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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061552 ID=TCONS_00061552|Name=TCONS_00061552|organism=Clytia hemisphaerica|type=transcript|length=1775bp CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT CAAAGACACAAATTGAGATTGAGAACGATAAGGAAATCGACTGATGCTGT CTGGCCACCCAAGTCGGTAGATCTTCCGACATTTGAAAGCGACAAGTTAT CAAACATCATGAAATTGGAAGATATTTTGACGGACCTAAAATCAAAAAGC CTCTTCGGGCAAATGGACTTGGATGACATTAGAACTATGGTCAAGAATAG GATGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCATTGACTTTACCA AGGAAAAGGATCTTCGAAAAATGGACCAATATCTCCTATAAGAACGAAAT CTCCAAAAACCAGACCAACATCAGCAAAGAAATCAGAAAagTTCAGCACT CTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTTATCAGATCTCACA AGCAATGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACT GAACAAGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAA TCAAAACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGT CGACAATTAATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAA AGACCTAGACGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAG AACCTCTGTTAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATG GATTTCCCATGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtt tttctatattttcactgacagatttttttatcataaattttgTTACCTCT TTTTAATTAGTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTG AAAGCTAGTAATTTATTCgctttttgtatttgttttttaatttgataccc CTGTTGGGGTAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAA ACACATTTTCAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGA AATCACTAGCTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATT TATTATATCTTTATATCAAGCTTTTGTtaatatttcattgattttaaatA ATATCAGATAAACAATTTCAGATAtttatctttaaatttttatttgcatA CAAAAGATATAAATAttgtataaaatattttaatatatataaaaaagttc TTGTTTCCAAGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCC GTTTTTTCATGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTT GAGGGGGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAA CAGTACATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATG GAACGTGTACAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTT TTTTTGGGGATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccgg attttttttaatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATT TTTGTCTACTAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaa agtttgaaaatctagcCCTTGGGAA Run BLAST on NCBI transcript from alignment at scaffold_36:14771..17840+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061552 ID=TCONS_00061552|Name=TCONS_00061552|organism=Clytia hemisphaerica|type=transcript|length=3070bp|location=Sequence derived from alignment at scaffold_36:14771..17840+ (Clytia hemisphaerica) CTTGGTTGTGCCCAGAGGGTGTTTTACTTTGAGAAAATGGAGATTACAAT
CAAACAAATGCTGATTCTGGAACGTGATTTCAATGCACCTTGCAATAATC
AGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGAGCACTTGCCTCT
CAAAGACACAAATTGAGGTAAGAATTCGGAATCTAATAAATATTACTTAA
GTTCTTTGTGCTTGATAAACCCTGTGCAGCCTCTAACAGGTTATCATTAA
TCTAGCAGGCCTAGTTTGTGGTTTTGAGAGGGGTAAATCACACCAAGAAA
TAGTGTGAAGGCTCTTCAATTTTTGAGAGGTTTGAGATTGAGGGTCTACA
AGtcttattttatattttcaatttgtttaaaCAGATTGAGAACGATAAGG
AAATCGACTGATGCTGTCTGGCCACCCAAGTCGGTAGATCTTCCGACATT
TGAAAGCGACAAGTTATCAAACATCATGAAATTGGAAGATATTTTGACGG
ACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGACTTGGATGACATTAGA
ACTATGGTCAAGAATAGGATGACCCAGCGACGACGAGAATCAAGGAAAAG
AAGCATTGACTTTACCAAGGTTAGATACTGTTTTCATTTTACAGAATTCA
TACAGTGTCGTTTTTATTTCCCCTGTGTAACTGAtgtataagtaagtaag
tatattcatctggtggctgtcggcggagcggtaagtgagggagtctatcc
ccttttctatttgcgctagacctgggtgatcgaatgctgaggtggagtgc
CACACCTACTCTCTGCTCCCAGTTACTTACCCcttagatcagattaccca
atctaagctactcattcgctgagttgccggtgaccggggatcgaacccac
aacccttggattgtaaggcgaatgcccTAACGACCAAGCTACTCGGCCTC
AAATGTATATTGATGTATATTCTAGTGAAATCACTTTACAAAGAGCCTCA
ATACAGTCAGCTATTCTCATTTTTCTTAGGAAAAGGATCTTCGAAAAATG
GACCAATATCTCCTATAAGAACGAAATCTCCAAAAACCAGACCAACATCA
GCAAAGAAATCAGAAAaggtaaataaattcatttatttgGTAATAGCTTG
ATCTAAGGGCTGCACTTCTTAAATTATATAAGCTAAattcttgtcaattt
ttttatgttgATAGCAAATTTTCATGGGTTCAATTTTTAagcattaaaat
tttttttctgctaATACGGGGTTCCCCGTGGTCAGTGAAAACCTGGAAAG
TCAATGAGTTTTTGTAAAATTCCTCAAAAGTCAGGGAAGTTCTTTCCAGA
ATCCCTTGAAATTGatggtttttttaaatttaatcatTCCTATATTTCTT
