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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=transcript|length=1654bp
AAACCGATGACACAAGCTTAGATTTCATTATgaaagtaacaacaacaaaa
caaaaatgacgAACGCAACATCGAATAACGAAGAAATGAACTCAAATCAA
ACTATAGATTTAGAATTATCACTGATTGGATTTGGTCTGGTCGTCATGAG
TCTTTCAATCATAATCCCAAACGCCATTGTCATCtacgttttcaaaacaa
aaaaaaaactacaaaaaccaaaatattattttatactTTCCCTAGCTGTA
GCGGATCTACTAGTGGGTTTTTCAATAAATCCTTATACTATTTTACTAAT
GATTGGTCACTGGCCACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTT
TAGATCACTATATAGGAACAGCATCGAACTTTTGTCTCATTTTTATCGCA
TTTGATCGATTTGGATCGATATTTTACCCGATGACTCATAAAGTGAAATG
CGATGCTCGATTCATGAAACGATGTGTGATTCTTATATGGTTGCTACCAG
TTTTGGTCTGGCCGCTACCCATCCTGATCTACCCTTATACTGAGGAAGAC
CCTGATAGAGTCATGGCATCGAGCGAATGTTACGTacatttctatcaaaa
tgataTTACTGTAACATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCT
GTATTATATTACTGGTAATTTATTTATGTATATGGAGACGGATTTCAAGA
ATCAGTGGAGGTGAAAAGAAAATCTATGTTATACCAGACAAAGCAGTCGA
GTATCTAGCCTCACTTTCTACTATTGCAGATGACTTTGGTAATAAGAAAG
GACATATTAACCAGGGGTTTAATATAAAGGACGAGAACATCAATTTAACT
ATGGAAGATTCTCTAGATAGTGTTAATAATACCAGCCAAAGAGATTCTCG
GGTCAACTCTTTGGATAAGATAGACGTaaagaaggaagaaaaacaTGTTA
AAGATGGTAAAAGGATGAGATTCTCAACACTTTCAGAAACATTATTGCTA
TCACCAAGACCAAGATCTGCCACTGCGACGACAAAGCTTGAGAACCATAA
CGAGTTACAATCTACTACTACTCAAACAGCACCAAAACGACAACGAAGAT
TCACTTTAAATACGTTAGACTTTCATATGAAACTTGGATTTAATTCACCA
GTAGGGAAAAAACGTGATAGAACATCCAATATTTCCCTTTTTGGGGAACG
AAAGACTTCATGTGAACGAAAAATGGATAAATGTAGACAAAAGAATAAAA
GGAGTGCTTTAAAATGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGT
TGGTTTCCATATCATATAACTGTACTAGCAAGATCAATCTTAAAGACATC
TTTACCAGAGCCTTTATGGAGATTTTGCTACATCTTTGGTTGGCTGAACT
CACTTTTTAATCCCGTTTGCTATGCATTTGCTAACCGTGGATTTAAAGAT
CAGGTTAAagagattttctgaaaaaaagataaacGCATTGATTTTGGTTC
CCCAGGTGACTGTCCGCAATAATCATTAATTTATAAGTCTTGctgaattt
aattttgtaaatatacTACTATGCTACTATGTAtacattatatattatat
tttgtaAATACCGGTTACTCAAAAAAAAGCttaagataacttttaaacac
AATT Run BLAST on NCBI protein sequence of TCONS_00061531-protein >TCONS_00061531-protein ID=TCONS_00061531-protein|Name=TCONS_00061531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFKTKK
KLQKPKYYFILSLAVADLLVGFSINPYTILLMIGHWPLGRGLCYTWLVLD
HYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVILIWLLPVL
VWPLPILIYPYTEEDPDRVMASSECYVHFYQNDITVTSTVVVLSYFAPCI
ILLVIYLCIWRRISRISGGEKKIYVIPDKAVEYLASLSTIADDFGNKKGH
INQGFNIKDENINLTMEDSLDSVNNTSQRDSRVNSLDKIDVKKEEKHVKD
GKRMRFSTLSETLLLSPRPRSATATTKLENHNELQSTTTQTAPKRQRRFT
LNTLDFHMKLGFNSPVGKKRDRTSNISLFGERKTSCERKMDKCRQKNKRS
