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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061532 ID=TCONS_00061532|Name=TCONS_00061532|organism=Clytia hemisphaerica|type=transcript|length=1043bp
CATCTTCTGTTAAGTCGAGTGTggtctttttaaagaaatttctgTCATTC
CAAACTCAAATCAACTTTCTTAATTGcgtaaagaaaaatctttttgttat
CTTTGATTGAAATCTTAATCACATTAAATTACCCTTTCTGTACCTACATA
CCAACCACTCCTAATTACCTTGCCAAATATGGTATTTCATCAACCAAAAC
TATACAACGATAAATGTGCGTACAACATCCAATCAAATTATCTGCTCCAT
TGTTGAATTAAACATTAGGTCCCGGTGGTCGAGCTCCAAGGCATGAGCCT
TATCGAAAATAAAGCACAATTAaggaaatgaaaaagttttggtATCATAA
AAATTGATCATTAATTATTGGCATAACAATGATTCTAATGATAAGATAAT
TGGAAGATGTTTGCCTTCTTAACTACTATATTATTTTTGGTCAACCCGGT
ATAGCCACTATCATCTAACCTTCTCCAACAAGCGTTTTGTATTGCATTTT
CTGTAAGCAGAAAAATGGCATTGTGGATCTTAATGTTTGGACTACAGCCA
AGTAAAAATTCGGCATTGTTtacaaaagaaacatttttaaccATATAGGG
TACACACAGGGTTTATTGGGTAACCTTCAACTTCAgatgtatatttattt
tttcgcACAAAAATGGGTACCTTCACAAGTATTTACTTTacgtaagaatt
ttttttttagtctTCTTAGTTTCtttctatttcaaattttgtttttatta
tgttttcttttttgggaTTCTTGAACTCTTGACTATAGCCTTTCATCAAT
CTCGTTAACTAGCTTTGAGTTTCTTAGATTCTTAGCCTTGGTACGTGTAA
AGTCTCAGATACGTTTAAAACTAGCGGCCTTAcgtaaaaaaaaagtttat
caagGGTAACTAATTcttcctgaaaaatttgataattagacaattttatg
tatatatttttcatattttttgttgcattctttttaaattcacaaaaaaa
ctttgaataaCGATACatctcaaatttcttttaaattgttttg Run BLAST on NCBI transcript from alignment at scaffold_359:111651..114355- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061532 ID=TCONS_00061532|Name=TCONS_00061532|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at scaffold_359:111651..114355- (Clytia hemisphaerica)
CATCTTCTGTTAAGTCGAGTGTGGTCTTTTTAAAGAAATTTCTGTCATTC
CAAACTCAAATCAACTTTCTTAATTGCGTAAAGAAAAATCTTTTTGTTAT
CTTTGATTGAAATCTTAATCACATTAAATTACCCTTTCTGTACCTACATA
CCAACCACTCCTAATTACCTTGCCAAATATGGTATTTCATCAACCAAAAC
TATACAACGATAAATGTGCGTACAACATCCAATCAAATTATCTGCTCCAT
TGTTGAATTAAACATTAGGTAAGTCATCAAATGTAGAACTTTATATTCTC
CAAATGAAGACTAGTTCCGGGGAAGAAGGTACTTAGGAAAAATGTGTGCC
GGGTATGTGTGAGCGATAAGGGTCCCTTTTTCACACTCTCAAAAGTCTCT
CAAAGGGGTACAAAAACCATTCAAAAGCAAATTGAGTCTCTGTAAGGGAG
CAAAATTCACGAAAATCGAAATTTCCTCTCTCAAAGGGTCGTGATTTTCA
AAATTGTTGACAAAATCTAGTGAAAATAGACAACAATTTTGAGTAAAGTC
TCTAAGGGTCCCAAAAATGCCATTTTTTCTCTCTCTATGGGTAGATTTTC
GACTTAGGATTGGACATACCCGTCACCTTGCAAACCTAGTACCCCCCCCC
CCTTTACCCGCGGGTCTTTAGTTTGCTTTTTGGGGTCACTCGCATATCGA
GGTCTCCCACAATAAATGACGTGAGGGGGTGGGGGATCAGAAGCAGTGAA
GCTAAGAAAATCCATCAAAACATCGATTTTCTAGGCTGATTGAAATCTAA
TTTTGTCTTGGACTAACCTTTAGAATGACGTTAGTCGTGAGAAAGATCGA
TATGAGTGGTTCCTAGACAATCTAAATTGTTTGAGTTTTGGACAACCCTA
TCCTATCTTGCACAAAGCTACAAGAAAAAACACAAGTTTTAAGAACTTAC
AAGGGTCAGACTCAAATAACATACAGTTGACTGTCTTTAATTCGTTCCTT
ATCAGAGCAAAAATTTCTTCAAATCATAGAAAGATTGGAATTACAGAGAG
TAATTTAAACCACTTTCCAGCTGAGGGAGCAATATTTTAGTTCGAATCGC
AGAAAGACTCGAATAATAGAAGTTCGAATTCGACCGGTCTGTAAAATACC
