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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061391 ID=TCONS_00061391|Name=TCONS_00061391|organism=Clytia hemisphaerica|type=transcript|length=1297bp
GTGACACAATAGGAtgtattcatgaaaaaaataaaataaaaaatacaaaa
ataatcaatcagcgattcaaaaaatattgttaattGCTCTAAAGATATAA
GAAAACAATAATCGACttcttttcaccaaaatagtGATTTTGGGTAACTC
CACGGTATCGCCATTCTTCTGAATGCTGTTCGTATACCACAAACTTCCCA
TTCTCAATACACTGGTCTCTTTGTTTAGGAtgcaataaaaaagatttagc
aTTTCTCAGTTCCTCTCTATTTGGATATTCCAAAACGAGACCGTTAAGAA
GGTGATTGCCATAGACAACATTTCTCCTTCTGGTAATAAGGTACAGAAGA
TCAGTTACTCCAATTATTTCTTTcctgataaaataaaaatttcttcctcC
ATGTTTCACTGACTTTGGTACTTCATTTTCCAACAATGCTGATATAGCCT
CATACCAATCTTTATACGAAGTGAAAAGATTTGATCCTGTTTCTATACCA
AGAAAGTACTTATTAGCACCCCAGAGCAGTTTATCTTCTTTAGTAGCGGC
TGATGGCAGCTGAACAATTGGCAAATTTTCAGGCAACGGATCTTTCTTTA
ACTCATTTGAATTATTGGCTTCCATCGATTCAATTTTGTGACGAAGATTC
TGTGTTGCcaattctttttctctttccatCTGCCCTAGTTTAATCTTATT
GTTGTTCTCTAAGTCCTTCATTTTCAATGCAAACTCATTTTCCTTGACAT
TCATTTTGATTTGGTATTCATTTTCTTTGGCAGCCATTTTGGTTTggtgt
tcattttccttggcAACCATTTTGGTTTGGTGTTCATGCTCTTTCGCCAA
AAATGCTTTCTCCATTTCATTGATTTTCGTCTTGCGTTCATTTTCCTTGT
TGGCGATTTCCTTGTCTTTTTCAGCTAGTTTGTTCTGCAACTCATTCTGT
TGCTTCAGCATTTCTTGATTGATTACACCTTTGTGTGAGTCCAACTCATT
CGTTTTCTTCAACTTCAAGAGTTCCAGCTCATGAGTTAACGATTGGTTGT
CCTTTTCAAGCtgcaaaatcttcattttttgttcTTTGTCTTGGTTGGAC
ATTTCCTTTTCCAACTCAAGAATTTTGATGCGATTTTCCAATGTCAATTT
TTGAATCTGTTTGTCATGGTTTTCTTTAAGTTTTGCCGTCTCAACGACGC
TATTGTCAACTTTGTTGGTGACATTTCTACCAGCAGCACTGTGTGCCAAA
TTGCGATCGTCAAAGTGTGCAGAAtccatttttatttcttttttgat Run BLAST on NCBI transcript from alignment at scaffold_358:378405..381710+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061391 ID=TCONS_00061391|Name=TCONS_00061391|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at scaffold_358:378405..381710+ (Clytia hemisphaerica)
GTGACACAATAGGAtgtattcatgaaaaaaataaaataaaaaatacaaaa
ataatcaatcagcgattcaaaaaatattgttaattGCTCTAAAGATATAA
GAAAACAATAATCGACttcttttcaccaaaatagtGATTTTGGGTAACTC
CACGGTATCGCCATTCTTCTGAATGCTGTTCGTATACCACAAACTTCCCA
TTCTCAATACACTGGTCTCTTTGTTTAGGAtgcaataaaaaagatttagc
aTTTCTCAGTTCCTCTCTATTTGGATATTCCAAAACGAGACCGTTAAGAA
GGTGATTGCCATAGACAACATTTCTCCTTCTGGTAATAAGGTACAGAAGA
TCAGTTACTCCAATTATTTCTTTcctgataaaataaaaatttcttcctcC
ATGTTTCACTGACTTTGGTACTTCATTTTCCAACAATGCTGATATAGCCT
CATACCAATCTTTATACGAAGTGAAAAGATTTGATCCTGTTTCTATACCA
AGAAAGTACTTATTAGCACCCCAGAGCAGTTTATCTTCTTTAGTAGCGGC
TGATGGCAGCTGAACAATTGGCAAATTTTCAGGCAACGGATCTTTCTTTA
ACTCATTTGAATTATTGGCTTCCATCGATTCAATTTTGTGACGAAGATTC
TGTGTTGCcaattctttttctctttccatCTGCCCTAGTTTAATCTTATT
GTTGTTCTCTAAGTCCTTCATTTTCAATGCAAACTCATTTTCCTTGACAT
TCATTTTGATTTGGTATTCATTTTCTTTGGCAGCCATTTTGGTTTggtgt
tcattttccttggcAACCATTTTGGTTTGGTGTTCATGCTCTTTCGCCAA
AAATGCTTTCTCCATTTCATTGATTTTCGTCTTGCGTTCATTTTCCTTGT
TGGCGATTTCCTTGTCTTTTTCAGCTAGTTTGTTCTGCAACTCATTCTGT
TGCTTCAGCATTTCTTGATTGATTACACCTTTGTGTGAGTCCAACTCATT
CGTTTTCTTCAACTTCAAGAGTTCCAGCTCATGAGTTAACGATTGGTTGT
CCTTTTCAAGCtgcaaaatcttcattttttgttcTTTGTCTTGGTTGGAC
ATTTCCTTTTCCAACTCAAGAATTTTGATGCGATTTTCCAATGTCAATTT
TTGAATCTGTTTGTCATGGTTTTCTTTAAGTTTTGCCGTCTCAACGACGC