ALKWILLVSTAFFICWFPYHITVLARSILKTSLPEPLWRFCYIFGWLNSL
FNPVCYAFANRGFKDQVKEIF Run BLAST on NCBI transcript from alignment at scaffold_359:98429..110968- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=transcript|length=12540bp|location=Sequence derived from alignment at scaffold_359:98429..110968- (Clytia hemisphaerica)
AAACCGATGACACAAGCTTAGATTTCATTATGTAAGTTTGATTCTTTTCC
GTTATTTTATTGTCTTGTGGCTCAATTTGAAATGTTCTATAATTTCTCAC
TCGTCATTTTACTGGACTAACCCTTTAACTGCCGAATGTCGGCATATGCG
GGTATGGGCACTTTCCATTTCTTTGCCACGGTTTTTTTTAAGTTTATTGA
AAATTTCGATTTTGAACTAGATTTCATTCAATACACGCTTTTTTTTTTAT
TATAAGAATACACTATAAGAATGTCCATGATGAAAATAGCTAAAAAATTA
AGAATAACGCTAAGAATATCACCATCAAGGAATTTTGCTACTCAAGTTAA
GAATGCCATTTATAGAGCATTTTCAATTATAAGTTGTCAATTACCCCCAA
GCAAGGCTCACTCCTTTCACAAAAATACAATTTTATGCTTGAGACGTATG
TTCTAAATGTTAAATCTAGTCTGAATTAGGATCCTAACCTAAGAATGCTG
TAAGAATATTTTAGGATGATTTTCCTAAAAAAAGTTAAGAATATCCATGA
TGAAATGGATTTACTCCATTCTTATAAAAAAAGAGCGTGTAGCACAGTCA
CAGTTGAATAATTAAAATTATATTTCAAAGATCCTTTTCATAATTACAGT
ATGTGGCCCCTAGAAGGGAGGTCAAAAATAAGATCGCCCTGGTGGCTTCA
AAAATAGACGAATCTAAAATATATTTCCTCAAAAACAAATTTCAGTCTTT
CTATTTTCCTTCCCTCCTTCCCAAGAGAGTTTTTCAAAAATATTTAAGTC
GGTCACACTTTTTATTGACTCAAAGTTGTGTCACTTTTTTGAATGGCCCC
TAGAACGGAGGTTTAGAATTTAGACAATTTCTCATGATCTATTTTAGATA
TCGAAATTAAATTTTCAACATAGCTAGTTTTGAATTGTTATTTGCGTAAA
ATAATTTGATAACATTTTTACTAATCTACTAATGGTTGTTAGAATGGAGG
CTTGTGGTCCCTAGAATGGAGGTTTTGTTGAGAGGAACTCATCGACTAAA
GAGAAACAAGAAAGCCTAAGCGGCGTAAATGCAATAAAGAATTAATTACT
TTAATTTTTTGAGATAAGTAAAAATTTCTTACTGCTTGAGAAAGAAAGAT
TTGACCATATCACTCTGAGGTATTAATTAAATGTGTTCTTTTCTTACGCA
TACGCGTAATATTTTAATAGTAATAATTTAGCCTGGACTCGTTAATTGAT
AATCGCGCGCATAGGCCCCGACAAAGTCAAATTTTTTCGACCAGTTGTGT
TTTAAAGGCCCATTCCGCTGCGCGCTGGGCCAACTATTGACATTTTCTCA
ATGGCTGGTAAATACAGTTGACGCTCTCTAATTCGATCTTCAAGGGGAAT
TGGATTTTCATCGAAAAAGAGAGCTTATCAAATAAGGGAGCGTCGTTTAT
GAGAGTTTCTTGTTGACGGGGATTTTAAATTCCATCGAATAAGGGAGCCT
ATCGAATAGTAGAACGTCGAATTAGAGAGCGTCAATTGTATAGTAACTGA
ATATAATGAAAGTTGTCAACTTTTCTGAAAGATTTTATGATTTTGTATGA
TGCAAAGTTAAAATCGAAAATTCCGCTGTTGATTCAGCAAAGATTTTTTG
ATTTCTTGATGATTTTTTTTGTCAAACCACGCCCCTAAGAGCCTAGGTTG
AATTTTTTTGGAATTTTTTTTTAATACCTAAAAGTGAGGGTGGACGAACT
AGAATCAGTCTTTTATCCCCTTGGAAAAATGAAAAACACCCCCTGGAAAT
TTTTCTCAGATTACCCTCTGGAAATGTTCGTCCACCCCCTGTATGGATAT
AAAATGGAATGGGCCATTCAAAGAAAAGCTGCTGGTTAGAGAAAGAGTTT
TGATCGACTTGTGAACAACTGTAACACAAATTAACCCATTTTGAATACCA
CGGGCCTGTCCAAAAAGATTTGATTTACGGAACGCAAATTAATCGAATAT
GATATTCTTCCGAAAGCGTAAATAAATTCATTTATCTTTGATCTTGTATA
