TCONS_00061565 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061565
Unique Name	TCONS_00061565
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	608

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_36:542052..546487+

transcript sequence

>TCONS_00061565 ID=TCONS_00061565|Name=TCONS_00061565|organism=Clytia hemisphaerica|type=transcript|length=608bp
GcgaaatataaacaaaagttGGGGTTCAAAATAATATTCGTACGTTTCTT
AGGGTTAAAATAAAGTCTTTCTCCCATTTTTTACATATATTTACAAATAA
GACTAAGAGTCTTCAATTTGAATATGTTCAGTACCGTCCTTTGCTAGGGC
ATTCCCACGCGTGTCCGAGCGCGGAAGTACGTCACTTTCaagaatattca
aaaattgcaatggATAGTGTAGTAAGCCAACCCCTGaataaaaataaact
attttatAAGTTATTTTATATGAATAAACTGGAAAATAAATCTCCTACTG
TGAAGAATCTAGTACATGACaattctgaattttcaaaagatacaaacaaa
atttctcAGTCAGATGTTGATATTTTCAACCATGGATGATGGTGAAGGCC
ATTAAAGTTCAATTGTTTAAAGGAATCATACCATTACGCTGCTCATCATG
GTATTGTTCATATCATCCGCACGCAGATGGACTACTTTGATATTCAATAA
ATACATTTAAACAATAATTACATACCATGTGACTTTAAAGCGTGCGATGG
CTGTGTTGCTGGGTATTCTTTTCATCTAATGGAGTCTCACtcaacttttg
atctaaaa

Run BLAST on NCBI

transcript from alignment at scaffold_36:542052..546487+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061565 ID=TCONS_00061565|Name=TCONS_00061565|organism=Clytia hemisphaerica|type=transcript|length=4436bp|location=Sequence derived from alignment at scaffold_36:542052..546487+ (Clytia hemisphaerica)
GcgaaatataaacaaaagttGGGGTTCAAAATAATATTCGTACGTTTCTT
AGGGTTAAAATAAAGTCTTTCTCCCATTTTTTACATATATTTACAAATAA
GACTAAGAGTCTTCAATTTGAATATGTTCAGTACCGTCCTTTGCTAGGGC
ATTCCCACGCGTGTCCGAGCGCGGAAGTACGTCACTTTCaagaatattca
aaaattgcaatggATAGTGTAGTAAGCCAACCCCTGaataaaaataaact
attttatAAGTTATTTTATATGAATAAACTGGAAAATAAATCTCCTACTG
TGAAGAATCTAGTACATGACaattctgaattttcaaaagNNNNNNNNNNN
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NNNNNNNNNNNNNTGCTGGGTATTCTTTTCATCTAATGGAGTCTCACTCg
acttttgatctaaaaagtCATGAAAGATATTCAATAAATACATTTAAACA
ATAATTACATACCATGTGACTTTAAAGCGTGCCATGGCTGTGTTGCTGGG
TACTCTTTTCATCTAATGGAGTCTCACTCgacttttgatctaaaaagtCA
TGAAAGATACTCAATAAATACATTTAAACAATAATTATATACCATGTGAC
TTTAAAGCGTGCGATGGCTGTGTTGCTGGGTATTCTTTTCATCTAATGGA
GTCTCACTCGACTTGTGATCTAAAAAGTCATGAAAGATATTCAATAAATA
CATTTAAACAATAATTACATACCATGTGACTTTTAAGCGTGCCATGGCTG
TGTTGCTGGGTATTCTTTTCATCTAATTGAGTCTCACTCGACATTTGATC
TAAAAAGTCGCATGAAAGATACTCCATTAGTTAcattaaagaaaataatc
acAAAAGGAAGGATACAATTATAGGAGATACCTAGTTTAAATCTGTATTC
AGCAAGAAAAGTCCAAAAGTTACTAATTGTCATCAAATCNGTACCTAGTT
TAAATCCGTATTCAGCAAGAAAAGTTCAAAAGTTACTAATTGTCATCAAA
TctgataaaatataaaaatgttgcGAAATTCTCTAAATCTGCACTGTAAA
AACTTGAGTctttattttcagaaaaaaaacaactcgTAATGAGAAATGTT
TCGCTTGTGGAAAATAAATCTCCTACTGTGAAGAATCTAGTACATGACaa
ttctgaattttcaaaagatacaaacaaaatttctcAGTCAGATGTTGATA
TTTTCAACCATGGATGATGGTGAAGGCCATTAAAGTTCAATTGTTTAAAG
GAATCATACCATTACGCTGCTCATCATGGTATTGTTCATATCATCCGCAC
GCAGATGGACTACTTTGATATTCAATAAATACATTTAAACAATAATTACA
TACCATGTGACTTTAAAGCGTGCGATGGCTGTGTTGCTGGGTATTCTTTT
CATCTAATGGAGTCTCACtcaacttttgatctaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038630	XLOC_038630	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061565-exon-scaffold_36-1491911889:542052..542366	TCONS_00061565-exon-scaffold_36-1491911889:542052..542366	Clytia hemisphaerica	exon
TCONS_00061565-exon-scaffold_36-1510915933:542052..542366	TCONS_00061565-exon-scaffold_36-1510915933:542052..542366	Clytia hemisphaerica	exon
TCONS_00061565-exon-scaffold_36-1575043694:542052..542366	TCONS_00061565-exon-scaffold_36-1575043694:542052..542366	Clytia hemisphaerica	exon
TCONS_00061565-exon-scaffold_36-1491911889:546195..546487	TCONS_00061565-exon-scaffold_36-1491911889:546195..546487	Clytia hemisphaerica	exon
TCONS_00061565-exon-scaffold_36-1510915933:546195..546487	TCONS_00061565-exon-scaffold_36-1510915933:546195..546487	Clytia hemisphaerica	exon
TCONS_00061565-exon-scaffold_36-1575043694:546195..546487	TCONS_00061565-exon-scaffold_36-1575043694:546195..546487	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:542052..546487 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.424108	0.629642	0.134772	3.05342	2.58306	1.32974	0.991561	0.403331	0.185622	1.32921	0.532962	0.236543	0.277208	0.231034	0.0708104	0.734243	0.136832	0.283561	0.644803	1.3778	0.64662	0.2039	0.455047	1.39456	1.54582	0.782932	0.910832	0	0.333556

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00061565 vs. Swiss-Prot (Human)

BLAST of TCONS_00061565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00061565 (transcript) - C. hemisphaerica