TCONS_00061561-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061561-protein
Unique NameTCONS_00061561-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061561-protein ID=TCONS_00061561-protein|Name=TCONS_00061561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp
MKGTKTLLSYLLFIIGLQWKTVYALPPTCNEHEFMCELDKRCLNGAWKCD
GEDDCGDNSDEENCPAKTCPPNKFKCGNGRCIPESWTCDNMDDCGDNTDE
TTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNC
EKKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFK
CVTSGHCISADSRCDGVSECIDNSDEAGCGKTTAPPKGIEKKALKSIKTN
HPINSTKQLTSTTTTTTTTTTMAPCHDYQFKCSKSGKCIHKSWMCDGEPD
CPDYEDEAKETCSANECANDEFRCSNGKCIDSIQKCDGTNHCSDGSDEKD
CSTNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDAKCGINEC
EIGNDGCHHDCVDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQK
CLNTKGSYKCQCGKGYHLAPNKRSCKAEAPEPFLVFANQYDVRSISTSGK
DYRQISESKSASAVAVDIEDSMIYWTDTIEKTINRRKINKDLXILD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038626XLOC_038626Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061561TCONS_00061561Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002172LDrepeatLR_classA_rpt
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR0110426-blade_b-propeller_TolB-like
IPR023415LDLR_class-A_CS
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPRINTSPR00261LDLRECEPTORcoord: 165..186
score: 52.22
coord: 40..61
score: 51.66
coord: 79..100
score: 51.77
coord: 286..307
score: 54.77
coord: 124..145
score: 41.13
coord: 205..226
score: 45.45
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 358..397
e-value: 7.5E-8
score: 42.1
coord: 68..109
e-value: 2.6E-13
score: 60.2
coord: 112..152
e-value: 1.5E-6
score: 37.8
coord: 316..353
e-value: 2.9E-13
score: 60.1
coord: 154..191
e-value: 2.1E-14
score: 63.9
coord: 193..231
e-value: 2.6E-11
score: 53.6
coord: 274..314
e-value: 4.1E-13
score: 59.6
coord: 28..66
e-value: 1.3E-13
score: 61.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 67..101
e-value: 1.9E-12
score: 47.0
coord: 316..351
e-value: 5.7E-9
score: 36.0
coord: 192..229
e-value: 1.1E-8
score: 35.1
coord: 153..189
e-value: 1.5E-13
score: 50.6
coord: 359..395
e-value: 9.5E-6
score: 25.6
coord: 28..64
e-value: 2.0E-9
score: 37.4
coord: 274..312
e-value: 1.9E-10
score: 40.6
coord: 113..150
e-value: 5.7E-6
score: 26.4
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 274..313
score: 12.925
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 68..108
score: 13.825
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 154..190
score: 14.788
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 316..352
score: 14.012
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 28..65
score: 13.4
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 193..230
score: 12.675
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 358..396
score: 10.387
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 112..151
score: 11.438
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 358..392
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 111..150
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 193..229
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 311..351
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 146..189
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 63..102
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 23..65
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 273..311
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 437..476
e-value: 2.5E-8
score: 43.7
coord: 396..436
e-value: 2.5E-4
score: 30.4
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 437..475
e-value: 7.5E-7
score: 29.2
coord: 397..435
e-value: 2.5E-4
score: 21.1
IPR000742EGF-like domainSMARTSM00181egf_5coord: 440..476
e-value: 0.0069
score: 25.6
coord: 399..436
e-value: 1.3E-5
score: 34.7
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 437..476
score: 7.74
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 396..436
score: 7.616
NoneNo IPR availableGENE3D4.10.400.10coord: 312..355
e-value: 9.0E-12
score: 44.2
NoneNo IPR availableGENE3D2.10.25.10coord: 417..441
e-value: 3.0E-9
score: 36.1
NoneNo IPR availableGENE3D4.10.400.10coord: 195..230
e-value: 9.0E-12
score: 44.6
coord: 356..390
e-value: 2.0E-8
score: 33.8
NoneNo IPR availableGENE3D2.10.25.10coord: 442..477
e-value: 2.9E-11
score: 43.0
NoneNo IPR availableGENE3D2.10.25.10coord: 391..416
e-value: 0.045
score: 13.2