TATGTGGCTGAATATGTTTTGATGTGGTTTTTAGTAGCTTTAAGCTATAG
AGCTTATGAAAGAGATTTTATGGTAGGTTAGAAATATGCGTATCTGTATT
CTGTACTAAATTGATACACCTGTACAAAGAAATTTTTGAGCTTTGTGATC
TGAGGTTATTCTTAATTTTTATCTAAAACTTTGATCTTGGATTCCCAGGC
TACTCACTACTTGTATCATGTGGCTGCAATTAACTTGTTTACTATTTTTT
GGTTTAATTTCTTTTTGGCTCGAAACAACTCTAATTACCTCAAACGTTAC
ATTTGGTAATTAAGACATAATAAAAAGCATTAATCATTTTTAACGACTTT
TTTGCACGCATATCTTCGGAAAAATTATTTCTCTTCAAAAAAAGAATCAG
TTGATTAATTGTGGCAAATCTTAAATACCCCTGTGTCACAGACCCGCTGG
GAGCCCAGCCCCACTGGAAAGATTGACGAAAATTTCGTCCCCGGTGGGAA
AATACCTTAGAATTTCAGCCCACTTGGAAATTAATTTCTATTTCATCCCC
ATTTGAAATTCAATGCTTAAAAATTGCACTTCAAAACCATTGCCACTGAA
CTTTTTAACCTTCGAACAAAGGAATTTCTATCCCCATTGGGATTTCAATT
NTTGCCACTGAATTTTTTAACCTTCGAACAAAGGAATTTCTATCCCCATT
GGGATTTCAATTTCAATTTCTATCCCCACTGAGAAAAAAGTTCCACCGGG
AGTGTGAGACAGGGGTGTTCTTTAAAACGATGCGGCAAATGCATCTAAGC
CCACGTGGAATCTGTCTTTTTTACCGTTTCCAAAAAAGCAGCCTTGCATT
CTTGATATTCGTGACGTAATCTTTTATACCGAAACACCCGAAAAACACTG
GGCGTTTACCACCAGTTTTGATGACAATGAAACTGTTGACAAAGGCCTGG
TGTTTTTCGTGTGCTTCCTTTTAAAAGATTACGTAAATAAATACTCACAA
AATGATGAAAATAAGAACATGTTAAGAATAATTTTAGGATTGAAACTAAA
AAAAATAAGAACATCCACCCGAACGCTTCAAGAATTTTGGGTGATCTTAT
GAAAATACTAGTATTTCGCGGTTGCCATTAAGGTCTTTTTTTAATCTTTT
TTGAATAATTTTGGGATTGGTAATCTCAAGCTTGGTAATGCTTGCTGTGT
TTAAAAACTTTATTCTAAAATTAGTTGGAGAAAAATATGAGTTGTGACGC
AAAAGTTACGTAAGTTGTATAACTTTGATTGATTTGTTTCATTCCTCGAA
ACCTAAAATCACATTCGTGATTCTATTTAGAGAAATCCATATCGACAATG
TTTTACTGGTCAGAATTCCGTCACTTAATTTGTATTTTCATAAATTCTTA
ATTTTTTTTCTTTCTTTCGTTTTTCAATTAAATAATTTAGTGTCAAGAAA
TTCTGAGAAAATTTAGATTTCACTTGAACTTGTTTGGTTTTTGAGAAATT
AATTCTTTATCGTTTCTGTTAAAGGTTTTGTTTTTACATAAGTGTTTCTG
TTTCATATCAGGCACATGTGTCATATCAGTGTCTCACTATAGTTGTAATT
GTGCTGATATCAGCAAAAAATGTCTTTCTTTTTCTCTTGCTGACCAATCT
GCTACACATCCGTATCAATTCAATATCAAAAAGCTTGTTAATTAAAATTG
ATGAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTTAAAGT
TCGACTTTGTGAATTTTTTATTTTTGATGGATGTTGTTTTGATGAGCTGA
GAGATCTTTTGTCTGAGGCGAGCCCAATTTGATTTGTTGTTTTAAGGGCC
AAGCTACTCAAAAAAGAGGATCAGTCGACCGGTGAAAATTCAAAACCAAA
GTAGAATTTCAACTATAAAACCATCTAAAAATTCAATAAACACTACTACA
TTTTGACAAAAAAGCGAAATAGAAAATAAAAAAGCACAAAAAGTTCGAAT
TCATGGATCAGAGGAATGTAAAGAGATGGAAAACAGCTTCTTCAGAACAA
TAGACAGACGGCTAGTCATTATACCAGGTCCTTTGCCCTTAACCGTTTAA
GTGCCAATGTCGTATATATCATGCCTAGTTTGAGTTAGAAGAGGTTTTAA
GCAAAAAAAAGTCAAAAAATGCAAATATTTAAGATTTTGACCGTTTTTTG
ACCATTTTTGGTCGATGAGTGATCCAGGAACCTCCAAATTTGGCCCTGAT
TAACTTGATTCTGTCCTCCAGCAAGTTAGTTTGAAGTTTTACCACTCGGC
ACTTTTCTATCATTCAGTCAGGTCCGCGCAGCGGAAGTCTGCCCAAAATA
TAAGCCCCTAAACAAAAGAATTTCGTCATAGCACGCTAATTATACGACCT
