TCONS_00061552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061552
Unique NameTCONS_00061552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061552 ID=TCONS_00061552|Name=TCONS_00061552|organism=Clytia hemisphaerica|type=transcript|length=1775bp
CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGATTGAGAACGATAAGGAAATCGACTGATGCTGT
CTGGCCACCCAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTAT
CAAACATCATGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGC
CTCTTCGGGCAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAG
GATGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCA
AGGAAAAGGATCTTCGAAAAATGGACCAATATCTCCTATAAGAACGAAAT
CTCCAAAAACCAGACCAACATCAGCAAAGAAATCAGAAAagTTCAGCACT
CTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTTATCAGATCTCACA
AGCAATGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACT
GAACAAGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAA
TCAAAACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGT
CGACAATTAATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAA
AGACCTAGACGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAG
AACCTCTGTTAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATG
GATTTCCCATGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtt
tttctatattttcactgacagatttttttatcataaattttgTTACCTCT
TTTTAATTAGTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTG
AAAGCTAGTAATTTATTCgctttttgtatttgttttttaatttgataccc
CTGTTGGGGTAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAA
ACACATTTTCAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGA
AATCACTAGCTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATT
TATTATATCTTTATATCAAGCTTTTGTtaatatttcattgattttaaatA
ATATCAGATAAACAATTTCAGATAtttatctttaaatttttatttgcatA
CAAAAGATATAAATAttgtataaaatattttaatatatataaaaaagttc
TTGTTTCCAAGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCC
GTTTTTTCATGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTT
GAGGGGGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAA
CAGTACATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATG
GAACGTGTACAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTT
TTTTTGGGGATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccgg
attttttttaatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATT
TTTGTCTACTAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaa
agtttgaaaatctagcCCTTGGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_36:14771..17840+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061552 ID=TCONS_00061552|Name=TCONS_00061552|organism=Clytia hemisphaerica|type=transcript|length=3070bp|location=Sequence derived from alignment at scaffold_36:14771..17840+ (Clytia hemisphaerica)
CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGGTAAGAATTCGGAATCTAATAAATATTACTTAA
GTTCTTTGTGCTTGATAAACCCTGTGCAGCCTCTAACAGGTTATCATTAA
TCTAGCAGGCCTAGTTTGTGGTTTTGAGAGGGGTAAATCACACCAAGAAA
TAGTGTGAAGGCTCTTCAATTTTTGAGAGGTTTGAGATTGAGGGTCTACA
AGtcttattttatattttcaatttgtttaaaCAGATTGAGAACGATAAGG
AAATCGACTGATGCTGTCTGGCCACCCAAGTCGGTAGATCTTCCGACATT
TGAAAGCGACAAGTTATCAAACATCATGAAATTGGAAGATATTTTGACGG
ACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGACTTGGATGACATTAGA
ACTATGGTCAAGAATAGGATGACCCAGCGACGACGAGAATCAAGGAAAAG
AAGCATTGACTTTACCAAGGTTAGATACTGTTTTCATTTTACAGAATTCA
TACAGTGTCGTTTTTATTTCCCCTGTGTAACTGAtgtataagtaagtaag
tatattcatctggtggctgtcggcggagcggtaagtgagggagtctatcc
ccttttctatttgcgctagacctgggtgatcgaatgctgaggtggagtgc
CACACCTACTCTCTGCTCCCAGTTACTTACCCcttagatcagattaccca
atctaagctactcattcgctgagttgccggtgaccggggatcgaacccac
aacccttggattgtaaggcgaatgcccTAACGACCAAGCTACTCGGCCTC
AAATGTATATTGATGTATATTCTAGTGAAATCACTTTACAAAGAGCCTCA
ATACAGTCAGCTATTCTCATTTTTCTTAGGAAAAGGATCTTCGAAAAATG
GACCAATATCTCCTATAAGAACGAAATCTCCAAAAACCAGACCAACATCA
GCAAAGAAATCAGAAAaggtaaataaattcatttatttgGTAATAGCTTG
ATCTAAGGGCTGCACTTCTTAAATTATATAAGCTAAattcttgtcaattt
ttttatgttgATAGCAAATTTTCATGGGTTCAATTTTTAagcattaaaat
tttttttctgctaATACGGGGTTCCCCGTGGTCAGTGAAAACCTGGAAAG
TCAATGAGTTTTTGTAAAATTCCTCAAAAGTCAGGGAAGTTCTTTCCAGA
ATCCCTTGAAATTGatggtttttttaaatttaatcatTCCTATATTTCTT
TTAGTTCAGCACTCTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTT
ATCAGGTAGGTGCAtgtgtttctttttaaaaactcaaattttaagAGTCA
AGCCGGCAAAGTTTAAGTTTGCCTAAATTTCCTACcctgtcaaaaaattt
tcaagtttaaaaatggGTAAAATGTATTTTTGTAGTTTTCCAAAAAACTT
TTCTGGTATAAATGTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGT
