|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061561 ID=TCONS_00061561|Name=TCONS_00061561|organism=Clytia hemisphaerica|type=transcript|length=4198bpRun BLAST on NCBI protein sequence of TCONS_00061561-protein >TCONS_00061561-protein ID=TCONS_00061561-protein|Name=TCONS_00061561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MKGTKTLLSYLLFIIGLQWKTVYALPPTCNEHEFMCELDKRCLNGAWKCDRun BLAST on NCBI transcript from alignment at scaffold_36:320396..330248+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061561 ID=TCONS_00061561|Name=TCONS_00061561|organism=Clytia hemisphaerica|type=transcript|length=9853bp|location=Sequence derived from alignment at scaffold_36:320396..330248+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:320396..330248+ >TCONS_00061561 ID=TCONS_00061561|Name=TCONS_00061561|organism=Clytia hemisphaerica|type=CDS|length=14769bp|location=Sequence derived from alignment at scaffold_36:320396..330248+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061561 vs. Swiss-Prot (Human)
Match: LRP1 (Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2) HSP 1 Score: 251.136 bits (640), Expect = 1.536e-100 Identity = 188/570 (32.98%), Postives = 264/570 (46.32%), Query Frame = 3
Query: 258 TCNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDEENCPAKTCPPNKFKCG-NGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGE---------------------------------------GDDSDERNCEKKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEAGCGKTTAPPKGIEKKALKSIKTNHPINSTKQLXXXXXXXXXXXXMAPCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETCSANEC-ANDEFRCSNGK-CIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCH---KGTFQCRNSTKCIDFSMVCNNVPNCPMGDDED--------AKCGINECEIGNDGCHHDCVDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQKCLNTKGSYKCQCGKGYHLAPNKRSCKAEAPE-PFLVFANQYDVRSI-----STSGKDYRQISESKSASAVAVDIEDSMIYWTDTIEKTINRRKI 1790
C +F C RC+ G ++C+G+D+CGD DE +CP TC PN+F+C RCIP W CD +DC D +DE +C C D F+C+ + +CI CDG +DCG+ GD+SDE +C + C+ EF C NG CI WKCDG DC DGSDE +C + C DQF+C SGHCI RCD ++C+D SDE CG ++T C +F+C+ + C +W CDGE DC D DE E C+ C N FRC N + C+ ++CDGT++C DG+DE+DC H K F CRN +C+ S+ CN +C G DE+ C N G++ CV + C CR G+ C+D+++C FG CSQ C NTKG + C C + + N +CKAE E L A+ ++RS+ ++ + Q ES A+ V ++ +YWT+ TI+ R +
Sbjct: 3412 VCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPA---NC-TQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPR-CDMDQFQC-KSGHCIPLRWRCDADADCMDGSDEEACG--------------TGVRT-------------------------CPLDEFQCNNT-LCKPLAWKCDGEDDCGDNSDENPEECARFVCPPNRPFRCKNDRVCLWIGRQCDGTDNCGDGTDEEDCEPPTAHTTHCKDKKEFLCRNQ-RCLSSSLRCNMFDDCGDGSDEEDCSIDPKLTSCATNASICGDEA---RCVRTEKAAYCACRSGFHTVPGQPGCQDINECLRFGTCSQLCNNTKGGHLCSCARNFMKTHN--TCKAEGSEYQVLYIADDNEIRSLFPGHPHSAYEQAFQGDESVRIDAMDVHVKAGRVYWTNWHTGTISYRSL 3929 HSP 2 Score: 136.346 bits (342), Expect = 1.536e-100 Identity = 87/294 (29.59%), Postives = 142/294 (48.30%), Query Frame = 1