NoneNo IPR availableGENE3D4.10.400.10coord: 117..155
e-value: 1.7E-8
score: 34.0
coord: 156..194
e-value: 1.9E-16
score: 59.5
NoneNo IPR availableGENE3D4.10.400.10coord: 68..90
e-value: 4.9E-14
score: 51.8
coord: 268..311
e-value: 3.5E-12
score: 45.9
NoneNo IPR availableGENE3D4.10.1220.10coord: 91..116
e-value: 8.5E-10
score: 38.0
coord: 39..67
e-value: 4.7E-13
score: 48.4
NoneNo IPR availableCDDcd00112LDLacoord: 275..308
e-value: 3.51718E-6
score: 43.3494
NoneNo IPR availableCDDcd00112LDLacoord: 29..64
e-value: 1.27695E-6
score: 44.505
NoneNo IPR availableCDDcd00112LDLacoord: 155..189
e-value: 6.91501E-9
score: 51.0534
NoneNo IPR availableCDDcd00112LDLacoord: 113..150
e-value: 5.8983E-4
score: 36.801
NoneNo IPR availableCDDcd00112LDLacoord: 69..100
e-value: 4.75001E-8
score: 48.7422
NoneNo IPR availableCDDcd00112LDLacoord: 317..351
e-value: 1.90304E-8
score: 49.8978
NoneNo IPR availableCDDcd00112LDLacoord: 194..229
e-value: 4.42564E-5
score: 40.2678
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 400..444
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 431..476
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 478..543
e-value: 0.0075
score: 14.9
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 167..189
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 372..395
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 329..351
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 437..460
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 460..475
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 420..435
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 451..462
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 411..422

Blast
[Close]
BLAST of TCONS_00061561-protein vs. Swiss-Prot (Human)
Match: VLDLR (Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 4.628e-102
Identity = 208/516 (40.31%), Postives = 274/516 (53.10%), Query Frame = 0 
Query:   29 CNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDEENCPAKTCPPNKFKCGNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQC-EKTKQCIFRYEHCDGHNDCGEGDDSDERNCEKKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDEVNCNNKTCKADQFKCVTSGHCISADSRCDGVSECIDNSDEA--GCGKTTAPPKGIEKKALKSIKTNHPINSTKQLTSTTTTTTTTTTMAPCHDYQFKCSKSGKCIHKSWMCDGEPDCPDYEDEAKETCSANECANDEFRCSNGKCIDSIQKCDGTNHCSDGSDEKDCSTNIEIPCHKGTFQCRNSTKCIDFSMVCNNVPNCPMGDDEDAK-CGINECEIGNDGCHHDCVDKDIGYECKCRLGYKLAKDGKSCEDLDDCQEFGICSQKCLNTKGSYKCQCGKGYHLAPNKRSCKAEAPEPFLVFANQYDVRSISTSGKDYRQISES-KSASAVAVDIEDSMIYWTDTIEKTINRRKIN 539
            C   +F C  + RC+   WKCDG++DC D SDE+NC  KTC  + F C NG+C+P  W CD   DC D +DE+    H      C      C   + QCI     CDG NDC  G+  DE NC   TC+ DEF C++G CI+  + C+G  DC+DGSDE++C   TC A +F+C TS  CI     CD  ++C D SDE+   CG+                    P+  TK                 C   + +C  SG+CIHK W CDG+PDC D  DE    C +  C  D+F C +G CI   ++C+G   C DGSDE +C  N+      G F+CR S +CID S VCN   +C    DE  K C INEC + N GC H C D  IGYEC C  G++L  D K+C D+D+CQ  GICSQ C+N KG YKC+C +GY +      CKA   EP L+F N+ D+R I    K+Y Q+ E  ++  A+  DI    ++W D  +K I    I+
Sbjct:   33 CEPSQFQCT-NGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDESPEQCHMRT---CRIHEISCGAHSTQCIPVSWRCDGENDCDSGE--DEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSS-CIPISWVCDDDADCSDQSDESLEQCGR-------------------QPVIHTK-----------------CPASEIQCG-SGECIHKKWRCDGDPDCKDGSDEVN--CPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCK-NVNQCLGPGKFKCR-SGECIDISKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASID 499

HSP 2 Score: 94.3597 bits (233), Expect = 3.520e-20
Identity = 66/170 (38.82%), Postives = 90/170 (52.94%), Query Frame = 0 
Query:   26 PPTCNEHEFMCELDKRCLNGAWKCDGEDDCGDNSDE--ENCPAKT-----CPPNKFKCGNGRCIPESWTCDNMDDCGDNTDETTPWLHCPVTPYCDSDHFQCEKTKQCIFRYEHCDGHNDCGEGDDSDERNCE--KKTCATDEFQCNNGHCITDTWKCDGSKDCTDGSDE 186
            PPTC  HEF C     C+  +W CD + DC D SDE  E C  +      CP ++ +CG+G CI + W CD   DC D +DE    ++CP +  C  D F+CE    CI     C+G  DC +G  SDE NC+   +     +F+C +G CI  +  C+  +DC D SDE
Sbjct:  190 PPTCGAHEFQCSTSS-CIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDE----VNCP-SRTCRPDQFECED-GSCIHGSRQCNGIRDCVDG--SDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDE 350
The following BLAST results are available for this feature:
BLAST of TCONS_00061561-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VLDLR4.628e-10240.31Very low-density lipoprotein receptor OS=Homo sapi... [more]
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