CTCAANTGCCTAAATTTCCTACCctgtcaaaatattttcaagtttaaaaa
tgggtaaaaagtatttttgtagttttccaaaaaactgTTCTGGTATAAAT
GTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGTCTCAATCAAGACT
TCAATATTGATAAATAACATGACTTCATTTCTTTTAGATCTCACAAGCAA
TGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACTGAACA
AGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAATCAAA
ACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGTCGACA
ATTAATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAAAGACC
TAGACGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAGAACCT
CTGTTAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATGGATTT
CCCATGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtttttct
atattttcactgacagatttttttatcataaattttgTTACCTCTTTTTA
ATTAGTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTGAAAGC
TAGTAATTTATTCgctttttgtatttgttttttaatttgatacccCTGTT
GGGGTAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAAACACA
TTTTCAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGAAATCA
CTAGCTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTA
TATCTTTATATCAAGCTTTTGTtaatatttcattgattttaaatAATATC
AGATAAACAATTTCAGATAtttatctttaaatttttatttgcatACAAAA
GATATAAATAttgtataaaatattttaatatatataaaaaagttcTTGTT
TCCAAGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCCGTTTT
TTCATGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTTGAGGG
GGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAACAGTA
CATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATGGAACG
TGTACAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTTTTTTT
GGGGATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccggatttt
ttttaatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATTTTTGT
CTACTAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaaagttt
gaaaatctagcCCTTGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038620XLOC_038620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061552-exon-scaffold_36-1491911889:14771..14937TCONS_00061552-exon-scaffold_36-1491911889:14771..14937Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1510915933:14771..14937TCONS_00061552-exon-scaffold_36-1510915933:14771..14937Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1575043694:14771..14937TCONS_00061552-exon-scaffold_36-1575043694:14771..14937Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1491911889:15155..15389TCONS_00061552-exon-scaffold_36-1491911889:15155..15389Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1510915933:15155..15389TCONS_00061552-exon-scaffold_36-1510915933:15155..15389Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1575043694:15155..15389TCONS_00061552-exon-scaffold_36-1575043694:15155..15389Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1491911889:15800..15888TCONS_00061552-exon-scaffold_36-1491911889:15800..15888Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1510915933:15800..15888TCONS_00061552-exon-scaffold_36-1510915933:15800..15888Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1575043694:15800..15888TCONS_00061552-exon-scaffold_36-1575043694:15800..15888Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1491911889:16175..16225TCONS_00061552-exon-scaffold_36-1491911889:16175..16225Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1510915933:16175..16225TCONS_00061552-exon-scaffold_36-1510915933:16175..16225Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1575043694:16175..16225TCONS_00061552-exon-scaffold_36-1575043694:16175..16225Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1491911889:16608..17840TCONS_00061552-exon-scaffold_36-1491911889:16608..17840Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1510915933:16608..17840TCONS_00061552-exon-scaffold_36-1510915933:16608..17840Clytia hemisphaericaexon
TCONS_00061552-exon-scaffold_36-1575043694:16608..17840TCONS_00061552-exon-scaffold_36-1575043694:16608..17840Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:14771..17840 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260104	2.94184e-06	0	0	48.3089	36.8212	14.1385	16.7483	6.20591	6.60947	4.22281	3.95249	2.22717	2.24878	3.023	2.21766	4.21039	1.76641	1.15612	0.666916	3.21453	2.79992	1.96113	3.23148	3.6808	8.33206	5.04258	3.05851	2.61499	2.66942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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