TCONS_00061531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061531
Unique NameTCONS_00061531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=transcript|length=1654bp
AAACCGATGACACAAGCTTAGATTTCATTATgaaagtaacaacaacaaaa
caaaaatgacgAACGCAACATCGAATAACGAAGAAATGAACTCAAATCAA
ACTATAGATTTAGAATTATCACTGATTGGATTTGGTCTGGTCGTCATGAG
TCTTTCAATCATAATCCCAAACGCCATTGTCATCtacgttttcaaaacaa
aaaaaaaactacaaaaaccaaaatattattttatactTTCCCTAGCTGTA
GCGGATCTACTAGTGGGTTTTTCAATAAATCCTTATACTATTTTACTAAT
GATTGGTCACTGGCCACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTT
TAGATCACTATATAGGAACAGCATCGAACTTTTGTCTCATTTTTATCGCA
TTTGATCGATTTGGATCGATATTTTACCCGATGACTCATAAAGTGAAATG
CGATGCTCGATTCATGAAACGATGTGTGATTCTTATATGGTTGCTACCAG
TTTTGGTCTGGCCGCTACCCATCCTGATCTACCCTTATACTGAGGAAGAC
CCTGATAGAGTCATGGCATCGAGCGAATGTTACGTacatttctatcaaaa
tgataTTACTGTAACATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCT
GTATTATATTACTGGTAATTTATTTATGTATATGGAGACGGATTTCAAGA
ATCAGTGGAGGTGAAAAGAAAATCTATGTTATACCAGACAAAGCAGTCGA
GTATCTAGCCTCACTTTCTACTATTGCAGATGACTTTGGTAATAAGAAAG
GACATATTAACCAGGGGTTTAATATAAAGGACGAGAACATCAATTTAACT
ATGGAAGATTCTCTAGATAGTGTTAATAATACCAGCCAAAGAGATTCTCG
GGTCAACTCTTTGGATAAGATAGACGTaaagaaggaagaaaaacaTGTTA
AAGATGGTAAAAGGATGAGATTCTCAACACTTTCAGAAACATTATTGCTA
TCACCAAGACCAAGATCTGCCACTGCGACGACAAAGCTTGAGAACCATAA
CGAGTTACAATCTACTACTACTCAAACAGCACCAAAACGACAACGAAGAT
TCACTTTAAATACGTTAGACTTTCATATGAAACTTGGATTTAATTCACCA
GTAGGGAAAAAACGTGATAGAACATCCAATATTTCCCTTTTTGGGGAACG
AAAGACTTCATGTGAACGAAAAATGGATAAATGTAGACAAAAGAATAAAA
GGAGTGCTTTAAAATGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGT
TGGTTTCCATATCATATAACTGTACTAGCAAGATCAATCTTAAAGACATC
TTTACCAGAGCCTTTATGGAGATTTTGCTACATCTTTGGTTGGCTGAACT
CACTTTTTAATCCCGTTTGCTATGCATTTGCTAACCGTGGATTTAAAGAT
CAGGTTAAagagattttctgaaaaaaagataaacGCATTGATTTTGGTTC
CCCAGGTGACTGTCCGCAATAATCATTAATTTATAAGTCTTGctgaattt
aattttgtaaatatacTACTATGCTACTATGTAtacattatatattatat
tttgtaAATACCGGTTACTCAAAAAAAAGCttaagataacttttaaacac
AATT
Run BLAST on NCBI

protein sequence of TCONS_00061531-protein

>TCONS_00061531-protein ID=TCONS_00061531-protein|Name=TCONS_00061531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFKTKK
KLQKPKYYFILSLAVADLLVGFSINPYTILLMIGHWPLGRGLCYTWLVLD
HYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVILIWLLPVL
VWPLPILIYPYTEEDPDRVMASSECYVHFYQNDITVTSTVVVLSYFAPCI
ILLVIYLCIWRRISRISGGEKKIYVIPDKAVEYLASLSTIADDFGNKKGH
INQGFNIKDENINLTMEDSLDSVNNTSQRDSRVNSLDKIDVKKEEKHVKD
GKRMRFSTLSETLLLSPRPRSATATTKLENHNELQSTTTQTAPKRQRRFT
LNTLDFHMKLGFNSPVGKKRDRTSNISLFGERKTSCERKMDKCRQKNKRS
ALKWILLVSTAFFICWFPYHITVLARSILKTSLPEPLWRFCYIFGWLNSL