TTTTAAAGCAACAACAAAAGAAATCCATTAGCTCGAAACAAACTCCCCTA
ACCGGTCATTTTTTCTAAGTTTTTTAAAGAAAATAACTAGTTCAAACTTT
AAAGGCTTATATCTCCGGATCTAGAAGAAGTAAGAAGCTCGTTGTGACGC
ATTTTTCTATTGTTTATTGGTACGGGAAAAGGACTGGGACGGTTTTAGTG
GGATAAAGCGGACAAAAAAAGCCCGCGCGGTAATTGGTGGCTACGGTCGA
AAAGGTGTATTGGGATGAAAAATAGGTCAAAAGCCACTTTTTTCAAGATT
TTGAGACAAGTAAGCTTTTAGATAAATTTTCCGAAAATATATTTTTAGTT
CGGTAAAGGATACACCATATACCACAAAAAATTTTTCAAAATATTTCTTC
TTTGACCAAACTAAGCTCTTTAAAGTTGAAATACTCTTCGTCGCAAAATT
CTTCATTTTCTTTTTCATCTAATTTTTTCACTGGAATTCATAAATTTTCA
GACTCAAGGATAGTTGGCCTAATAGAAAATGTATAACGTGTCAAAGCTTT
GTTAGCTACATCACGCAGAAGATTATATTTAGTTCATGACAAATATCAAA
ATTCACTATGGTCAGAGCCCTTAAGACTTATGACCTTAGGATGTGAGGAT
TCAAAAGTTCAAAAATAGTCCAATAAGGCTCTGAATATAGCCTGGAAGTC
TGCAAACCCCTCCCAAATTGAAATATTCTATTAAATTAAAGAGATAGCCC
AAAGTCGACTTTCTCGCCGGAACTTTCAATCTTGAAAAGCGTTAAAATAA
CCGGAATTCTCAATATATTTCAACCATGATTGTAATAATACACATTTTTC
ATNACGTTAAAATAACCGGAATTCTCAATATAATTCAACCATGATTGTAA
TAATTAACATTTTTCATAAGAGCATCCAAAATTTTTGAAGCCTTCGGATG
TTCTTATTTGAGTTTTAAGCCGGAAAATGTTCTTATAAAAGAACGTGTAG
CCTCAATAAAAATCCTACCCTAATCCAACCCTAAAGTTTCCTTTTTTTTG
AAAATGAAATATAATTATTTTTATCTTGAAATTGACAGGAAGATTGAAAA
ATAAGAAATAAAAGAATTTTATGAAAGGAGGTTTGGTTAAAATTACAAAT
CAATATGTCTAAAAGGATTTTAGAAATGAGTAATAAAGCGGAGTTTACAG
CCGTAATTGCGGTATACGGGAAAAAATTGGTTGTAGAGTTTCGAAGAAGA
GTTTTCAGCTGCAATTGTAGACGGTTTTTTAACCCTTAGTGCAGAGTTCT
GCTATTTATCAGGTGTGTGAATTTTCCTCGCCTTTGGGCTCTTTCTTTAC
AATTGCACAAAGTTTAAAAATAATCGCAACGAGGAATTTCAAAGATCAGA
TAAAAATATTTACTTATTATAATTTTTACAGACGAGAATTGATATATTTT
TTGAATGAAATGAATTTAAGCAAAGCTTCTTCTTCCTTGTGATTGTGTAT
CAGAGTATTAAAGAAAATTGAGACAGTAATAATCTTTAAAAGATTCTAAT
ATTATATAATATTATAAATTATATAATAAATTCTTCAATAAAATAATAAG
AAAATTTTGTACGGTGAGAGCTGTTTGGATGTCTTATAACGGAGCGCAAG
GTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAAGATTTCCAAAATGGT
ACTTGATGCCTCTCTGCTGGATGCTCAGCAATTAAAACAAGGATCAAGGG
TAAGTGGAGCAATCCAGGGAGAATGAGTAGCGCCCTCCCCTACCTTCGGG
TAGACCGAAAGAGGAGCCTTTCGGGTGGCCTCTGACTGCATTCGCAGACT
TACTTACTTATACCGTTGTTTCTCTTATGCGATACGGAAAATTACATTGC
AGTCTCTGTTACTCAAACACGCACTGGGAACACAAATCTTCTTAAGTTAA
GGAAATTTCGAATTTGGCCGTCGAAGCCTTATGTTCAAAAGTTTGTTCTT
ATAAAAAAGGTGTATTCCACTGGTAATTTCCCCTCCTCAAAAATCAATGT
TGTTATTGAACGTCCCCACAACATTGCTATCGGACCAGGATTGTTGTTTA
GATGCTCTTCACATTTCTTATAACAAGAAAGTTTATAAGAACATAGAACT
CTGATGTCAGAAGTAAGAATAAGATAAAAATCCCGTAATGACGGGTGAAA
ACTCCGGTAATTTTCTTTTTGAATAGTCATGGATTTATCATAGAACTCTG
GATAAACATCAAATAAAACGGTGGAGAGCGAACTATTGGCTTTCCATTGT
TTTAGAAAACAATCGATGTTCTAGCTTTGTCCGCAAAGGACAACTGTCAT
