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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061589 ID=TCONS_00061589|Name=TCONS_00061589|organism=Clytia hemisphaerica|type=transcript|length=3648bpRun BLAST on NCBI protein sequence of TCONS_00061589-protein >TCONS_00061589-protein ID=TCONS_00061589-protein|Name=TCONS_00061589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1102bp MAAASTSSEKLNSCVKTDVFLSHDWGEDGITNHKKVEKINEAIKGLGYVTRun BLAST on NCBI transcript from alignment at scaffold_36:853110..858665+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061589 ID=TCONS_00061589|Name=TCONS_00061589|organism=Clytia hemisphaerica|type=transcript|length=5556bp|location=Sequence derived from alignment at scaffold_36:853110..858665+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:853110..858665+ >TCONS_00061589 ID=TCONS_00061589|Name=TCONS_00061589|organism=Clytia hemisphaerica|type=CDS|length=6618bp|location=Sequence derived from alignment at scaffold_36:853110..858665+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061589 vs. Swiss-Prot (Human)
Match: KLC4 (Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 1.237e-19 Identity = 59/205 (28.78%), Postives = 92/205 (44.88%), Query Frame = 1
Query: 2680 LNTRYWLAFCYHQQNDYQKAIPIFQHVADKQSSTLGKNHKDTLNTRHMLAFCYHQQNDYQKAIPIFQDVADKQTSTIGENHEDTLNTRYWSARCYFKQNDYQKAIPIFQDVAEKQTSTLGENDADTLNTRHMLARCCYKQN-------YYQKAIPIFQDVAEKQSSTLGENDKNTLNTRYWLAGCYFKQNDYQKAILILEDVFRR 3273
L T + L Y Q Y+ A+P+ + + T G+ H D ++LA Y QN Y++A + D + ST+G +H T A Y K+ Y++A P+ Q E + LG N D + LA C Q YYQ+A+ I++ LG ++ N T+ LA CY KQ Y +A + +++ R
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYE-------GQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 408 HSP 2 Score: 87.4261 bits (215), Expect = 2.211e-17 Identity = 51/195 (26.15%), Postives = 84/195 (43.08%), Query Frame = 1
Query: 2428 LNTRHMLAFCYHQQNDYQKSIPIFQHVANKQSSTLGKNHKDTLNTRYWLAFCYYEQNDYQKAIPIFQHVADKQSSTLGKNHKDTLNTRYWLAFCYHQQNDYQKAIPIFQHVADKQSSTLGKNHKDTLNTRHMLAFCYHQQNDYQKAIPIFQDVADKQTSTIGENHEDTLNTRYWSARCYFKQNDYQKAIPIFQDV 3012
L T H L Y Q Y+ ++P+ + T G+ H D LA Y +QN Y++A + + STLG +H T LA Y ++ Y++A P+ Q + + LG NH D + LA Q Y+ +Q +G ++ + T+ A CY KQ Y +A +++++
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405 HSP 3 Score: 86.2705 bits (212), Expect = 5.195e-17 Identity = 50/195 (25.64%), Postives = 88/195 (45.13%), Query Frame = 1
Query: 2302 LNTRYWLAFCHYQQNDYKKAIPIFQHVADKQSSTLGKNHKDTLNTRHMLAFCYHQQNDYQKSIPIFQHVANKQSSTLGKNHKDTLNTRYWLAFCYYEQNDYQKAIPIFQHVADKQSSTLGKNHKDTLNTRYWLAFCYHQQNDYQKAIPIFQHVADKQSSTLGKNHKDTLNTRHMLAFCYHQQNDYQKAIPIFQDV 2886
L T + L + Q Y+ A+P+ + + T G+ H D ++LA Y QN Y+++ + + + STLG +H T LA Y ++ Y++A P+ Q + + LG NH D LA Q Y+ +Q LG ++ + T++ LA CY +Q Y +A +++++
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405 HSP 4 Score: 83.9593 bits (206), Expect = 2.770e-16 Identity = 56/195 (28.72%), Postives = 88/195 (45.13%), Query Frame = 1
Query: 916 LNTRYCLALCYYEQNDYQKAIPIFQDVADKRTSTLGENHEDTLNTRYCLALCYYEQNDYQKAIPIFQDVADKRTSTLGENEADTLDTRYWLALRHYQQNDYKKAIPIFQDVAEKQSSTLGENHEDTLNTRYWLALRHYQQNDYKKAIPIFQDVAEKQSSTLGENHEDTLNTRYWLAFCYHQQNDYQKAIPIFQDV 1500
L T + L + Y Q Y+ A+P+ + + T G H D LAL Y +QN Y++A + D R STLG + T LA+ + ++ YK+A P+ Q E + LG NH D LAL Q Y+ +Q LG ++ + T+ LA CY +Q Y +A +++++
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405 HSP 5 Score: 83.5741 bits (205), Expect = 3.526e-16 Identity = 54/195 (27.69%), Postives = 85/195 (43.59%), Query Frame = 1
Query: 1798 LDTRYWLALCHYQQNDYKKAIPIFQDVAEKQSSTLGENHEDTLNTRYWLAFCYHQQNDYQKAIPIFQDVADKRTSTLGENHEDTLNTRYCLALSYFKQNDYQKAIPIFQDVADKRTSTIGENHEDTLNTRYWLARCYYQQNDYQKSIPIFQHVADKQSSTLGENHKDTLNTRYWLAFCHYQQNDYKKAIPIFQHV 2382
L T + L + + Q Y+ A+P+ + E T G H D LA Y QN Y++A + D R STLG +H T LA+ Y K+ Y++A P+ Q + R +G NH D LA Q Y+ +Q LG ++ + T+ LA C+ +Q Y +A +++ +
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405 HSP 6 Score: 82.4185 bits (202), Expect = 6.560e-16 Identity = 51/195 (26.15%), Postives = 84/195 (43.08%), Query Frame = 1
Query: 2050 LNTRYCLALSYFKQNDYQKAIPIFQDVADKRTSTIGENHEDTLNTRYWLARCYYQQNDYQKSIPIFQHVADKQSSTLGENHKDTLNTRYWLAFCHYQQNDYKKAIPIFQHVADKQSSTLGKNHKDTLNTRHMLAFCYHQQNDYQKSIPIFQHVANKQSSTLGKNHKDTLNTRYWLAFCYYEQNDYQKAIPIFQHV 2634
L T + L + Y Q Y+ A+P+ + + T G H D LA Y QN Y+++ + + STLG +H T LA + ++ YK+A P+ Q + + LG NH D + LA Q Y+ +Q LG ++ + T+ LA CY +Q Y +A +++ +
Sbjct: 211 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEI 405 The following BLAST results are available for this feature:
BLAST of TCONS_00061589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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