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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061513 ID=TCONS_00061513|Name=TCONS_00061513|organism=Clytia hemisphaerica|type=transcript|length=803bp
TTTTTCAGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAAAT
TGTGAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGAAT
TACATCCAATACACTTGAATGCAATCCAgaagataaaagaaaaacagaTT
TCTCAGGGATATGGTACACAGGTGATGAAACTCAGTTAGATCTTTGTATG
GATCTCGAATGCAAAACACGtgATACTTTGAGTGAATGTAATCGTTTCAA
AGCTGGTTGCAATTGGTGTCATAAATATCCGAGCGGAGCGTCTGCGACTG
ACGATAAAAAATATTGTGAATACTCCGACAAAACATGCTTCGAACATTTA
ATTCCTAAAACAAGCCCTTCACCCCCAAAGAAACCTGGAGATAAAGATGG
ACTTTCCAAAGAAGAACTAGCTGGAATAATAGTTGGATGTTTGATATTCA
TTCTCATTATATTGGCAATTGTTTACTTTAAACGGAAGAGCATCAATCGT
AAACCACCAGCAAAATCTGAATCAACAATCGAAACGAATAACAACGCTGT
CAGTAACGCACCAACACTACCTCGACAACAAAAAGCTTTTACCAACTTTG
CTTATGTTGATCAGAATGACCCTGATTCATTTTCACCGACTGGTGCACCA
AAAACACCGCTCCCACCAGAGGAAGATCCAGTTGCACAAGTTGACGAGGA
CCAATCTAATATTAAAGATGGCAAACTTCCCGATGTTGTTATGAAAAATT
CTAATGACAGTGAATTTGGAGCTTGAATTGAAACCAAATTTCAAGAGTTT
CAA Run BLAST on NCBI protein sequence of TCONS_00061513-protein >TCONS_00061513-protein ID=TCONS_00061513-protein|Name=TCONS_00061513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
FQERFGNCSNDISETNCECPCIQPVTCLSDLRITSNTLECNPEDKRKTDF
SGIWYTGDETQLDLCMDLECKTRDTLSECNRFKAGCNWCHKYPSGASATD
DKKYCEYSDKTCFEHLIPKTSPSPPKKPGDKDGLSKEELAGIIVGCLIFI
LIILAIVYFKRKSINRKPPAKSESTIETNNNAVSNAPTLPRQQKAFTNFA
YVDQNDPDSFSPTGAPKTPLPPEEDPVAQVDEDQSNIKDGKLPDVVMKNS
NDSEFGA Run BLAST on NCBI transcript from alignment at scaffold_359:54..2150+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061513 ID=TCONS_00061513|Name=TCONS_00061513|organism=Clytia hemisphaerica|type=transcript|length=2097bp|location=Sequence derived from alignment at scaffold_359:54..2150+ (Clytia hemisphaerica)
TTTTTCAGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAAAT
TGTGAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGAAT
TACGTAAGTAAACGAGTGTTCCGGTGATATGCCGGACACAAGCTCTCCCG
CGCAGTTCGAGTGGCGTTACCATCGTAACTGTTTGTCGCGTACAAAAAAC
TAGCAGTATCTGGACAGCGCTGAATGTTCCTATTTGAAAAAGGAAGAGTT
GCTACTTTGTAAAGAATAtatgcattttttataagaatggtgtttttttt
tccGTTTCACAattgatattcttaactttttacgaaaaatcatcctgaaa
tattttttacggTATTCTAACGAAAATCCAACCATAAATTTACCGTGAAT
TACATGTCTGAAGCAAAAAATGGCCTTTTTTAAAAGTATTGAGCCTTACT
GCGGGATATttggcaatttacagttaaaaatgctttgaaaatgACGATCA
TGTTGCCGAATTACATGATGGTACTCTAAAGGTCCCAAATAGTAGGGGGG
GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcccaaaaaggggggggggggggtctgaataa
aatGGGGtccgaatttttttcaaaatcttatgaACGGGGGTGGTTCGAAT
AAAAGCGGCTAAAACCAGGCTATTTGCTATTTAAAGCAATTCTTTTTTAA
GATAATCTAACCATGGAAGACGATAGCCTTTAAACCAAAGAGCATAAATA
