TCONS_00061518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061518
Unique NameTCONS_00061518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061518 ID=TCONS_00061518|Name=TCONS_00061518|organism=Clytia hemisphaerica|type=transcript|length=1676bp
AATTgtgtttaaaagttatcttaaGCTTTTTTTTGAGTAACCGGTATTta
caaaatataatatataatgtaTACATAGTAGCATAGTAgtatatttacaa
aattaaattcagCAAGACTTATAAATTAATGATTATTGCGGACAGTCACC
TGGGGAACCAAAATCAATGCgtttatctttttttcagaaaatctctTTAA
CCTGATCTTTAAATCCACGGTTAGCAAATGCATAGCAAACGGGATTAAAA
AGTGAGTTCAGCCAACCAAAGATGTAGCAAAATCTCCATAAAGGCTCTGG
TAAAGATGTCTTTAAGATTGATCTTGCTAGTACAGTTATATGATATGGAA
ACCAACAGATAAAAAACGCTGTTGAAACCAATAAAATCCATTTTAAAGCA
CTCCTTTTATTCTTTTGTCTACATTTATCCATTTTTCGTTCACATGAAGT
CTTTCGTTCCCCAAAAAGGGAAATATTGGATGTTCTATCACGTTTTTTCC
CTACTGGTGAATTAAATCCAAGTTTCATATGAAAGTCTAACGTATTTAAA
GTGAATCTTCGTTGTCGTTTTGGTGCTGTTTGAGTAGTAGTAGATTGTAA
CTCGTTATGGTTCTCAAGCTTTGTCGTCGCAGTGGCAGATCTTGGTCTTG
GTGATAGCAATAATGTTTCTGAAAGTGTTGAGAATCTCATCCTTTTACCA
TCTTTAACAtgtttttcttccttctttACGTCTATCTTATCCAAAGAGTT
GACCCGAGAATCTCTTTGGCTGGTATTATTAACACTATCTAGAGAATCTT
CCATAGTTAAATTGATGTTCTCGTCCTTTATATTAAACCCCTGGTTAATA
TGTCCTTTCTTATTACCAAAGTCATCTGCAATAGTAGAAAGTGAGGCTAG
ATACTCGACTGCTTTGTCTGGTATAACATAGATTTTCTTTTCACCTCCAC
TGATTCTTGAAATCCGTCTCCATATACATAAATAAATTACCAGTAATATA
ATACAGGGAGCGAAATAGCTCAAGACTACAACTGTAGATGTTACAGTAAt
atcattttgatagaaatgtACGTAACATTCGCTCGATGCCATGACTCTAT
CAGGGTCTTCCTCAGTATAAGGGTAGATCAGGATGGGTAGCGGCCAGACC
AAAACTGGTAGCAACCATATAAGAATCACACATCGTTTCATGAATCGAGC
ATCGCATTTCACTTTATGAGTCATCGTTTCATGAATCGAGCATCGCATTT
CACTTTATGAGTCATCGGGTGAAATATCGATCCAAATCGATCAAATGCGA
TGAAAATGAGACAAAGATTTGATACTGTTATTAGATAGTGATCTAAAACC
AACCATGTGTAGCAGAAACCCGAGCCTAGCGGCCAGTGACCAATCATTAG
TAAAATGGTATAAGGATTTATTGAAATCAAACCCACGAGTAGATCTGCTA
CAGCTAGGGAAAGTATAAAATAATATTTGGGCttttgtagtttttttgtt
gctttgaaAACGTAGATGACAATTGCGTTTGGGATCATAATTGAAAAACT
CAAGACGACCAGACCAAATCCAATAAGTGATAATTCTAAATCTATAGTTT
GGTTTGGGTTCATTTTTTCGTCTATAGACAGGTTATTTGATGTTGCGTTC
ATCATTTTGGTTTTGTTACTTTCCta
Run BLAST on NCBI

transcript from alignment at scaffold_359:98429..101317+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061518 ID=TCONS_00061518|Name=TCONS_00061518|organism=Clytia hemisphaerica|type=transcript|length=2889bp|location=Sequence derived from alignment at scaffold_359:98429..101317+ (Clytia hemisphaerica)