FNPVCYAFANRGFKDQVKEIF
Run BLAST on NCBI

transcript from alignment at scaffold_359:98429..110968-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=transcript|length=12540bp|location=Sequence derived from alignment at scaffold_359:98429..110968- (Clytia hemisphaerica)
AAACCGATGACACAAGCTTAGATTTCATTATGTAAGTTTGATTCTTTTCC GTTATTTTATTGTCTTGTGGCTCAATTTGAAATGTTCTATAATTTCTCAC TCGTCATTTTACTGGACTAACCCTTTAACTGCCGAATGTCGGCATATGCG GGTATGGGCACTTTCCATTTCTTTGCCACGGTTTTTTTTAAGTTTATTGA AAATTTCGATTTTGAACTAGATTTCATTCAATACACGCTTTTTTTTTTAT TATAAGAATACACTATAAGAATGTCCATGATGAAAATAGCTAAAAAATTA AGAATAACGCTAAGAATATCACCATCAAGGAATTTTGCTACTCAAGTTAA GAATGCCATTTATAGAGCATTTTCAATTATAAGTTGTCAATTACCCCCAA GCAAGGCTCACTCCTTTCACAAAAATACAATTTTATGCTTGAGACGTATG TTCTAAATGTTAAATCTAGTCTGAATTAGGATCCTAACCTAAGAATGCTG TAAGAATATTTTAGGATGATTTTCCTAAAAAAAGTTAAGAATATCCATGA TGAAATGGATTTACTCCATTCTTATAAAAAAAGAGCGTGTAGCACAGTCA CAGTTGAATAATTAAAATTATATTTCAAAGATCCTTTTCATAATTACAGT ATGTGGCCCCTAGAAGGGAGGTCAAAAATAAGATCGCCCTGGTGGCTTCA AAAATAGACGAATCTAAAATATATTTCCTCAAAAACAAATTTCAGTCTTT CTATTTTCCTTCCCTCCTTCCCAAGAGAGTTTTTCAAAAATATTTAAGTC GGTCACACTTTTTATTGACTCAAAGTTGTGTCACTTTTTTGAATGGCCCC TAGAACGGAGGTTTAGAATTTAGACAATTTCTCATGATCTATTTTAGATA TCGAAATTAAATTTTCAACATAGCTAGTTTTGAATTGTTATTTGCGTAAA ATAATTTGATAACATTTTTACTAATCTACTAATGGTTGTTAGAATGGAGG CTTGTGGTCCCTAGAATGGAGGTTTTGTTGAGAGGAACTCATCGACTAAA GAGAAACAAGAAAGCCTAAGCGGCGTAAATGCAATAAAGAATTAATTACT TTAATTTTTTGAGATAAGTAAAAATTTCTTACTGCTTGAGAAAGAAAGAT TTGACCATATCACTCTGAGGTATTAATTAAATGTGTTCTTTTCTTACGCA TACGCGTAATATTTTAATAGTAATAATTTAGCCTGGACTCGTTAATTGAT AATCGCGCGCATAGGCCCCGACAAAGTCAAATTTTTTCGACCAGTTGTGT TTTAAAGGCCCATTCCGCTGCGCGCTGGGCCAACTATTGACATTTTCTCA ATGGCTGGTAAATACAGTTGACGCTCTCTAATTCGATCTTCAAGGGGAAT TGGATTTTCATCGAAAAAGAGAGCTTATCAAATAAGGGAGCGTCGTTTAT GAGAGTTTCTTGTTGACGGGGATTTTAAATTCCATCGAATAAGGGAGCCT ATCGAATAGTAGAACGTCGAATTAGAGAGCGTCAATTGTATAGTAACTGA ATATAATGAAAGTTGTCAACTTTTCTGAAAGATTTTATGATTTTGTATGA TGCAAAGTTAAAATCGAAAATTCCGCTGTTGATTCAGCAAAGATTTTTTG ATTTCTTGATGATTTTTTTTGTCAAACCACGCCCCTAAGAGCCTAGGTTG AATTTTTTTGGAATTTTTTTTTAATACCTAAAAGTGAGGGTGGACGAACT AGAATCAGTCTTTTATCCCCTTGGAAAAATGAAAAACACCCCCTGGAAAT TTTTCTCAGATTACCCTCTGGAAATGTTCGTCCACCCCCTGTATGGATAT AAAATGGAATGGGCCATTCAAAGAAAAGCTGCTGGTTAGAGAAAGAGTTT TGATCGACTTGTGAACAACTGTAACACAAATTAACCCATTTTGAATACCA CGGGCCTGTCCAAAAAGATTTGATTTACGGAACGCAAATTAATCGAATAT GATATTCTTCCGAAAGCGTAAATAAATTCATTTATCTTTGATCTTGTATA TATGTGGCTGAATATGTTTTGATGTGGTTTTTAGTAGCTTTAAGCTATAG AGCTTATGAAAGAGATTTTATGGTAGGTTAGAAATATGCGTATCTGTATT CTGTACTAAATTGATACACCTGTACAAAGAAATTTTTGAGCTTTGTGATC