Query: 1837 NRRKINKDLSSTNSKPEVLVQNLTKPESLAVDWIHRKIYWIDTGKNELHVSNLDGSHSKLLIKGNDQIELRSLAVYPEKQYIYWADWGSEPKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVS-----GLTSPYGVAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYLYQPMDIRVFHPLLQTKYAHPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTCVSNIQTTATTLKTNPTVSSICEYKCHSSNKCILKSQ 2703
+RR+I++ ++ N + L P +A+DW+ +YW D+G++ + V+ + G + K LI G E ++ V P + +YW+DWG+ PKIE A + G R T++ ++++W + +AVD ER++W D I S ++G D IV+ GL+ P+ + VFEDY+Y ++FK KF S + L D+ ++H Q + +PC D C LC S C CP +L D TCV T C +C + C L ++
Sbjct: 3941 HRRQIDRGVTHLN------ISGLKMPRGIAIDWVAGNVYWTDSGRDVIEVAQMKGENRKTLISGMID-EPHAIVVDPLRGTMYWSDWGNHPKIETAAMDGTLRETLV-QDNIQWPTGLAVDYHNERLYWADAKLSVIGSIRLNGTDP--IVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLVNLTGGLSHASDVVLYHQHKQPEVTNPC---DRKKCEWLCL-LSPSGPVCTCPNGKRL--DNGTCVPVPSPTPPPDA---PRPGTCNLQCFNGGSCFLNAR 4215 HSP 3 Score: 256.529 bits (654), Expect = 1.269e-68 Identity = 199/528 (37.69%), Postives = 275/528 (52.08%), Query Frame = 3
Query: 297 RCLNGAWKCDGEDDCGDNSDEENCPAKTCPPNKFKCGNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDH--------FQ-CEKTKQCIFRYEHCDGHNDCGEGDDSDERNC---EKKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEAGC--GKTTAPPKGIEKKALKSIKTNHPINSTKQLXXXXXXXXXXXXM--APCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETCSANECANDEFRCSNGKCIDSIQ-KCDGTNHCSDGSDEKDCS---TNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDAK-CGINECEIGN-DGCHHDCVDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQKCLNTKGSYKCQCGKGYHLAP---NKRSCKAEA-PEPFLVFANQYDVRSISTSGKDYRQISES-KSASAVAVDIEDSMIYWTDTIEK--TINRRKIN 1793
RC++ C+G DDCGD SDE C C +F+C +G CI S C+ DC D +DE ++C T C S FQ CE+T C CDG NDCG D SDER+C ++ C + F C +G CI +W CD DC G DE +CN K C QF+C + CIS CDG +C D SDEA GKT P + + K + + + C D +F C ++ +CI K ++CD + DC D DE+ E C C EFRC+NG+C+ S Q +CDG N C D SDE + T+ E C+ + +S +C+ +++CN +C GD D + C INEC GC DC D IG++C+CR G++L DG++C D+D+C CSQ+C+NT GSYKC C +GY AP + SCKA EPFL+FAN+Y +R ++ G +Y + + +A A+ D + MIYWTD + I R +N
Sbjct: 2577 RCVSNMLWCNGADDCGDGSDEIPCNKTACGVGEFRCRDGTCIGNSSRCNQFVDCEDASDE----MNCSATD-CSSYFRLGVKGVLFQPCERTSLCYAPSWVCDGANDCG--DYSDERDCPGVKRPRCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHCN-KFCSEAQFEC-QNHRCISKQWLCDGSDDCGDGSDEAAHCEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTCDDREFMC-QNRQCIPKHFVCDHDRDCADGSDESPE-CEYPTCGPSEFRCANGRCLSSRQWECDGENDCHDQSDEAPKNPHCTSQEHKCNASSQFLCSSGRCVAEALLCNGQDDC--GDSSDERGCHINECLSRKLSGCSQDCEDLKIGFKCRCRPGFRLKDDGRTCADVDECSTTFPCSQRCINTHGSYKCLCVEGY--APRGGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLN 3089 HSP 4 Score: 255.373 bits (651), Expect = 2.419e-68 Identity = 188/528 (35.61%), Postives = 261/528 (49.43%), Query Frame = 3
Query: 243 YALPPTCNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDEEN--CPAKTCPPNKFKCGNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNCEKKTC-ATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDE--AGC-GKTTAPPKGIEKKALKSIKTNHPINSTKQLXXXXXXXXXXXXMAPCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETCSANEC-ANDEFRCS-NGKCIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCHKGTFQCRNSTK-CIDFSMVCNNVPNCPMGDDEDAKCGINECEIGNDGCHHDC-VDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQKCLNTKGSYKCQCGKGYHLAPNKRSCKAEAP-EPFLVFANQYDVRSISTSGKDYRQISES-KSASAVAVDIEDSMIYWTDTIEKTINRRKI 1790