AATTgtgtttaaaagttatcttaaGCTTTTTTTTGAGTAACCGGTATTta
caaaatataatatataatgtaTACATAGTAGCATAGTAgtatatttacaa
aattaaattcagCAAGACTTATAAATTAATGATTATTGCGGACAGTCACC
TGGGGAACCAAAATCAATGCgtttatctttttttcagaaaatctctTTAA
CCTGATCTTTAAATCCACGGTTAGCAAATGCATAGCAAACGGGATTAAAA
AGTGAGTTCAGCCAACCAAAGATGTAGCAAAATCTCCATAAAGGCTCTGG
TAAAGATGTCTTTAAGATTGATCTTGCTAGTACAGTTATATGATATGGAA
ACCAACAGATAAAAAACGCTGTTGAAACCAATAAAATCCATTTTAAAGCA
CTCCTTTTATTCTTTTGTCTACATTTATCCATTTTTCGTTCACATGAAGT
CTTTCGTTCCCCAAAAAGGGAAATATTGGATGTTCTATCACGTTTTTTCC
CTACTGGTGAATTAAATCCAAGTTTCATATGAAAGTCTAACGTATTTAAA
GTGAATCTTCGTTGTCGTTTTGGTGCTGTTTGAGTAGTAGTAGATTGTAA
CTCGTTATGGTTCTCAAGCTTTGTCGTCGCAGTGGCAGATCTTGGTCTTG
GTGATAGCAATAATGTTTCTGAAAGTGTTGAGAATCTCATCCTTTTACCA
TCTTTAACAtgtttttcttccttctttACGTCTATCTTATCCAAAGAGTT
GACCCGAGAATCTCTTTGGCTGGTATTATTAACACTATCTAGAGAATCTT
CCATAGTTAAATTGATGTTCTCGTCCTTTATATTAAACCCCTGGTTAATA
TGTCCTTTCTTATTACCAAAGTCATCTGCAATAGTAGAAAGTGAGGCTAG
ATACTCGACTGCTTTGTCTGGTATAACATAGATTTTCTTTTCACCTCCAC
TGATTCTTGAAATCCGTCTCCATATACATAAATAAATTACCAGTAATATA
ATACAGGGAGCGAAATAGCTCAAGACTACAACTGTAGATGTTACAGTAAt
atcattttgatagaaatgtACGTAACATTCGCTCGATGCCATGACTCTAT
CAGGGTCTTCCTCAGTATAAGGGTAGATCAGGATGGGTAGCGGCCAGACC
AAAACTGGTAGCAACCATATAAGAATCACACATCGTTTCATGAATCGAGC
ATCGCATTTCACTTTATGAGTCATCGGGTAAAATATCGATCCAAATCGAT
CAAATGCGATAAAAATGAGACAAAAGTTCGATGCTGTTCCTATATAGTGA
TCTAAAACCAACCATGTGTAGCAGAGACCCCGGCCTAGTGGCCAGTGACC
AATCATTAGTAAAATAGTATAAGGATTTATTGAAAAACCCACTAGTAGAT
CCGCTACAGCTAGGGAAagtataaaataatattttggtttttgtagtttt
ttttttgttttgaaaacgtaGATGACAATGGCGTTTGGGATTATGATTGA
AAGACTCATGACGACCAGACCAAATCCAATCAGTGATAATTCTAAATCTA
TAGTTTGATTTGAGTTCATTTCTTCGTTATTCGATGTTGCGTTcgtcatt
tttgttttgttgttgttactttcctaaaaaacatcaaatgttAAGTTTAA
AGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGTTCTCGTCCTTTATATTAAACCCCTGGTT
AATATGTCCTTTCTTATTACCAAAGTCATCTGCAATAGTAGAAAGTGAGG
CTAGATACTCGACTGCTTTGTCTGGTATAACATAGATTTTCTTTTCACCT
CCACTGATACTTGAAATCCGTTTCCATATACATAAATAAATTACCAGTAA
TATAATGCAGGGAGCGATATAGCTCAAGACTACAACTATAGATGTTACAG
TAAtatcattttgatagaaatgtACGTAACATTCGCTCGATGCCATGAAT
CTATCAGGGTCTTCCTCAGTATAGGGGTAGATCAGGATGGGTAGCGGCCA
GACCAAAACTGGTAGCAACCATATAAGAATCACACATCGTTTCATGAATC
GAGCATCGCATTTCACTTTATGAGTCATCGGGTGAAATATCGATCCAAAT
CGATCAAATGCGATGAAAATGAGACAAAGATTTGATACTGTTATTAGATA
GTGATCTAAAACCAACCATGTGTAGCAGAAACCCGAGCCTAGCGGCCAGT
GACCAATCATTAGTAAAATGGTATAAGGATTTATTGAAATCAAACCCACG
