TCONS_00061496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061496
Unique NameTCONS_00061496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061496 ID=TCONS_00061496|Name=TCONS_00061496|organism=Clytia hemisphaerica|type=transcript|length=603bp
tttgttgtTAACACTCTTAGAAATTTAGATCAATATTTTGATCAACTCGG
ATCGATTCCGCCCTCACAGAACGCTCCACAagtattcaaaaataatcacc
aaatttttcaaaagacactaaaataCCTTTCACGATTATTCGATCATGTC
AAACTTCTATTCTGTTTTTAACACCATTAGAAACCTAGATCATAACTTTG
ATCAACTCGGATCGATTCCGCCCTCACAGAACGCTCCACaagaattcaaa
aatattcaccaaaattttcaaaagacactaaaattcCTTTCACGATTATT
CGATCATGTCAAACTTCTATTCTGTTTTTAACACCATTAGAAACCTAGAT
CATAACTTTGATCAACTCGGATCGATTCCGCCCTCACAGAACGCTCACaa
gaattcaaaaatattcaccaaaattttcaaaagacactaaaataCCTTTC
ACGCTAATTCGATCATGTCAAACTTCTATTCTGTTTTTAAACACCATTAG
AAACCTAGATCATAACTTTGATCAACTCGGATCGATTCCGCCCTCACAGA
ACGCTCACaagaattcaaaaatattcaccaaaattttcaaaagacactAA
AAN
Run BLAST on NCBI

transcript from alignment at scaffold_358:276686..277288

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061496 ID=TCONS_00061496|Name=TCONS_00061496|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at scaffold_358:276686..277288 (Clytia hemisphaerica)
NTTTTagtgtcttttgaaaattttggtgaatatttttgaattcttGTGAG
CGTTCTGTGAGGGCGGAATCGATCCGAGTTGATCAAAGTTATGATCTAGG
TTTCTAATGGTGTTTAAAAACAGAATAGAAGTTTGACATGATCGAATTAG
CGTGAAAGGtattttagtgtcttttgaaaattttggtgaatatttttgaa
ttcttGTGAGCGTTCTGTGAGGGCGGAATCGATCCGAGTTGATCAAAGTT
ATGATCTAGGTTTCTAATGGTGTTAAAAACAGAATAGAAGTTTGACATGA
TCGAATAATCGTGAAAGgaattttagtgtcttttgaaaattttggtgaat
atttttgaattcttGTGGAGCGTTCTGTGAGGGCGGAATCGATCCGAGTT
GATCAAAGTTATGATCTAGGTTTCTAATGGTGTTAAAAACAGAATAGAAG
TTTGACATGATCGAATAATCGTGAAAGGtattttagtgtcttttgaaaaa
tttggtgattatttttgaatactTGTGGAGCGTTCTGTGAGGGCGGAATC
GATCCGAGTTGATCAAAATATTGATCTAAATTTCTAAGAGTGTTAacaac
aaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038580XLOC_038580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061496-exon-scaffold_358-1491911889:276686..277288TCONS_00061496-exon-scaffold_358-1491911889:276686..277288Clytia hemisphaericaexon
TCONS_00061496-exon-scaffold_358-1510915933:276686..277288TCONS_00061496-exon-scaffold_358-1510915933:276686..277288Clytia hemisphaericaexon
TCONS_00061496-exon-scaffold_358-1575043694:276686..277288TCONS_00061496-exon-scaffold_358-1575043694:276686..277288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:276686..277288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.623496	0.790273	4.05328	3.46768	0.121431	0.0959562	0.115767	0.325139	0	0.281966	0.364911	0.179908	0.419203	0.0621923	0.153392	0.0548709	0	0	0	0.400656	0.0870606	0.509582	0	0.281591	3.48039	5.26322	0	0	0	0.101826
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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