Y PP C EF C + RC+ WKCDG++DC DNSDE C TCP ++FKC N RCIP W CD +DCG++ DE+ C C + F C + +CI CD +DCG+ D + +C TC +F CNNG CI W+CD DC D SDE C++ +C + QFKC SG CI CDG ++C D SDE A C + T PP G CH +F+C G CI W CDG+ DC D DE + C + +F C + +CI CDG N C D SDE++C + + C + C N+T C+ +C+ +C G DE C ++C + N GC H+C V G C C LG +L D +C+ C + CSQKC K S KC C +G+ L P+ SC++ P +PF++F+N++++R I DY + ++ A+ + S +YWTD +E I R K+
Sbjct: 848 YVPPPQCQPGEFACA-NSRCIQERWKCDGDNDCLDNSDEAPALCHQHTCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESNA--TCSART-CPPNQFSC-ASGRCIPISWTCDLDDDCGDRSD-ESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCSH-SCSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGG------------------------------------CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGVTHVCDPSVKFGCKDSARCISKAWVCDGDNDCEDNSDEENCES---LACRPPSHPCANNTSVCLPPDKLCDGNDDCGDGSDEGELC--DQCSLNNGGCSHNCSVAPGEGIVCSCPLGMELGPDNHTCQIQSYCAKHLKCSQKCDQNKFSVKCSCYEGWVLEPDGESCRSLDPFKPFIIFSNRHEIRRIDLHKGDYSVLVPGLRNTIALDFHLSQSALYWTDVVEDKIYRGKL 1326 HSP 5 Score: 204.142 bits (518), Expect = 1.476e-52 Identity = 143/378 (37.83%), Postives = 195/378 (51.59%), Query Frame = 3
Query: 261 CNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDE-ENCPAKTCPPNKFKCGNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNCEKKTCATDEFQCN-NGHCITDTWKCDGSKDCTDGSDE-VNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEAGCGKTTAPPKGIEKKALKSIKTNHPINSTKQLXXXXXXXXXXXXMAPCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETCSANECANDEFRCSNGKCIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDA-KCGINECEI 1382
C +F+C+ DK C+ WKCD EDDCGD+SDE +CP C P +F+C G C ++ CD +DC DN+DE +H C F+C T +CI C+G ++CG+G+ DER+C + TCA ++FQC+ CI W CD DC DGSDE NC TC D+F+C SG CI A +CDG +C D SDE P + +++ C YQF+C K+ +C+ W CD + DC D DE E+C+ C+ EF C+NG+CI KCDG + C+DGSDEKDC+ C FQC+ S CI C+ +C G DE+A G+ C +
Sbjct: 3334 CTASQFVCKNDK-CIPFWWKCDTEDDCGDHSDEPPDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANCDIHV-----CLPSQFKCTNTNRCIPGIFRCNGQDNCGDGE--DERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDGSDE--------PKEECDERT-------------------------------CEPYQFRC-KNNRCVPGRWQCDYDNDCGDNSDE--ESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPR----CDMDQFQCK-SGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPL 3656 HSP 6 Score: 186.808 bits (473), Expect = 3.493e-47 Identity = 114/351 (32.48%), Postives = 174/351 (49.57%), Query Frame = 1
Query: 1807 YWTD-TIEKTINRRKINKDLSSTNSKPEVLVQ-NLTKPESLAVDWIHRKIYWIDTGKNELHVSNLDGSHSKLLIKGNDQIELRSLAVYPEKQYIYWADWGSEPKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVS-GLTSPYGVAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYLYQPMDIRVFHPLLQTKYA-HPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTCVSNIQTTATTLKTNPTV-------------------SSICEYKCH------SSNKCILKSQICDGKYQCPEHDDERQCGPKVVV 2772
YWTD T + ++ RR + S +VL + L+ P+ LAVDW+ +YW D G++ + VS L+G++ +L+ + E R+L V + Y+YW DWG I R + G R+ I+ + + W + + +D ERI+W D I + + G ++ ++S + + + +FEDYVYWTD K + +A K G+N S L++PMD+ VFH L Q HPC +NGGCS+LC + CACP F L SDG+TCVSN + K + + E+KC S+ C + ICDG C ++ DE C V +