AAGCACGCACGTGACTAAAGTGAAGTTTTGCACACTGCCTTAGAACTAAA
AAACTATCACTTGTGAAAATTTTAATTCAAAAGCTGTAGTAGCTCTCGAG
TTCCTGCAGGGGGGGGGGCTGAACGTGTATTTTACAGAATACAAATGCAA
ATGGGATCAAATTCATTCCATTACCAGCCTCCTTTACTTGACAAACTAGC
TTTCAGAAACGAAATTGGCCGAAGCAAAATTTTGCAAATCATCTCCAATT
ATCCATATCTACCAATTCTGGTCAAAATTTCAAAGTTCATAGTGGTACCT
GGAGTCCCCCCTCCCCTCAAAAATAATAATGTTTCCCCTAGTAAAGAAAT
AGGACGCCATAAATATTTGGTATAATGTTTTGTTACATCAGGGTCACTTG
TCATGACAGAACGTCTGTGTGTGGTCTTTACTATCTTTATATCCTTGACA
TAACTGATTGATAAAATTATCAATTAATGGGTTTGTTCCTCTATGTAATT
TTTTGAAGTAAAAGAATTTTCGAGATGAAAATGTCGTGTTTCCAGAATTC
CCGTAAAGGAAAATTTTTCGATCGACCTCAAACTGATGGTTTTGTTTCAT
TAATTTTTATGAATTTTTTTCTTCACCGGACTCTTTTCAGGAACCCTAAT
CTTTGATTTTTGTCTGTGCTAAAGGTAAAGCAATGGCGTGATTTCTTTGG
AAATTTATTTTCAAACCTCAAAACTCCGAAATTCCAATTGAAGCTTATAC
CTGTCATTCTTCTTTGTTTTCTTTTTGTAGGTCCCGGTGGTCGAGCTCCA
AGGCATGAGCCTTATCGAAAATAAAGCACAATTAAGGAAATGAAAAAGTT
TTGGTATCATAAAAATTGATCATTAATTATTGGCATAACAATGATTCTAA
TGATAAGATAATTGGAAGATGTTTGCCTTCTTAACTACTATATTATTTTT
GGTCAACCCGGTATAGCCACTATCATCTAACCTTCTCCAACAAGCGTTTT
GTATTGCATTTTCTGTAAGCAGAAAAATGGCATTGTGGATCTTAATGTTT
GGACTACAGCCAAGTAAAAATTCGGCATTGTTTACAAAAGAAACATTTTT
AACCATATAGGGTACACACAGGGTTTATTGGGTAACCTTCAACTTCAGAT
GTATATTTATTTTTTCGCACAAAAATGGGTACCTTCACAAGTATTTACTT
TACGTAAGAATTTTTTTTTTAGTCTTCTTAGTTTCTTTCTATTTCAAATT
TTGTTTTTATTATGTTTTCTTTTTTGGGATTCTTGAACTCTTGACTATAG
CCTTTCATCAATCTCGTTAACTAGCTTTGAGTTTCTTAGATTCTTAGCCT
TGGTACGTGTAAAGTCTCAGATACGTTTAAAACTAGCGGCCTTACGTAAA
AAAAAAGTTTATCAAGGGTAACTAATTCTTCCTGAAAAATTTGATAATTA
GACAATTTTATGTATATATTTTTCATATTTTTTGTTGCATTCTTTTTAAA
TTCACAAAAAAACTTTGAATAACGATACATCTCAAATTTCTTTTAAATTG
TTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061532-exon-scaffold_359-1575043694:114088..114355 | TCONS_00061532-exon-scaffold_359-1575043694:114088..114355 | Clytia hemisphaerica | exon |
| TCONS_00061532-exon-scaffold_359-1575043694:111651..112425 | TCONS_00061532-exon-scaffold_359-1575043694:111651..112425 | Clytia hemisphaerica | exon |
| TCONS_00061532-exon-scaffold_359-1510915933:114088..114355 | TCONS_00061532-exon-scaffold_359-1510915933:114088..114355 | Clytia hemisphaerica | exon |
| TCONS_00061532-exon-scaffold_359-1510915933:111651..112425 | TCONS_00061532-exon-scaffold_359-1510915933:111651..112425 | Clytia hemisphaerica | exon |
| TCONS_00061532-exon-scaffold_359-1491911889:114088..114355 | TCONS_00061532-exon-scaffold_359-1491911889:114088..114355 | Clytia hemisphaerica | exon |
| TCONS_00061532-exon-scaffold_359-1491911889:111651..112425 | TCONS_00061532-exon-scaffold_359-1491911889:111651..112425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:111651..114355 - |
Blast
The following BLAST results are available for this feature:
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