGTCCTTACTGGAAAGTTCTCTCAACAT
TTtatccccggtgggaaaattaCTCCACAATTTCAGCCCATTCTCATAcc
catttgaaaaaaaattccaatccCAAACCACCCTCACTAAGATTTttaat
ttaagaacaatagaatttccccattgagattttctACTGCGGGAAAAATT
CTCACCGGGGCTGTATGACAAAGGTTTTCTGTGGCATAAAGCTTAGACAA
TGCCGGGTGTAAAAATGTTATNAATTCTCACCGGGGCTGTATGACAAAGG
TTTTCTGTGGCATAAAGCTTAGACAATTCCGGGTGTAAAAATGTTATAAA
TCTTAAGTATATTTAGATTTTAGGTTTTAAATTCTATTTTCTACATTTTA
CATTGGATTTTTTTGagtgaaacaaaaatttctttgcAACCGAAAAAAAC
TTCCTATATTCTTGTGGATACGGTTGAATATTTGCCGTTTTGTATATCTA
ATTCCTTCTCTATGGTTGTAGTGACGATCCAAGTGCAAGCCAGTGCTAAT
AATCCTTTCACCtatgaagaaaatttgaaagctGGTAAGTAggaatttat
ttaatttgaattaAGTGAGGACAACAATGTTTAAGTTGTAGTCTCAAGGA
GAGTCTATGAAGTGTCAATTTGAGTGTTATTTGCTTTaatgggatatatt
tttgggaattaaatttcgcagatGGCTCGAACGTAGTAGCGtaggttgaa
aatatttgaagatcTTGTGCCTTTTTACACCAAATCATGCATCAGTTGtc
gaaatacgcattattagcgcttctttgataacagtaaacattcaaattgT
TATTCGGGACTTTCATCAAAACGATTTCGTGTTTGGGGTCAATTTCACGT
AAATAGCCGACGAAGTCGTATACTccttcttttattttgagttATTGAGA
AATTCATCATCACTATAATTCCcttctttttatattttagttGATGCATA
CTTTTGTAAGGGAAAATCTGGCAATTATCGTCATCCAAATGGAGCCTGTG
ATCACTACATTGCCTGCGGTGTTGGAtgtaaaaatgctaaaaacagACGA
TCCTACAAACGTCTTTGTACACAAAACATCATGCCGTGTCCTGGTGGTCT
TTTCTACGATGAGAAAGCTTATGGAGGATATGGAGCTTGTATTTATAAAG
CTGAATCTAACTGTCTTCAATTTCAAGGAGAAGTTTGCTATGGATCCACT
CAAGAGTCATAGTAAGTACTTGTTTCCGTCACAACTGGTGGCCATCTTAA
AATCATagccaaattttaagaaaataagaatatctATGCAGGtttaggga
aatatttaatgcCCATCCTTTGCAAGAGAACaagaacaaaatgtttttaa
tgaTGTGATAATACAATATCTAGAAATTCTGCTATTATTCGCTTATCACT
TAATTATCATTCTTTAAGAAGTNTATGTTTTGTCGACAAGCCTTCCATTG
AAACATTATTTTGTATTAACTTGAGGCTTATTAATTTCTGAATCTTCAAA
AGATTTCGTTTTCACCACCTTGGCGATGGCATTCAccagaaataaaagtt
gataTAAGTTTTGTTATTCTTACAGTGGCACTTACACTCATCAATGTACT
GGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGGATG
TTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTCCACACGCCCCAC
CAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTtcaaatacgtc
aaaaaatcaTACTACGACATTAAACATGACGTTAAATTTCCCGAACCATT
CACTGCTTACGACGCCAATAAATACGGATTCTATTATTTGAACGGATTCC
ATGACAAATCATCCTTCATCTATTTCACTGCAGAACATAATGATTATTAT
ACCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGATTT
GTTTGATCAAGGAGTCGGAAACAATGTAGGCAAACATTGCGTTTACGTCT
ACGCATCGTTCTACAAATACTACAAACctaatcaagttatcaaattttaa
gtttaataattgatttactgaaattttttaacaaaaccGATATTTTTTTT
AACCCAAATACTTTCTaaaactttgtatgttttattttgaatcttttaga
tttttttaaaatctttaaaatcttttatatttctattgtcataatacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061602-exon-scaffold_36-1491911889:932532..932575 | TCONS_00061602-exon-scaffold_36-1491911889:932532..932575 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1510915933:932532..932575 | TCONS_00061602-exon-scaffold_36-1510915933:932532..932575 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1575043694:932532..932575 | TCONS_00061602-exon-scaffold_36-1575043694:932532..932575 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1491911889:933153..933215 | TCONS_00061602-exon-scaffold_36-1491911889:933153..933215 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1510915933:933153..933215 | TCONS_00061602-exon-scaffold_36-1510915933:933153..933215 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1575043694:933153..933215 | TCONS_00061602-exon-scaffold_36-1575043694:933153..933215 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1491911889:933622..933892 | TCONS_00061602-exon-scaffold_36-1491911889:933622..933892 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1510915933:933622..933892 | TCONS_00061602-exon-scaffold_36-1510915933:933622..933892 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1575043694:933622..933892 | TCONS_00061602-exon-scaffold_36-1575043694:933622..933892 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1491911889:934257..934881 | TCONS_00061602-exon-scaffold_36-1491911889:934257..934881 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1510915933:934257..934881 | TCONS_00061602-exon-scaffold_36-1510915933:934257..934881 | Clytia hemisphaerica | exon |
| TCONS_00061602-exon-scaffold_36-1575043694:934257..934881 | TCONS_00061602-exon-scaffold_36-1575043694:934257..934881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:932532..934881 + |
Blast
The following BLAST results are available for this feature:
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