Sbjct: 3072 YWTDVTTQGSMIRR-----MHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLR-EPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIVDTK-ITWPNGLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCK-VNNGGCSNLCLLSPGGGHKCACPTNFYLGSDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANCDIHVCL 3414 HSP 7 Score: 173.326 bits (438), Expect = 3.670e-43 Identity = 100/278 (35.97%), Postives = 149/278 (53.60%), Query Frame = 1
Query: 1789 LTRTCXYWTDTIEKTINRRKI--NKDLSSTNSKPEVLVQ-NLTKPESLAVDWIHRKIYWIDTGKNELHVSNLDGSHSKLLIKGNDQIELRSLAVYPEKQYIYWADW-GSEPKIERANLMGEERTTILSHEHVK-WTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVSG---LTSPYGVAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYLYQPMDIRVFHPLLQTKYAHPC-SDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTC 2595
L+++ YWTD +E I R K+ N L+S EV++Q L PE LAVDWI IYW+++ +++ V+ LDG+ L+ G D R++A+ P ++W DW S P+IE A++ G R T+ W + + VD +RI W+D S I S+ G E++ G L+ P+ V ++ VYWTD L KA+K+ G NV QP D++V+HP Q +PC ++ G CSHLC ++ +CACP+ KL D TC
Sbjct: 1306 LSQSALYWTDVVEDKIYRGKLLDNGALTSF----EVVIQYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTLLAG-DIEHPRAIALDPRDGILFWTDWDASLPRIEAASMSGAGRRTVHRETGSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGSGHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTGHNVTVVQRTNTQPFDLQVYHPSRQPMAPNPCEANGGQGPCSHLCLINYNRTVSCACPHLMKLHKDNTTC 1578 HSP 8 Score: 140.198 bits (352), Expect = 4.687e-33 Identity = 89/269 (33.09%), Postives = 142/269 (52.79%), Query Frame = 1
Query: 1807 YWTDTIEKTINRRKINKDLSSTNSKPEVLVQNLTKPESLAVDWIHRKIYWIDTGKNELHVSNLDGSHSKLLI-KGNDQIELRSLAVYPEKQYIYWADWGSEPKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIV--SGLTSPYGVAVFEDYVYWTD-LHLKKLFKADKFKGS--NVKQFGSYLYQPMDIRVFHPLLQTKYAHPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTC 2595
YW D TI+R K ++ + +V+ + + E +AVDWI IYW D G + + V+ L+GS ++I +G D+ R++ V+PEK Y++W +WG P+IER+ L G ER +L + + W + I+VD +++W D + +I D+ + RE+V S + V+VFED++YW+D H K + +V Q DI+VF+ Q K + C+ NGGC LC +R CAC + L+ DG +C
Sbjct: 1937 YWVDMGLSTISRAKRDQTW-----REDVVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFRYVVISQGLDKP--RAITVHPEKGYLFWTEWGQYPRIERSRLDGTER-VVLVNVSISWPNGISVDYQDGKLYWCDARTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGSKDNATDSVPLRTGIGVQLKDIKVFNRDRQ-KGTNVCA-VANGGCQQLCLYRGRGQRACACAHGM-LAEDGASC 2194 HSP 9 Score: 134.42 bits (337), Expect = 3.231e-31 Identity = 88/211 (41.71%), Postives = 116/211 (54.98%), Query Frame = 3
Query: 261 CNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDEE-NCPAKTCPPNKFKC-GNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNCEKKTCATDEFQCNNGHCITD-TWKCDGSKDCTDGSDEVNCN-------NKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEAGC 863
C+E +F C+ + RC++ W CDG DDCGD SDE +C KTC P+ F C G C+PE W CD DC D DE+ C CD F C+ +QCI ++ CD DC +G D + CE TC EF+C NG C++ W+CDG DC D SDE N +K + QF C +SG C++ C+G +C D+SDE GC