TGAGGTTATTCTTAATTTTTATCTAAAACTTTGATCTTGGATTCCCAGGC TACTCACTACTTGTATCATGTGGCTGCAATTAACTTGTTTACTATTTTTT GGTTTAATTTCTTTTTGGCTCGAAACAACTCTAATTACCTCAAACGTTAC ATTTGGTAATTAAGACATAATAAAAAGCATTAATCATTTTTAACGACTTT TTTGCACGCATATCTTCGGAAAAATTATTTCTCTTCAAAAAAAGAATCAG TTGATTAATTGTGGCAAATCTTAAATACCCCTGTGTCACAGACCCGCTGG GAGCCCAGCCCCACTGGAAAGATTGACGAAAATTTCGTCCCCGGTGGGAA AATACCTTAGAATTTCAGCCCACTTGGAAATTAATTTCTATTTCATCCCC ATTTGAAATTCAATGCTTAAAAATTGCACTTCAAAACCATTGCCACTGAA CTTTTTAACCTTCGAACAAAGGAATTTCTATCCCCATTGGGATTTCAATT NTTGCCACTGAATTTTTTAACCTTCGAACAAAGGAATTTCTATCCCCATT GGGATTTCAATTTCAATTTCTATCCCCACTGAGAAAAAAGTTCCACCGGG AGTGTGAGACAGGGGTGTTCTTTAAAACGATGCGGCAAATGCATCTAAGC CCACGTGGAATCTGTCTTTTTTACCGTTTCCAAAAAAGCAGCCTTGCATT CTTGATATTCGTGACGTAATCTTTTATACCGAAACACCCGAAAAACACTG GGCGTTTACCACCAGTTTTGATGACAATGAAACTGTTGACAAAGGCCTGG TGTTTTTCGTGTGCTTCCTTTTAAAAGATTACGTAAATAAATACTCACAA AATGATGAAAATAAGAACATGTTAAGAATAATTTTAGGATTGAAACTAAA AAAAATAAGAACATCCACCCGAACGCTTCAAGAATTTTGGGTGATCTTAT GAAAATACTAGTATTTCGCGGTTGCCATTAAGGTCTTTTTTTAATCTTTT TTGAATAATTTTGGGATTGGTAATCTCAAGCTTGGTAATGCTTGCTGTGT TTAAAAACTTTATTCTAAAATTAGTTGGAGAAAAATATGAGTTGTGACGC AAAAGTTACGTAAGTTGTATAACTTTGATTGATTTGTTTCATTCCTCGAA ACCTAAAATCACATTCGTGATTCTATTTAGAGAAATCCATATCGACAATG TTTTACTGGTCAGAATTCCGTCACTTAATTTGTATTTTCATAAATTCTTA ATTTTTTTTCTTTCTTTCGTTTTTCAATTAAATAATTTAGTGTCAAGAAA TTCTGAGAAAATTTAGATTTCACTTGAACTTGTTTGGTTTTTGAGAAATT AATTCTTTATCGTTTCTGTTAAAGGTTTTGTTTTTACATAAGTGTTTCTG TTTCATATCAGGCACATGTGTCATATCAGTGTCTCACTATAGTTGTAATT GTGCTGATATCAGCAAAAAATGTCTTTCTTTTTCTCTTGCTGACCAATCT GCTACACATCCGTATCAATTCAATATCAAAAAGCTTGTTAATTAAAATTG ATGAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTTAAAGT TCGACTTTGTGAATTTTTTATTTTTGATGGATGTTGTTTTGATGAGCTGA GAGATCTTTTGTCTGAGGCGAGCCCAATTTGATTTGTTGTTTTAAGGGCC AAGCTACTCAAAAAAGAGGATCAGTCGACCGGTGAAAATTCAAAACCAAA GTAGAATTTCAACTATAAAACCATCTAAAAATTCAATAAACACTACTACA TTTTGACAAAAAAGCGAAATAGAAAATAAAAAAGCACAAAAAGTTCGAAT TCATGGATCAGAGGAATGTAAAGAGATGGAAAACAGCTTCTTCAGAACAA TAGACAGACGGCTAGTCATTATACCAGGTCCTTTGCCCTTAACCGTTTAA GTGCCAATGTCGTATATATCATGCCTAGTTTGAGTTAGAAGAGGTTTTAA GCAAAAAAAAGTCAAAAAATGCAAATATTTAAGATTTTGACCGTTTTTTG ACCATTTTTGGTCGATGAGTGATCCAGGAACCTCCAAATTTGGCCCTGAT TAACTTGATTCTGTCCTCCAGCAAGTTAGTTTGAAGTTTTACCACTCGGC ACTTTTCTATCATTCAGTCAGGTCCGCGCAGCGGAAGTCTGCCCAAAATA TAAGCCCCTAAACAAAAGAATTTCGTCATAGCACGCTAATTATACGACCT TTTTAAAGCAACAACAAAAGAAATCCATTAGCTCGAAACAAACTCCCCTA ACCGGTCATTTTTTCTAAGTTTTTTAAAGAAAATAACTAGTTCAAACTTT AAAGGCTTATATCTCCGGATCTAGAAGAAGTAAGAAGCTCGTTGTGACGC ATTTTTCTATTGTTTATTGGTACGGGAAAAGGACTGGGACGGTTTTAGTG GGATAAAGCGGACAAAAAAAGCCCGCGCGGTAATTGGTGGCTACGGTCGA