GGCGGCTCGAAGGTCCCTGATTTTAAAAAATGATTAATAATCCCATTTCT
AAAAAGTCCTGTAACTTCTTGTTTTTGTATATTTACCGGATGCAACTTTG
AAAATGAAAGCAAGAAAGCTTAACTAATACATTTATGAAATTAAATGTGA
AAAAAACTTCACCAAACAAGAAAAATTGAGTAAAAAGCCTAGAATGAAGC
TGAAAATAAGGTTGGCAATATCTTTCCAATTTTTTCCTGGGAAGAGCTAG
GATTGACATATGTTAGACTGGAGTATCTTGGCTTCATAGTGATATGAAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTTCTGGTG
TTAACATTCAATTTCTTATACATAGCATGTTTGTCGCATCTTTCTCACAG
CTTGAAACGTCATAACGACATATCATTAGCAATCAATTTTTTTATTATTT
ATTAAATTCTCTTTCATCACCAATACGGTTTGGTATATATATGTTATGCC
CCTAAAAATTTGATGCATTTGACTCTCTTGAGAGATCTTTAAGTCTCATT
TGGGAATTGTATAGCTGTGTTTTGATGAAAAATGCAATAAAAAAAAATTA
CGAAAAATTATTAGTGAACGGAGGAGGGTGAACAATAATGTCATTACTGC
GGACAAGGCTAGAACATGAGAAATCGATGAAAAACCAGCTCGTTGTGTAT
CCAGAGTTCTATGATAAATCCATGGAATAGTAAACCATTAAGTTAACATC
TCTATCGTGGTCAGCCTTTCTTAATATATCTAACATAAAATTTAAAAGAG
TATATCCTAGTAAGTGCGATTGCGAACACAAACCAAATCGGGAAATCAAA
CCGGAAAGATCTGGACATCGAACCCGATTACCGCGATTAATCGGATTTAC
GCACGATTACAAATGAAAAACAATGATTTTAAGAAACTCCTTAACCGGAG
TTTAATAAGAAGATTTTTAGTCTTTGCGACCTCTTAATCACCCAACATCT
TAGAAAATGGCACAAAAATACTGGTGAAAAAATAGGAAATTTTGGATGTT
CTAATAAAAGATACTTCACTAAATCTCTCGGTGCTATTTATACGGAGGAG
CTAATGCAATTTAGGTTCAGACGCTTTCACATACAATCCAATCTACACGA
CTTTTTTTAATTCTATTAGAACACGAGGCTGATAATTGGCCAAAACCTTG
ACAATAAATTAAAAAAAAATCTGAGAGACTCAGCTCTAGTGAATATTTAA
GAACAAACTAAATAAGACCAAGTCCAAGATGTTCTAAAGAACATTTTAAG
AACAACTAAAGCCTGAGAATTTCAAAAAATTAAGAAAAAGCCCAGCCTGA
TAGCCAAAATTTACTGGCTCTCATAAAAAATGTGTCTCAATCAGGCAGGC
TCATAACCTTTCACACAAGCTGGGTAACCAATCATATCCAAAAACAATTC
TTGAAGGGAAATTCCTTGTCGTATGTGGCTTGGGTTTTCCTGTTTATTTC
AAAACTTAAAATTGCTTTTTATCCCAGTTACCTTGGTAACTGCTAAAAAC
CTCCCACGGTATAAACAAGCTAATTTCCCCGAAATTTTTGTACGTTTCGA
CATTACGTCAGANAAAAACCTCCCACGGAATAAACAAGCTAATTTTCCCG
AAATTTTTGTACGTTTCGACATTACGTCAGAATCACACAAAAATGATAGA
TTCTTTTCGTAGGTGTTTGAGATGATTAATTGGGTAATGATAATGAGCTT
ATTAATGGAAAAGGCAAGCCTAATTTACCCTCACAAAGGAATGCAATTGC
CTTTAAAGAAAAACCATTAAATCAATCAATTAAATACATTCAACACGGTT
CAATTATACCAATTGGCTGGTATTTTTGTTCACAACATTTTAATTTGGCT
TCATTTACATAAATGTTTGCTTCGAGTTAAGAAGCCTTGAGAGCAATGCA
GTTTGAAAACGATTTTTTTTGCAGTTTTTGCAAGTCTACTTTTATAATCG
AACGCTCAATACAAAAATACATTAATGTATTAATGAGGCAGCCACTTAAG
AGTTTCTAGCCAGTGAGATCAAAGAGATTGCTGAGCCGTGAAAAGTACTT
ACTCAGCTGGCTAGAAATATCGAAGCCATTGTAGTAGCGTAGCCAAAGGG
GGCGCAAAATTTGTGTAGGTGAGCAGATTATGATTCTAATAGATAATAGA
TTCATGGTATTAATAGAAAATTACAATCTGCTAAAAATCTGCTATCCTAC
ACAAATAGACCTTATCGGAGTTAAGTTAATTACAATAGAAATCTCTTAGG
AATTCCTCGAGGGAATTCTATTGTAATGCACTCGAAACAATCCCACAATG
CATCGCTTTTTCAGAAAAATCAAAAACTCCCATAAGGTCTATTTTGCACG