Sbjct: 2734 CSEAQFECQ-NHRCISKQWLCDGSDDCGDGSDEAAHCEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA-AGCLYNSTCDDREFMCQN-RQCIPKHFVCDHDRDCADGSD-ESPECEYPTCGPSEFRCANGRCLSSRQWECDGENDCHDQSDEAPKNPHCTSQEHKCNASSQFLC-SSGRCVAEALLCNGQDDCGDSSDERGC 2939 HSP 10 Score: 127.487 bits (319), Expect = 3.635e-29 Identity = 93/327 (28.44%), Postives = 154/327 (47.09%), Query Frame = 1
Query: 1807 YWTDTIEKTINRRKINKDLSSTNSKPEVLVQNLTKPESLAVDWIHRKIYWIDTG-KNELHVSNLDGSHS--KLLIKGNDQIELRSLAVYPEKQYIYWADWGSEPK------IERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVSG--LTSPYGVAVFEDYVYWTDLHLKKLFKADKFKGS---NVKQFGSYLYQPMDIRVFHPLLQTKYAHPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTCVSNIQTTATTLKTNPTVSSICEYKCHSSNKCILKSQICDGKYQCPEHDDE 2745
Y+ DT I R+KI+ + +L + E +AVDW+ +YW D G K + V+ L+ + K LI+G R++ V P ++YW DW +PK +ERA + G R ++ + V W + +++D R++WVD RI + ++G D++ + G L +G+ +Y++WT+ +++ ++ G V S +IR++ Q + C +NGGCS LC AT R CAC L +DG TC++N P E+ C +S +CI + CDG C ++ DE
Sbjct: 574 YFADTTSYLIGRQKIDG-----TERETILKDGIHNVEGVAVDWMGDNLYWTDDGPKKTISVARLEKAAQTRKTLIEGK-MTHPRAIVVDPLNGWMYWTDWEEDPKDSRRGRLERAWMDGSHRDIFVTSKTVLWPNGLSLDIPAGRLYWVDAFYDRIETILLNGTDRKIVYEGPELNHAFGLCHHGNYLFWTEYRSGSVYRLERGVGGAPPTVTLLRSERPPIFEIRMYDAQQQQVGTNKCR-VNNGGCSSLCLATP-GSRQCACAEDQVLDADGVTCLANPSYVP------PPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDE 885 HSP 11 Score: 118.242 bits (295), Expect = 2.645e-26 Identity = 81/252 (32.14%), Postives = 107/252 (42.46%), Query Frame = 3
Query: 999 CHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETC---SANECANDEFRCSNGK-CIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDAKCGINECEIGNDGCHHDCVDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQKCLNTKGSYKCQCGKGYHLAPNKRSCKAEAP----EPFLVFANQYDVRSISTSGKDYRQISESKSASAVAVDI 1730
C QF C CI K W CDGE DCPD DEA E C A C +E C + C+ + C+G C DGSDE C + C+ + GC H CV G C C ++L DGK+C+D D+C +G CSQ C NT GS+ C C +GY L P+ RSCKA+ P L+ AN ++ + SG I+ + + A+D
Sbjct: 27 CSPKQFACRDQITCISKGWRCDGERDCPDGSDEAPEICPQSKAQRCQPNEHNCLGTELCVPMSRLCNGVQDCMDGSDE--------------------GPHCRELQGNCSRL-----------------------GCQHHCVPTLDGPTCYCNSSFQLQADGKTCKDFDECSVYGTCSQLCTNTDGSFICGCVEGYLLQPDNRSCKAKNEPVDRPPVLLIANSQNILATYLSGAQVSTITPTSTRQTTAMDF 235 HSP 12 Score: 117.472 bits (293), Expect = 4.175e-26 Identity = 79/271 (29.15%), Postives = 129/271 (47.60%), Query Frame = 1
Query: 1807 YWTDTIEKTINRRKINKDLSSTNSKPEVLVQNLTKPESLAVDWIHRKIYWI--DTGKNELHVSNLDGSHSKLLIKGNDQIELRSLAVYPEKQYIYWADWGSEPKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVSGLTSPYG----VAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYLYQPMDIRVFHPLLQT--KYAHPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTC 2595
YW+D + I R IN T V+ +L LAVDW+ R ++W DT K +++V+ LDGS +++G +Q L V+P + +YW D I AN+ G RT + S + K +A+D +++W+ +H I ++ G E++ + S G +A+ D ++W D +K+ K GS + M ++V+ +Q K +PCS + NG CS LC TS+ R+C C + L S + C
Sbjct: 1630 YWSDVRTQAIKRAFINGTGVET-----VVSADLPNAHGLAVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVVQGLEQPH--GLVVHPLRGKLYWTD---GDNISMANMDGSNRTLLFSGQ--KGPVGLAIDFPESKLYWISSGNHTINRCNLDGS-GLEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCSKADGSGSVVLRNSTTLVMHMKVYDESIQLDHKGTNPCSVN-NGDCSQLCLPTSETTRSCMCTAGYSLRSGQQAC 1886 HSP 13 Score: 107.071 bits (266), Expect = 5.461e-23 Identity = 84/281 (29.89%), Postives = 117/281 (41.64%), Query Frame = 3