CGttataatatcaggggtggtcaaagcaaatttttcagaaaacgaGCTCA
AATGCAAGCCTTTGAGTTGCTACCATAGTATCAGagattgagttttcaaa
gaatatactGTAATGATTttggcctgtgcttttcacggtatggagttgct
taaaaaaaattgtgtattcacattaaatttccttttttaacaGATCCAAT
ACACTTGAATGCAATCCAgaagataaaagaaaaacagaTTTCTCAGGGAT
ATGGTACACAGGTGATGAAACTCAGTTAGATCTTTGTATGGATCTCGAAT
GCAAAACACGGTAAGTACAAAGTGTATAGTTTATTCTTTCCCACagaaat
tttcaccaatatCTAGTGGtgattgaaaaaggaaattCTGAAAGCTGTTA
ACCTCAGCCATTTTCCGATCACAAGTATTTTTCTATGCCTTTAGAAGtaa
tcttttgatattttaactGGTTATCACAGGTAGATGGAGCAGAAAAGGGG
GTAATAGAAAGATAGCGATCGTAGCATTCAGCCAGGTcatcccaaaatgg
tacttgatgcatctctgcttgatgctcatcAATAAAAAGAAGTAGCTATT
ctaatattaaaaataatttctttgaaaatcctttttgatcatgtcgattt
tttattttttacagtgATACTTTGAGTGAATGTAATCGTTTCAAAGCTGG
TTGCAATTGGTGTCATAAATATCCGAGCGGAGCGTCTGCGACTGACGATA
AAAAATATTGTGAATACTCCGACAAAACATGCTTCGAACATTTAATTCCT
AAAACAAGCCCTTCACCCCCAAAGAAACCTGGAGATAAAGATGGACTTTC
CAAAGAAGAACTAGCTGGAATAATAGTTGGATGTTTGATATTCATTCTCA
TTATATTGGCAATTGTTTACTTTAAACGGAAGAGCATCAATCGTAAACCA
CCAGCAAAATCTGAATCAACAATCGAAACGAATAACAACGCTGTCAGTAA
CGCACCAACACTACCTCGACAACAAAAAGCTTTTACCAACTTTGCTTATG
TTGATCAGAATGACCCTGATTCATTTTCACCGACTGGTGCACCAAAAACA
CCGCTCCCACCAGAGGAAGATCCAGTTGCACAAGTTGACGAGGACCAATC
TAATATTAAAGATGGCAAACTTCCCGATGTTGTTATGAAAAATTCTAATG
ACAGTGAATTTGGAGCTTGAATTGAAACCAAATTTCAAGAGTTTCAA Coding sequence (CDS) from alignment at scaffold_359:54..2150+ >TCONS_00061513 ID=TCONS_00061513|Name=TCONS_00061513|organism=Clytia hemisphaerica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_359:54..2150+ (Clytia hemisphaerica)
TTTCAGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAAATTG
TGAATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGAATTA
CATCCAATACACTTGAATGCAATCCAgaagataaaagaaaaacagaTTTC
TCAGGGATATGGTACACAGGTGATGAAACTCAGTTAGATCTTTGTATGGA
TCTCGAATGCAAAACACGtgATACTTTGAGTGAATGTAATCGTTTCAAAG
CTGGTTGCAATTGGTGTCATAAATATCCGAGCGGAGCGTCTGCGACTGAC
GATAAAAAATATTGTGAATACTCCGACAAAACATGCTTCGAACATTTAAT
TCCTAAAACAAGCCCTTCACCCCCAAAGAAACCTGGAGATAAAGATGGAC
TTTCCAAAGAAGAACTAGCTGGAATAATAGTTGGATGTTTGATATTCATT
CTCATTATATTGGCAATTGTTTACTTTAAACGGAAGAGCATCAATCGTAA
ACCACCAGCAAAATCTGAATCAACAATCGAAACGAATAACAACGCTGTCA
GTAACGCACCAACACTACCTCGACAACAAAAAGCTTTTACCAACTTTGCT
TATGTTGATCAGAATGACCCTGATTCATTTTCACCGACTGGTGCACCAAA
AACACCGCTCCCACCAGAGGAAGATCCAGTTGCACAAGTTGACGAGGACC
AATCTAATATTAAAGATGGCAAACTTCCCGATGTTGTTATGAAAAATTCT
AATGACAGTGAATTTGGAGCTTGATTTCAGGAAAGATTTGGAAATTGTTC
GAACGATATCAGCGAAACAAATTGTGAATGTCCTTGCATACAACCCGTTA
CTTGTCTCAGTGATCTTCGAATTACATCCAATACACTTGAATGCAATCCA
gaagataaaagaaaaacagaTTTCTCAGGGATATGGTACACAGGTGATGA
AACTCAGTTAGATCTTTGTATGGATCTCGAATGCAAAACACGtgATACTT
TGAGTGAATGTAATCGTTTCAAAGCTGGTTGCAATTGGTGTCATAAATAT
CCGAGCGGAGCGTCTGCGACTGACGATAAAAAATATTGTGAATACTCCGA