CCCCTTGGTTACGCTACGTGGTACAGGAGAAAGTTGTTCTTTCTTTCATG
TGAAAAAGTATTTTTTAGGAGAATGGTAGGAGATGTGTTAAAGGGACATT
AAAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGCGGATACAAAATC
AAAACAAATGTCACATGTCAAAATAAAAAATGAAACCAAATATGGCTAAT
TTTGATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAAT
TGTTCTCTTTAATGACACGTGGCTGGTGCAATGTTTACATTTTACTACTT
TAATTTCCCTGTAAATGGTGTTCTTTAAACTTAACATTTGATGTTTTTTT
CTAGGAAAGTAACAAAACCAAAATGATGAACGCAACATCAAATAACCTGT
CTATAGACGAAAAAATGAACCCAAACCAAACTATAGATTTAGAATTATCA
CTTATTGGATTTGGTCTGGTCGTCTTGAGTTTTTCAATTATGATCCCAAA
CGCAATTGTCATCTACGTTTTCAAAGCAACAAAAAAACTACAAAAGCCCA
AATATTATTTTATACTTTCCCTAGCTGTAGCAGATCTACTCGTGGGTTTG
ATTTCAATAAATCCTTATACCATTTTACTAATGATTGGTCACTGGCCGCT
AGGCTCGGGTTTCTGCTACACATGGTTGGTTTTAGATCACTATCTAATAA
CAGTATCAAATCTTTGTCTCATTTTCATCGCATTTGATCGATTTGGATCG
ATATTTCACCCGATGACTCATAAAGTGAAATGCGATGCTCGATTCATGAA
ACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTGGTCTGGCCGCTAC
CCATCCTGATCTACCCCTATACTGAGGAAGACCCTGATAGATTCATGGCA
TCGAGCGAATGTTACGTACATTTCTATCAAAATGATATTACTGTAACATC
TATAGTTGTAGTCTTGAGCTATATCGCTCCCTGCATTATATTACTGGTAA
TTTATTTATGTATATGGAAACGGATTTCAAGTATCAGTGGAGGTGAAAAG
AAAATCTATGTTATACCAGACAAAGCAGTCGAGTATCTAGCCTCACTTTC
TACTATTGCAGATGACTTTGGTAATAAGAAAGGACATATTAACCAGGGGT
TTAATATAAAGGACGAGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTAAACTTAA
CATTTGATGTTTTTTAGGAAAGTAACAACAACAAAACAAAAATGACGAAC
GCAACATCGAATAACGAAGAAATGAACTCAAATCAAACTATAGATTTAGA
ATTATCACTGATTGGATTTGGTCTGGTCGTCATGAGTCTTTCAATCATAA
TCCCAAACGCCATTGTCATCTACGTTTTCAAAACAAAAAAAAAACTACAA
AAACCAAAATATTATTTTATACTTTCCCTAGCTGTAGCGGATCTACTAGT
GGGTTTTTCAATAAATCCTTATACTATTTTACTAATGATTGGTCACTGGC
CACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTTTAGATCACTATATA
GGAACAGCATCGAACTTTTGTCTCATTTTTATCGCATTTGATCGATTTGG
ATCGATATTTTACCCGATGACTCATAAAGTGAAATGCGATGCTCGATTCA
TGAAACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTGGTCTGGCCG
CTACCCATCCTGATCTACCCTTATACTGAGGAAGACCCTGATAGAGTCAT
GGCATCGAGCGAATGTTACGTACATTTCTATCAAAATGATATTACTGTAA
CATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCTGTATTATATTACTG
GTAATTTATTTATGTATATGGAGACGGATTTCAAGAATCAGTGGAGGTGA
AAAGAAAATCTATGTTATACCAGACAAAGCAGTCGAGTATCTAGCCTCAC
TTTCTACTATTGCAGATGACTTTGGTAATAAGAAAGGACATATTAACCAG
GGGTTTAATATAAAGGACGAGAACATCAATTTAACTATGGAAGATTCTCT
AGATAGTGTTAATAATACCAGCCAAAGAGATTCTCGGGTCAACTCTTTGG
ATAAGATAGACGTAAAGAAGGAAGAAAAACATGTTAAAGATGGTAAAAGG
ATGAGATTCTCAACACTTTCAGAAACATTATTGCTATCACCAAGACCAAG
ATCTGCCACTGCGACGACAAAGCTTGAGAACCATAACGAGTTACAATCTA