AAAGGTGTATTGGGATGAAAAATAGGTCAAAAGCCACTTTTTTCAAGATT TTGAGACAAGTAAGCTTTTAGATAAATTTTCCGAAAATATATTTTTAGTT CGGTAAAGGATACACCATATACCACAAAAAATTTTTCAAAATATTTCTTC TTTGACCAAACTAAGCTCTTTAAAGTTGAAATACTCTTCGTCGCAAAATT CTTCATTTTCTTTTTCATCTAATTTTTTCACTGGAATTCATAAATTTTCA GACTCAAGGATAGTTGGCCTAATAGAAAATGTATAACGTGTCAAAGCTTT GTTAGCTACATCACGCAGAAGATTATATTTAGTTCATGACAAATATCAAA ATTCACTATGGTCAGAGCCCTTAAGACTTATGACCTTAGGATGTGAGGAT TCAAAAGTTCAAAAATAGTCCAATAAGGCTCTGAATATAGCCTGGAAGTC TGCAAACCCCTCCCAAATTGAAATATTCTATTAAATTAAAGAGATAGCCC AAAGTCGACTTTCTCGCCGGAACTTTCAATCTTGAAAAGCGTTAAAATAA CCGGAATTCTCAATATATTTCAACCATGATTGTAATAATACACATTTTTC ATNACGTTAAAATAACCGGAATTCTCAATATAATTCAACCATGATTGTAA TAATTAACATTTTTCATAAGAGCATCCAAAATTTTTGAAGCCTTCGGATG TTCTTATTTGAGTTTTAAGCCGGAAAATGTTCTTATAAAAGAACGTGTAG CCTCAATAAAAATCCTACCCTAATCCAACCCTAAAGTTTCCTTTTTTTTG AAAATGAAATATAATTATTTTTATCTTGAAATTGACAGGAAGATTGAAAA ATAAGAAATAAAAGAATTTTATGAAAGGAGGTTTGGTTAAAATTACAAAT CAATATGTCTAAAAGGATTTTAGAAATGAGTAATAAAGCGGAGTTTACAG CCGTAATTGCGGTATACGGGAAAAAATTGGTTGTAGAGTTTCGAAGAAGA GTTTTCAGCTGCAATTGTAGACGGTTTTTTAACCCTTAGTGCAGAGTTCT GCTATTTATCAGGTGTGTGAATTTTCCTCGCCTTTGGGCTCTTTCTTTAC AATTGCACAAAGTTTAAAAATAATCGCAACGAGGAATTTCAAAGATCAGA TAAAAATATTTACTTATTATAATTTTTACAGACGAGAATTGATATATTTT TTGAATGAAATGAATTTAAGCAAAGCTTCTTCTTCCTTGTGATTGTGTAT CAGAGTATTAAAGAAAATTGAGACAGTAATAATCTTTAAAAGATTCTAAT ATTATATAATATTATAAATTATATAATAAATTCTTCAATAAAATAATAAG AAAATTTTGTACGGTGAGAGCTGTTTGGATGTCTTATAACGGAGCGCAAG GTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAAGATTTCCAAAATGGT ACTTGATGCCTCTCTGCTGGATGCTCAGCAATTAAAACAAGGATCAAGGG TAAGTGGAGCAATCCAGGGAGAATGAGTAGCGCCCTCCCCTACCTTCGGG TAGACCGAAAGAGGAGCCTTTCGGGTGGCCTCTGACTGCATTCGCAGACT TACTTACTTATACCGTTGTTTCTCTTATGCGATACGGAAAATTACATTGC AGTCTCTGTTACTCAAACACGCACTGGGAACACAAATCTTCTTAAGTTAA GGAAATTTCGAATTTGGCCGTCGAAGCCTTATGTTCAAAAGTTTGTTCTT ATAAAAAAGGTGTATTCCACTGGTAATTTCCCCTCCTCAAAAATCAATGT TGTTATTGAACGTCCCCACAACATTGCTATCGGACCAGGATTGTTGTTTA GATGCTCTTCACATTTCTTATAACAAGAAAGTTTATAAGAACATAGAACT CTGATGTCAGAAGTAAGAATAAGATAAAAATCCCGTAATGACGGGTGAAA ACTCCGGTAATTTTCTTTTTGAATAGTCATGGATTTATCATAGAACTCTG GATAAACATCAAATAAAACGGTGGAGAGCGAACTATTGGCTTTCCATTGT TTTAGAAAACAATCGATGTTCTAGCTTTGTCCGCAAAGGACAACTGTCAT GGCGGCTCGAAGGTCCCTGATTTTAAAAAATGATTAATAATCCCATTTCT AAAAAGTCCTGTAACTTCTTGTTTTTGTATATTTACCGGATGCAACTTTG AAAATGAAAGCAAGAAAGCTTAACTAATACATTTATGAAATTAAATGTGA AAAAAACTTCACCAAACAAGAAAAATTGAGTAAAAAGCCTAGAATGAAGC TGAAAATAAGGTTGGCAATATCTTTCCAATTTTTTCCTGGGAAGAGCTAG GATTGACATATGTTAGACTGGAGTATCTTGGCTTCATAGTGATATGAAAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTTCTGGTG TTAACATTCAATTTCTTATACATAGCATGTTTGTCGCATCTTTCTCACAG CTTGAAACGTCATAACGACATATCATTAGCAATCAATTTTTTTATTATTT ATTAAATTCTCTTTCATCACCAATACGGTTTGGTATATATATGTTATGCC CCTAAAAATTTGATGCATTTGACTCTCTTGAGAGATCTTTAAGTCTCATT TGGGAATTGTATAGCTGTGTTTTGATGAAAAATGCAATAAAAAAAAATTA CGAAAAATTATTAGTGAACGGAGGAGGGTGAACAATAATGTCATTACTGC GGACAAGGCTAGAACATGAGAAATCGATGAAAAACCAGCTCGTTGTGTAT CCAGAGTTCTATGATAAATCCATGGAATAGTAAACCATTAAGTTAACATC TCTATCGTGGTCAGCCTTTCTTAATATATCTAACATAAAATTTAAAAGAG TATATCCTAGTAAGTGCGATTGCGAACACAAACCAAATCGGGAAATCAAA CCGGAAAGATCTGGACATCGAACCCGATTACCGCGATTAATCGGATTTAC GCACGATTACAAATGAAAAACAATGATTTTAAGAAACTCCTTAACCGGAG TTTAATAAGAAGATTTTTAGTCTTTGCGACCTCTTAATCACCCAACATCT TAGAAAATGGCACAAAAATACTGGTGAAAAAATAGGAAATTTTGGATGTT CTAATAAAAGATACTTCACTAAATCTCTCGGTGCTATTTATACGGAGGAG CTAATGCAATTTAGGTTCAGACGCTTTCACATACAATCCAATCTACACGA CTTTTTTTAATTCTATTAGAACACGAGGCTGATAATTGGCCAAAACCTTG ACAATAAATTAAAAAAAAATCTGAGAGACTCAGCTCTAGTGAATATTTAA GAACAAACTAAATAAGACCAAGTCCAAGATGTTCTAAAGAACATTTTAAG AACAACTAAAGCCTGAGAATTTCAAAAAATTAAGAAAAAGCCCAGCCTGA TAGCCAAAATTTACTGGCTCTCATAAAAAATGTGTCTCAATCAGGCAGGC TCATAACCTTTCACACAAGCTGGGTAACCAATCATATCCAAAAACAATTC TTGAAGGGAAATTCCTTGTCGTATGTGGCTTGGGTTTTCCTGTTTATTTC AAAACTTAAAATTGCTTTTTATCCCAGTTACCTTGGTAACTGCTAAAAAC CTCCCACGGTATAAACAAGCTAATTTCCCCGAAATTTTTGTACGTTTCGA CATTACGTCAGANAAAAACCTCCCACGGAATAAACAAGCTAATTTTCCCG AAATTTTTGTACGTTTCGACATTACGTCAGAATCACACAAAAATGATAGA TTCTTTTCGTAGGTGTTTGAGATGATTAATTGGGTAATGATAATGAGCTT ATTAATGGAAAAGGCAAGCCTAATTTACCCTCACAAAGGAATGCAATTGC CTTTAAAGAAAAACCATTAAATCAATCAATTAAATACATTCAACACGGTT CAATTATACCAATTGGCTGGTATTTTTGTTCACAACATTTTAATTTGGCT TCATTTACATAAATGTTTGCTTCGAGTTAAGAAGCCTTGAGAGCAATGCA GTTTGAAAACGATTTTTTTTGCAGTTTTTGCAAGTCTACTTTTATAATCG AACGCTCAATACAAAAATACATTAATGTATTAATGAGGCAGCCACTTAAG AGTTTCTAGCCAGTGAGATCAAAGAGATTGCTGAGCCGTGAAAAGTACTT ACTCAGCTGGCTAGAAATATCGAAGCCATTGTAGTAGCGTAGCCAAAGGG GGCGCAAAATTTGTGTAGGTGAGCAGATTATGATTCTAATAGATAATAGA TTCATGGTATTAATAGAAAATTACAATCTGCTAAAAATCTGCTATCCTAC ACAAATAGACCTTATCGGAGTTAAGTTAATTACAATAGAAATCTCTTAGG AATTCCTCGAGGGAATTCTATTGTAATGCACTCGAAACAATCCCACAATG CATCGCTTTTTCAGAAAAATCAAAAACTCCCATAAGGTCTATTTTGCACG CCCCTTGGTTACGCTACGTGGTACAGGAGAAAGTTGTTCTTTCTTTCATG TGAAAAAGTATTTTTTAGGAGAATGGTAGGAGATGTGTTAAAGGGACATT AAAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGCGGATACAAAATC AAAACAAATGTCACATGTCAAAATAAAAAATGAAACCAAATATGGCTAAT TTTGATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAAT TGTTCTCTTTAATGACACGTGGCTGGTGCAATGTTTACATTTTACTACTT TAATTTCCCTGTAAATGGTGTTCTTTAAACTTAACATTTGATGTTTTTTT CTAGGAAAGTAACAAAACCAAAATGATGAACGCAACATCAAATAACCTGT