TTAGTTCAGCACTCTCACTCGCCAAGATCACCGAGACCCATCAAAAAGTT
ATCAGGTAGGTGCAtgtgtttctttttaaaaactcaaattttaagAGTCA
AGCCGGCAAAGTTTAAGTTTGCCTAAATTTCCTACcctgtcaaaaaattt
tcaagtttaaaaatggGTAAAATGTATTTTTGTAGTTTTCCAAAAAACTT
TTCTGGTATAAATGTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGT
CTCAANTGCCTAAATTTCCTACCctgtcaaaatattttcaagtttaaaaa
tgggtaaaaagtatttttgtagttttccaaaaaactgTTCTGGTATAAAT
GTTGGTAATGAATAGGCACTGTGTGTAAAATTTTAGTCTCAATCAAGACT
TCAATATTGATAAATAACATGACTTCATTTCTTTTAGATCTCACAAGCAA
TGACCTGAGAGAAGTGACGAGATTGTTTACAGATAAAACAGAACTGAACA
AGCGTGCAATCTTCAATGAAGTCTCGTCTTTCAAACAACTAAAAATCAAA
ACACAAAATGTTATGACCGTGGAGGCAATGGCTGAAGATGTAGGTCGACA
ATTAATTAAACACAAAATGGTATTGGTGTATAGTGTGCCTGTTAAAGACC
TAGACGATGTTTTCATTATCGCAAAGTAACTCTTTACGAAGATAGAACCT
CTGTTAAAATTTTGTTTTATTATTGCTTTCATTGTTGGATGGATGGATTT
CCCATGTTTGTATTTATATTACAACCCACGAAAACCGAAAAcgtttttct
atattttcactgacagatttttttatcataaattttgTTACCTCTTTTTA
ATTAGTATTCTGCTTAATGCAACAAACATAGCAGTGTAAAAACTGAAAGC
TAGTAATTTATTCgctttttgtatttgttttttaatttgatacccCTGTT
GGGGTAGGGTAGGGACTACTAGTAGTAAAAGTATTGCCACGTTAAACACA
TTTTCAAATCTTTCTGGATATATTTCAGGATTGACATGAAATTGAAATCA
CTAGCTAAAGAACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTA
TATCTTTATATCAAGCTTTTGTtaatatttcattgattttaaatAATATC
AGATAAACAATTTCAGATAtttatctttaaatttttatttgcatACAAAA
GATATAAATAttgtataaaatattttaatatatataaaaaagttcTTGTT
TCCAAGGAAAAAAGCAATTATCGCCAAAAGATAAAGGTCAAATCCGTTTT
TTCATGTGCTTCCGATGAGAAACTTGACGTAATTTTGACCATGTTGAGGG
GGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGGAACAGTA
CATTTTTGGGGTGGAAAATGCCTTTTTTCGGGGCTGGGGAAAATGGAACG
TGTACAGGTCTGGGAACAGGGCATTTTCGGGGTAGCAAATGCCTTTTTTT
GGGGATGGGATTTGGCTTTGGAAAATGAAGCATTTTCCACCccggatttt
ttttaatttcggggCCGAAAATGACCAGCTCCACAACCCGTGATTTTTGT
CTACTAAAAACACCGACCTGAAAACTAGCAATTTTCGACCccgaaagttt
gaaaatctagcCCTTGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061552-exon-scaffold_36-1491911889:14771..14937 | TCONS_00061552-exon-scaffold_36-1491911889:14771..14937 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1510915933:14771..14937 | TCONS_00061552-exon-scaffold_36-1510915933:14771..14937 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1575043694:14771..14937 | TCONS_00061552-exon-scaffold_36-1575043694:14771..14937 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1491911889:15155..15389 | TCONS_00061552-exon-scaffold_36-1491911889:15155..15389 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1510915933:15155..15389 | TCONS_00061552-exon-scaffold_36-1510915933:15155..15389 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1575043694:15155..15389 | TCONS_00061552-exon-scaffold_36-1575043694:15155..15389 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1491911889:15800..15888 | TCONS_00061552-exon-scaffold_36-1491911889:15800..15888 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1510915933:15800..15888 | TCONS_00061552-exon-scaffold_36-1510915933:15800..15888 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1575043694:15800..15888 | TCONS_00061552-exon-scaffold_36-1575043694:15800..15888 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1491911889:16175..16225 | TCONS_00061552-exon-scaffold_36-1491911889:16175..16225 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1510915933:16175..16225 | TCONS_00061552-exon-scaffold_36-1510915933:16175..16225 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1575043694:16175..16225 | TCONS_00061552-exon-scaffold_36-1575043694:16175..16225 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1491911889:16608..17840 | TCONS_00061552-exon-scaffold_36-1491911889:16608..17840 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1510915933:16608..17840 | TCONS_00061552-exon-scaffold_36-1510915933:16608..17840 | Clytia hemisphaerica | exon |
TCONS_00061552-exon-scaffold_36-1575043694:16608..17840 | TCONS_00061552-exon-scaffold_36-1575043694:16608..17840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_36 | supercontig | scaffold_36:14771..17840 + |
Blast
The following BLAST results are available for this feature:
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