Query: 522 DHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNCEKKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEAGCGKTTAPPKGIEKKALKSIKTNHPINSTKQLXXXXXXXXXXXXMAPCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAK-ETCSANECANDEFRCSNGKCIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDAKC 1361
D F+C +CI CDG C + D C + C QC+NG C+++ C+G+ DC DGSDE+ CN C +F+C G CI SRC+ +C D SDE C T + +K + C ++ C SW+CDG DC DY DE C + F C +G+CI CD + C G DE C+ C + F+C+N +CI +C+ +C G DE A C
Sbjct: 2528 DEFEC-ANGECINFSLTCDGVPHCKDKSDEKPSYCNSRRCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPCNKTACGVGEFRC-RDGTCIGNSSRCNQFVDCEDASDEMNCSATDC--SSYFRLGVKGVLFQ------------------------------PCERTSLCYAPSWVCDGANDCGDYSDERDCPGVKRPRCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHCNKF----CSEAQFECQNH-RCISKQWLCDGSDDCGDGSDEAAHC 2769 HSP 14 Score: 102.064 bits (253), Expect = 2.044e-21 Identity = 72/244 (29.51%), Postives = 118/244 (48.36%), Query Frame = 1
Query: 1915 ESLAVDWIHRKIYWIDTGKNELHVSNLDGSHSKLLIKGNDQIEL---RSLAVYPEKQYIYWADWGSEPKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIVSGLTSP--YGVAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYLYQPMD-------IRVFHPLLQTKY-AHPCSDDD---NGGCSHLCF-ATSDKERTCACPYTFKLSSDGKTC 2595
E +A+DW+ Y++D + + V N +G L+ +EL + +A+ P +++ D+G PK+ER ++ G+ RT ++ + V + I +D ++W D I D GK ++ I+ G+ YG+ VFE+Y+Y T+ K V +F S YQ + + ++H Q + +H C +D GGCS +C A S K RTC C F L SDGK+C
Sbjct: 283 EQMAIDWLTGNFYFVDDIDDRIFVCNRNGDTCVTLL----DLELYNPKGIALDPAMGKVFFTDYGQIPKVERCDMDGQNRTKLVDSKIV-FPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGRQTIIQGILIEHLYGLTVFENYLYATNS--DNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGALHIYHQRRQPRVRSHACENDQYGKPGGCSDICLLANSHKARTCRCRSGFSLGSDGKSC 519 HSP 15 Score: 87.0409 bits (214), Expect = 7.279e-17 Identity = 77/314 (24.52%), Postives = 143/314 (45.54%), Query Frame = 1
Query: 1837 NRRKINKDLSSTNSKPEVLVQNLTKPESLAVDWIHRKIYWIDTGKNELHVSNLD----GSHSK---LLIKGNDQIELRSLAVYPEKQYIYWADWGSE-PKIERANLMGEERTTILSHEHVKWTSSIAVDPTIERIFWVDMSSHRICSSDIHGKDKREIV-SGLTSPYGVAVFEDYVYWTDLHLKKLFKADKFKGSNVKQFGSYL-YQPMDIRVFHPLLQTKYAHPCSDDDNGGCSHLCFATSDKERTCACPYTFKLSSDGKTCVSNIQTTATTLKTNPTVSSICEYKCHSSNKCILKSQICDGKYQCPEHDDER 2748
N ++IN D S+ +V+N+ E LA +YW + + +D G+ + + + G+D R+ + + ++W +W + P I RA L G T++ + ++ + +A+D E++++ D + +I + G + I+ S P+G+AV+ ++++WTD + + +A+K GSN+K + QPM I + PC +NGGC LC T C+C G+ +Q T N + + E++C ++ +CI S CDG C + DE+
Sbjct: 2264 NIQQINDD----GSRRITIVENVGSVEGLAYHRGWDTLYWTSYTTSTITRHTVDQTRPGAFERETVITMSGDDHP--RAFVLDECQNLMFWTNWNEQHPSIMRAALSGANVLTLIEKD-IRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVYGEHIFWTDWVRRAVQRANKHVGSNMKLLRVDIPQQPMGIIAVANDTNSCELSPCR-INNGGCQDLCLLTHQGHVNCSC-------RGGRI----LQDDLTCRAVNSSCRAQDEFEC-ANGECINFSLTCDGVPHCKDKSDEK 2557 The following BLAST results are available for this feature:
BLAST of TCONS_00061561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.