CTACTACTCAAACAGCACCAAAACGACAACGAAGATTCACTTTAAATACG
TTAGACTTTCATATGAAACTTGGATTTAATTCACCAGTAGGGAAAAAACG
TGATAGAACATCCAATATTTCCCTTTTTGGGGAACGAAAGACTTCATGTG
AACGAAAAATGGATAAATGTAGACAAAAGAATAAAAGGAGTGCTTTAAAA
TGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGTTGGTTTCCATATCA
TATAACTGTACTAGCAAGATCAATCTTAAAGACATCTTTACCAGAGCCTT
TATGGAGATTTTGCTACATCTTTGGTTGGCTGAACTCACTTTTTAATCCC
GTTTGCTATGCATTTGCTAACCGTGGATTTAAAGATCAGGTTAAAGAGAT
TTTCTGAAAAAAAGATAAACGCATTGATTTTGGTTCCCCAGGTGACTGTC
CGCAATAATCATTAATTTATAAGTCTTGCTGAATTTAATTTTGTAAATAT
ACTACTATGCTACTATGTATACATTATATATTATATTTTGTAAATACCGG
TTACTCAAAAAAAAGCTTAAGATAACTTTTAAACACAATT Coding sequence (CDS) from alignment at scaffold_359:98429..110968- >TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_359:98429..110968- (Clytia hemisphaerica)
ATGACGAACGCAACATCGAATAACGAAGAAATGAACTCAAATCAAACTAT
AGATTTAGAATTATCACTGATTGGATTTGGTCTGGTCGTCATGAGTCTTT
CAATCATAATCCCAAACGCCATTGTCATCTACGTTTTCAAAACAAAAAAA
AAACTACAAAAACCAAAATATTATTTTATACTTTCCCTAGCTGTAGCGGA
TCTACTAGTGGGTTTTTCAATAAATCCTTATACTATTTTACTAATGATTG
GTCACTGGCCACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTTTAGAT
CACTATATAGGAACAGCATCGAACTTTTGTCTCATTTTTATCGCATTTGA
TCGATTTGGATCGATATTTTACCCGATGACTCATAAAGTGAAATGCGATG
CTCGATTCATGAAACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTG
GTCTGGCCGCTACCCATCCTGATCTACCCTTATACTGAGGAAGACCCTGA
TAGAGTCATGGCATCGAGCGAATGTTACGTACATTTCTATCAAAATGATA
TTACTGTAACATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCTGTATT
ATATTACTGGTAATTTATTTATGTATATGGAGACGGATTTCAAGAATCAG
TGGAGGTGAAAAGAAAATCTATGTTATACCAGACAAAGCAGTCGAGTATC
TAGCCTCACTTTCTACTATTGCAGATGACTTTGGTAATAAGAAAGGACAT
ATTAACCAGGGGTTTAATATAAAGGACGAGAACATCAATTTAACTATGGA
AGATTCTCTAGATAGTGTTAATAATACCAGCCAAAGAGATTCTCGGGTCA
ACTCTTTGGATAAGATAGACGTAAAGAAGGAAGAAAAACATGTTAAAGAT
GGTAAAAGGATGAGATTCTCAACACTTTCAGAAACATTATTGCTATCACC
AAGACCAAGATCTGCCACTGCGACGACAAAGCTTGAGAACCATAACGAGT
TACAATCTACTACTACTCAAACAGCACCAAAACGACAACGAAGATTCACT
TTAAATACGTTAGACTTTCATATGAAACTTGGATTTAATTCACCAGTAGG
GAAAAAACGTGATAGAACATCCAATATTTCCCTTTTTGGGGAACGAAAGA
CTTCATGTGAACGAAAAATGGATAAATGTAGACAAAAGAATAAAAGGAGT
GCTTTAAAATGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGTTGGTT
TCCATATCATATAACTGTACTAGCAAGATCAATCTTAAAGACATCTTTAC
CAGAGCCTTTATGGAGATTTTGCTACATCTTTGGTTGGCTGAACTCACTT
TTTAATCCCGTTTGCTATGCATTTGCTAACCGTGGATTTAAAGATCAGGT
TAAAGAGATTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061531-exon-scaffold_359-1575043694:110938..110968 | TCONS_00061531-exon-scaffold_359-1575043694:110938..110968 | Clytia hemisphaerica | exon |