CTATAGACGAAAAAATGAACCCAAACCAAACTATAGATTTAGAATTATCA CTTATTGGATTTGGTCTGGTCGTCTTGAGTTTTTCAATTATGATCCCAAA CGCAATTGTCATCTACGTTTTCAAAGCAACAAAAAAACTACAAAAGCCCA AATATTATTTTATACTTTCCCTAGCTGTAGCAGATCTACTCGTGGGTTTG ATTTCAATAAATCCTTATACCATTTTACTAATGATTGGTCACTGGCCGCT AGGCTCGGGTTTCTGCTACACATGGTTGGTTTTAGATCACTATCTAATAA CAGTATCAAATCTTTGTCTCATTTTCATCGCATTTGATCGATTTGGATCG ATATTTCACCCGATGACTCATAAAGTGAAATGCGATGCTCGATTCATGAA ACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTGGTCTGGCCGCTAC CCATCCTGATCTACCCCTATACTGAGGAAGACCCTGATAGATTCATGGCA TCGAGCGAATGTTACGTACATTTCTATCAAAATGATATTACTGTAACATC TATAGTTGTAGTCTTGAGCTATATCGCTCCCTGCATTATATTACTGGTAA TTTATTTATGTATATGGAAACGGATTTCAAGTATCAGTGGAGGTGAAAAG AAAATCTATGTTATACCAGACAAAGCAGTCGAGTATCTAGCCTCACTTTC TACTATTGCAGATGACTTTGGTAATAAGAAAGGACATATTAACCAGGGGT TTAATATAAAGGACGAGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTAAACTTAA CATTTGATGTTTTTTAGGAAAGTAACAACAACAAAACAAAAATGACGAAC GCAACATCGAATAACGAAGAAATGAACTCAAATCAAACTATAGATTTAGA ATTATCACTGATTGGATTTGGTCTGGTCGTCATGAGTCTTTCAATCATAA TCCCAAACGCCATTGTCATCTACGTTTTCAAAACAAAAAAAAAACTACAA AAACCAAAATATTATTTTATACTTTCCCTAGCTGTAGCGGATCTACTAGT GGGTTTTTCAATAAATCCTTATACTATTTTACTAATGATTGGTCACTGGC CACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTTTAGATCACTATATA GGAACAGCATCGAACTTTTGTCTCATTTTTATCGCATTTGATCGATTTGG ATCGATATTTTACCCGATGACTCATAAAGTGAAATGCGATGCTCGATTCA TGAAACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTGGTCTGGCCG CTACCCATCCTGATCTACCCTTATACTGAGGAAGACCCTGATAGAGTCAT GGCATCGAGCGAATGTTACGTACATTTCTATCAAAATGATATTACTGTAA CATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCTGTATTATATTACTG GTAATTTATTTATGTATATGGAGACGGATTTCAAGAATCAGTGGAGGTGA AAAGAAAATCTATGTTATACCAGACAAAGCAGTCGAGTATCTAGCCTCAC TTTCTACTATTGCAGATGACTTTGGTAATAAGAAAGGACATATTAACCAG GGGTTTAATATAAAGGACGAGAACATCAATTTAACTATGGAAGATTCTCT AGATAGTGTTAATAATACCAGCCAAAGAGATTCTCGGGTCAACTCTTTGG ATAAGATAGACGTAAAGAAGGAAGAAAAACATGTTAAAGATGGTAAAAGG ATGAGATTCTCAACACTTTCAGAAACATTATTGCTATCACCAAGACCAAG ATCTGCCACTGCGACGACAAAGCTTGAGAACCATAACGAGTTACAATCTA CTACTACTCAAACAGCACCAAAACGACAACGAAGATTCACTTTAAATACG TTAGACTTTCATATGAAACTTGGATTTAATTCACCAGTAGGGAAAAAACG TGATAGAACATCCAATATTTCCCTTTTTGGGGAACGAAAGACTTCATGTG AACGAAAAATGGATAAATGTAGACAAAAGAATAAAAGGAGTGCTTTAAAA TGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGTTGGTTTCCATATCA TATAACTGTACTAGCAAGATCAATCTTAAAGACATCTTTACCAGAGCCTT TATGGAGATTTTGCTACATCTTTGGTTGGCTGAACTCACTTTTTAATCCC GTTTGCTATGCATTTGCTAACCGTGGATTTAAAGATCAGGTTAAAGAGAT TTTCTGAAAAAAAGATAAACGCATTGATTTTGGTTCCCCAGGTGACTGTC CGCAATAATCATTAATTTATAAGTCTTGCTGAATTTAATTTTGTAAATAT ACTACTATGCTACTATGTATACATTATATATTATATTTTGTAAATACCGG TTACTCAAAAAAAAGCTTAAGATAACTTTTAAACACAATT