AGTAGATCTGCTACAGCTAGGGAAAGTATAAAATAATATTTGGGCttttg
tagtttttttgttgctttgaaAACGTAGATGACAATTGCGTTTGGGATCA
TAATTGAAAAACTCAAGACGACCAGACCAAATCCAATAAGTGATAATTCT
AAATCTATAGTTTGGTTTGGGTTCATTTTTTCGTCTATAGACAGGTTATT
TGATGTTGCGTTCATCATTTTGGTTTTGTTACTTTCCta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038600XLOC_038600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061518-exon-scaffold_359-1491911889:98429..99650TCONS_00061518-exon-scaffold_359-1491911889:98429..99650Clytia hemisphaericaexon
TCONS_00061518-exon-scaffold_359-1510915933:98429..99650TCONS_00061518-exon-scaffold_359-1510915933:98429..99650Clytia hemisphaericaexon
TCONS_00061518-exon-scaffold_359-1575043694:98429..99650TCONS_00061518-exon-scaffold_359-1575043694:98429..99650Clytia hemisphaericaexon
TCONS_00061518-exon-scaffold_359-1491911889:100864..101317TCONS_00061518-exon-scaffold_359-1491911889:100864..101317Clytia hemisphaericaexon
TCONS_00061518-exon-scaffold_359-1510915933:100864..101317TCONS_00061518-exon-scaffold_359-1510915933:100864..101317Clytia hemisphaericaexon
TCONS_00061518-exon-scaffold_359-1575043694:100864..101317TCONS_00061518-exon-scaffold_359-1575043694:100864..101317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:98429..101317 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.632692	0.359002	0.319537	0.235287	0.719462	0	0.280751	0	0.778296	0.164787	0	1.04546	0.216999	0	0.0400449	0	0.049106	1.06712	0.97935	1.38004	0	0	0.289131	0.429276	0.0380365	0	0	4.92245e-10	0.121899	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00061518 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.208e-19
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = -1 
Query: 1236 NLSIDEKMNPNQTI------DLELSLIGFGLVVLSFSIMIPNAIVIYVFKATKKLQKPKYYFILSLAVADLLVGLISINPYTILLMIGHWPLGSGFCYTWLVLDHYLITVSNLCLIFIAFDRFGSIFHPMTHKVKCDAR 1634
            N S    ++PN T+        +++ IG    +LS + +  N +V+  FK   +L+    YF+LSLA ADL++G  S+N YT  L++GHW LG+  C  WL LD+     S + L+ I+FDR+ S+  P++++ K   R
Sbjct:    2 NTSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPR 140
The following BLAST results are available for this feature:
BLAST of TCONS_00061518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACM15.208e-1935.25Muscarinic acetylcholine receptor M1 OS=Homo sapie... [more]
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