CAAAACATGCTTCGAACATTTAATTCCTAAAACAAGCCCTTCACCCCCAA
AGAAACCTGGAGATAAAGATGGACTTTCCAAAGAAGAACTAGCTGGAATA
ATAGTTGGATGTTTGATATTCATTCTCATTATATTGGCAATTGTTTACTT
TAAACGGAAGAGCATCAATCGTAAACCACCAGCAAAATCTGAATCAACAA
TCGAAACGAATAACAACGCTGTCAGTAACGCACCAACACTACCTCGACAA
CAAAAAGCTTTTACCAACTTTGCTTATGTTGATCAGAATGACCCTGATTC
ATTTTCACCGACTGGTGCACCAAAAACACCGCTCCCACCAGAGGAAGATC
CAGTTGCACAAGTTGACGAGGACCAATCTAATATTAAAGATGGCAAACTT
CCCGATGTTGTTATGAAAAATTCTAATGACAGTGAATTTGGAGCTTGATT
TCAGGAAAGATTTGGAAATTGTTCGAACGATATCAGCGAAACAAATTGTG
AATGTCCTTGCATACAACCCGTTACTTGTCTCAGTGATCTTCGAATTACA
TCCAATACACTTGAATGCAATCCAgaagataaaagaaaaacagaTTTCTC
AGGGATATGGTACACAGGTGATGAAACTCAGTTAGATCTTTGTATGGATC
TCGAATGCAAAACACGtgATACTTTGAGTGAATGTAATCGTTTCAAAGCT
GGTTGCAATTGGTGTCATAAATATCCGAGCGGAGCGTCTGCGACTGACGA
TAAAAAATATTGTGAATACTCCGACAAAACATGCTTCGAACATTTAATTC
CTAAAACAAGCCCTTCACCCCCAAAGAAACCTGGAGATAAAGATGGACTT
TCCAAAGAAGAACTAGCTGGAATAATAGTTGGATGTTTGATATTCATTCT
CATTATATTGGCAATTGTTTACTTTAAACGGAAGAGCATCAATCGTAAAC
CACCAGCAAAATCTGAATCAACAATCGAAACGAATAACAACGCTGTCAGT
AACGCACCAACACTACCTCGACAACAAAAAGCTTTTACCAACTTTGCTTA
TGTTGATCAGAATGACCCTGATTCATTTTCACCGACTGGTGCACCAAAAA
CACCGCTCCCACCAGAGGAAGATCCAGTTGCACAAGTTGACGAGGACCAA
TCTAATATTAAAGATGGCAAACTTCCCGATGTTGTTATGAAAAATTCTAA
TGACAGTGAATTTGGAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061513-exon-scaffold_359-1491911889:54..156 | TCONS_00061513-exon-scaffold_359-1491911889:54..156 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1510915933:54..156 | TCONS_00061513-exon-scaffold_359-1510915933:54..156 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1575043694:54..156 | TCONS_00061513-exon-scaffold_359-1575043694:54..156 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1491911889:1097..1213 | TCONS_00061513-exon-scaffold_359-1491911889:1097..1213 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1510915933:1097..1213 | TCONS_00061513-exon-scaffold_359-1510915933:1097..1213 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1575043694:1097..1213 | TCONS_00061513-exon-scaffold_359-1575043694:1097..1213 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1491911889:1568..2150 | TCONS_00061513-exon-scaffold_359-1491911889:1568..2150 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1510915933:1568..2150 | TCONS_00061513-exon-scaffold_359-1510915933:1568..2150 | Clytia hemisphaerica | exon |
| TCONS_00061513-exon-scaffold_359-1575043694:1568..2150 | TCONS_00061513-exon-scaffold_359-1575043694:1568..2150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:54..2150 + |
Blast
The following BLAST results are available for this feature:
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