Coding sequence (CDS) from alignment at scaffold_359:98429..110968-

>TCONS_00061531 ID=TCONS_00061531|Name=TCONS_00061531|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_359:98429..110968- (Clytia hemisphaerica)
ATGACGAACGCAACATCGAATAACGAAGAAATGAACTCAAATCAAACTAT
AGATTTAGAATTATCACTGATTGGATTTGGTCTGGTCGTCATGAGTCTTT
CAATCATAATCCCAAACGCCATTGTCATCTACGTTTTCAAAACAAAAAAA
AAACTACAAAAACCAAAATATTATTTTATACTTTCCCTAGCTGTAGCGGA
TCTACTAGTGGGTTTTTCAATAAATCCTTATACTATTTTACTAATGATTG
GTCACTGGCCACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTTTAGAT
CACTATATAGGAACAGCATCGAACTTTTGTCTCATTTTTATCGCATTTGA
TCGATTTGGATCGATATTTTACCCGATGACTCATAAAGTGAAATGCGATG
CTCGATTCATGAAACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTG
GTCTGGCCGCTACCCATCCTGATCTACCCTTATACTGAGGAAGACCCTGA
TAGAGTCATGGCATCGAGCGAATGTTACGTACATTTCTATCAAAATGATA
TTACTGTAACATCTACAGTTGTAGTCTTGAGCTATTTCGCTCCCTGTATT
ATATTACTGGTAATTTATTTATGTATATGGAGACGGATTTCAAGAATCAG
TGGAGGTGAAAAGAAAATCTATGTTATACCAGACAAAGCAGTCGAGTATC
TAGCCTCACTTTCTACTATTGCAGATGACTTTGGTAATAAGAAAGGACAT
ATTAACCAGGGGTTTAATATAAAGGACGAGAACATCAATTTAACTATGGA
AGATTCTCTAGATAGTGTTAATAATACCAGCCAAAGAGATTCTCGGGTCA
ACTCTTTGGATAAGATAGACGTAAAGAAGGAAGAAAAACATGTTAAAGAT
GGTAAAAGGATGAGATTCTCAACACTTTCAGAAACATTATTGCTATCACC
AAGACCAAGATCTGCCACTGCGACGACAAAGCTTGAGAACCATAACGAGT
TACAATCTACTACTACTCAAACAGCACCAAAACGACAACGAAGATTCACT
TTAAATACGTTAGACTTTCATATGAAACTTGGATTTAATTCACCAGTAGG
GAAAAAACGTGATAGAACATCCAATATTTCCCTTTTTGGGGAACGAAAGA
CTTCATGTGAACGAAAAATGGATAAATGTAGACAAAAGAATAAAAGGAGT
GCTTTAAAATGGATTTTATTGGTTTCAACAGCGTTTTTTATCTGTTGGTT
TCCATATCATATAACTGTACTAGCAAGATCAATCTTAAAGACATCTTTAC
CAGAGCCTTTATGGAGATTTTGCTACATCTTTGGTTGGCTGAACTCACTT
TTTAATCCCGTTTGCTATGCATTTGCTAACCGTGGATTTAAAGATCAGGT
TAAAGAGATTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038604XLOC_038604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061531-proteinTCONS_00061531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061531-exon-scaffold_359-1575043694:110938..110968TCONS_00061531-exon-scaffold_359-1575043694:110938..110968Clytia hemisphaericaexon
TCONS_00061531-exon-scaffold_359-1575043694:98429..100051TCONS_00061531-exon-scaffold_359-1575043694:98429..100051Clytia hemisphaericaexon
TCONS_00061531-exon-scaffold_359-1510915933:110938..110968TCONS_00061531-exon-scaffold_359-1510915933:110938..110968Clytia hemisphaericaexon
TCONS_00061531-exon-scaffold_359-1510915933:98429..100051TCONS_00061531-exon-scaffold_359-1510915933:98429..100051Clytia hemisphaericaexon