| TCONS_00061531-exon-scaffold_359-1575043694:98429..100051 | TCONS_00061531-exon-scaffold_359-1575043694:98429..100051 | Clytia hemisphaerica | exon |
| TCONS_00061531-exon-scaffold_359-1510915933:110938..110968 | TCONS_00061531-exon-scaffold_359-1510915933:110938..110968 | Clytia hemisphaerica | exon |
| TCONS_00061531-exon-scaffold_359-1510915933:98429..100051 | TCONS_00061531-exon-scaffold_359-1510915933:98429..100051 | Clytia hemisphaerica | exon |
| TCONS_00061531-exon-scaffold_359-1491911889:110938..110968 | TCONS_00061531-exon-scaffold_359-1491911889:110938..110968 | Clytia hemisphaerica | exon |
| TCONS_00061531-exon-scaffold_359-1491911889:98429..100051 | TCONS_00061531-exon-scaffold_359-1491911889:98429..100051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:98429..110968 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00061531 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 3.857e-31 Identity = 127/472 (26.91%), Postives = 202/472 (42.80%), Query Frame = 2
Query: 50 TKMTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFXXXXXXXXXXYYFILSLAVADLLVG-FSINPYTILLMIGHWPLGRGLCYTWLVLDHYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVXXXXXXXXXXXXXXXXXXXXTEEDPDRVMASSECYVHFYQNDITVTSTVVVLSYFAPCIILLVIYLCIWRRISRISGGEKKIYVIPDKAVEYLASLSTIADDFGNKKGHINQGFNIKDENINLTMEDSLDSVNNTSQRDSRVNSLDKIDVKKEEKHVKDGKRMRFSTLSETLLLSPRPRSATATTKLENHNELQSTTTQTAPKRQRRFTLNTLDFHMKLGFNSPVGKKRDRTS-NISLFGERKTSCERKMDKCRQKNKRSALKWILLVSTAFFICWFPYHITVLARSILKTSLPEPLWRFCYIFGWLNSLFNPVCYAFANRGFKDQVK 1459
T A S N + + +++ IG ++SL+ + N +V+ FK +L+ YF+LSLA ADL++G FS+N YT L++GHW LG C WL LD+ AS L+ I+FDR+ S+ P++++ K R + +++ V I + +R + + +CY+ F I +T + +++ P ++ +Y WR IY + LA+L G++ G + E E S ++ R R L + KEE+ +G M T SE P S E Q+ T Q R + NT+ P K RDR G+ + + + ++K L ILL AF + W PY+I VL + K +PE LW Y ++NS NP+CYA N+ F+D +
Sbjct: 3 TSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPR--RAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQPI-ITFGTAMAAFYLPVTVMCTLY---WR-----------IYRETENRARELAALQ------GSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGS-MESLTSSE----GEEPGSEVVIKMPMVDPEAQAPTKQPP-----RSSPNTV--------KRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILL---AFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFR 430
The following BLAST results are available for this feature:
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