TCONS_00061531-exon-scaffold_359-1491911889:110938..110968TCONS_00061531-exon-scaffold_359-1491911889:110938..110968Clytia hemisphaericaexon
TCONS_00061531-exon-scaffold_359-1491911889:98429..100051TCONS_00061531-exon-scaffold_359-1491911889:98429..100051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:98429..110968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.638643 0.547973 0 0 4.50261 3.65479 2.48987 1.89577 0.0326719 0.54747 0.654553 0 0.484832 0.481176 0.247856 0.289189 0.180605 2.36066 3.78842 3.53843 0.553988 0.562905 1.28566 0.848337 0.0791644 0.203445 0.378933 0.143716 0.453066 0.592844
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
BLAST of TCONS_00061531 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.857e-31
Identity = 127/472 (26.91%), Postives = 202/472 (42.80%), Query Frame = 2
Query:   50 TKMTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFXXXXXXXXXXYYFILSLAVADLLVG-FSINPYTILLMIGHWPLGRGLCYTWLVLDHYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVXXXXXXXXXXXXXXXXXXXXTEEDPDRVMASSECYVHFYQNDITVTSTVVVLSYFAPCIILLVIYLCIWRRISRISGGEKKIYVIPDKAVEYLASLSTIADDFGNKKGHINQGFNIKDENINLTMEDSLDSVNNTSQRDSRVNSLDKIDVKKEEKHVKDGKRMRFSTLSETLLLSPRPRSATATTKLENHNELQSTTTQTAPKRQRRFTLNTLDFHMKLGFNSPVGKKRDRTS-NISLFGERKTSCERKMDKCRQKNKRSALKWILLVSTAFFICWFPYHITVLARSILKTSLPEPLWRFCYIFGWLNSLFNPVCYAFANRGFKDQVK 1459
            T    A S N  + +      +++ IG    ++SL+ +  N +V+  FK   +L+    YF+LSLA ADL++G FS+N YT  L++GHW LG   C  WL LD+    AS   L+ I+FDR+ S+  P++++ K   R  +  +++     V        I  +     +R + + +CY+ F    I +T    + +++ P  ++  +Y   WR           IY   +     LA+L       G++      G +   E      E S ++      R  R   L +    KEE+   +G  M   T SE       P S           E Q+ T Q       R + NT+          P  K RDR        G+ + +  +     ++K     L  ILL   AF + W PY+I VL  +  K  +PE LW   Y   ++NS  NP+CYA  N+ F+D  +
Sbjct:    3 TSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPR--RAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQPI-ITFGTAMAAFYLPVTVMCTLY---WR-----------IYRETENRARELAALQ------GSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGS-MESLTSSE----GEEPGSEVVIKMPMVDPEAQAPTKQPP-----RSSPNTV--------KRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILL---AFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFR 430          
The following BLAST results are available for this feature:
BLAST of TCONS_00061531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACM13.857e-3126.91Muscarinic acetylcholine receptor M1 OS=Homo sapie... [more]
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