TATTGTCAACTTTGTTGGTGACATTTCTACCGGTAGCACTGTGTGCCAAA
TTGCGATCATCACAATGTGCAGAttccattttttgtttctttttttatct
aCATGATAAAATAGTCATTAGCTTTCAAATATCAATTTCTTGAAAACGAC
AAAGAACAATACTTTTGGAAATAGACAGTCCTGTCAATAGCTTCTagtca
taaaaaatcacaaGACAGTTCAGGAAGAAGTAGTCAATAATAGAAATCCA
TAGCCTGTATTAGCCAATACTTTTTTCCATGTAAgcattcaataaatcta
atgagagtctaaatttttttctcgtgaaagaataaaaatgaataatacaa
ttgtttgtaatatttgtcctgagcaaaatctcaaaatatttttgcgtacc
tattttccaaagttgagatatttaagttacaagtttctggcttttagtaa
gaaaacaatagaattttaacgtaagaaccgtgtaggagcccattttcaaa
tttcgatatctcaattttgtaaaattgttacagaaaaatactttgaggtt
ttaATAAGGACCACAGAAGGTTTCTATAATCTAACCATCTGACTATCtct
ttaaattcattttcagaAGTAGGATTTCTAGCAGAGGGTCAATTCTTAAT
ATAAGACAGTAATAAATGTATTAaatgtgaagaaataagaatgtctgccc
aactatattcactcaggaaATTTGTGTGGCAGgtatatgcatttcgtcct
tattgggACTCATCAGCACTGCGTACTGCACCCTCACTGGCCGGATCGAT
TTAGCAAATCGATTTTATATTTCTAAAAACTCAGGTGACACAATATGGCG
TATtcgcaaaaaataataattaaaaaatacaaaaataatcatcagtgatt
ctaaaaatattgacatgaattatcaaaccaatcaaaattgTTGTCTCTCT
AAAGatataagaaaataataatcgacttcttttcaccaaaatagtGATTT
TTGGTAACTCCACCGTATTGCCAGTTTTCTGAATCGGGGAGGTGCTCGTA
TACCACAAACTTTCCATTATTCTCAATACACTCGTCTCTTTGTTTAGGAT
GCATTAAAAAAGATTTAGCATTTCTTAGTTCCTCTCTATTTGGATATTCC
AAAATGAGAGCGTTAGAAAGGCCATTGCCATAGACAACGTTTCTCCTTCT
GGTAATAAGGTACAGATTATCATGTGCtccaactttttcttttctgataa
aataaaaatttcttcctcCATGTTTCACTGACTTTTGTACTGCATTTTCC
AACAATGCTGAAATAGCCGCATACCAATCCTTATACGAAGTGAAAAGATT
TGATCCTGTTTCTATACCAAGAAAGTACTTATTAGCACCCCACCAGAGCA
GTTTATCTTCTTTAGTAGCGGCTGATGGCAACTGCTGCACAATTGGCAAA
TTTTCAGGCAGCGGATCTTTCTTTAACTCATTTGAATTATTGGCTTCCAT
CGATTCAATTTTGTGACGAAGAGCCTGTGTTACcaattctttttctcttt
ccatCTGCCCTACTTTAATCTTGTTGTTGTTCTCTAAGTCCTTCATTTTC
AATGCAAACTCATTTTCCTTGGCAGCCATTTTGGTTTggtgttcattttc
cttggcAGCAATTTTGGTTTGGTATTCATGCTCTTTCGCCAAAAATGCTT
TCTCCATTTCATTGATTTTCGTCTTgcattcattttccttgttgGCAATT
TCCTTGTCTTTTTCGGCAAGCTTGTTCTGGAACTCATTCTGTTGTTTCAG
CATTTCTTGATTGATCACACCTTTGTGTAAGTCCAACTCATTTGTTTTCT
TCAACTCTATGAGTTCCAGGTCCTTTTCAAGCtgcaaaatcttcattttt
tgttcTTTGTCTTGGTTGGATATTTCTTTTTCCAATTCAAGAATTTTGAT
ACGATTTTCAAATGTCAATTTTTGAATCTGCTTATCATGGTCTTCCTTAA
GTTTCGCAATCTCAACGACGCTATTGTCAACATTTCTACCAGCAGCACTG
TGTGCCAAATTGCGATCGTCAAAGTGTGCAGAAtccatttttatttcttt
tttgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061391-exon-scaffold_358-1491911889:378405..379626 | TCONS_00061391-exon-scaffold_358-1491911889:378405..379626 | Clytia hemisphaerica | exon |
| TCONS_00061391-exon-scaffold_358-1510915933:378405..379626 | TCONS_00061391-exon-scaffold_358-1510915933:378405..379626 | Clytia hemisphaerica | exon |
| TCONS_00061391-exon-scaffold_358-1575043694:378405..379626 | TCONS_00061391-exon-scaffold_358-1575043694:378405..379626 | Clytia hemisphaerica | exon |
| TCONS_00061391-exon-scaffold_358-1491911889:381636..381710 | TCONS_00061391-exon-scaffold_358-1491911889:381636..381710 | Clytia hemisphaerica | exon |
| TCONS_00061391-exon-scaffold_358-1510915933:381636..381710 | TCONS_00061391-exon-scaffold_358-1510915933:381636..381710 | Clytia hemisphaerica | exon |
| TCONS_00061391-exon-scaffold_358-1575043694:381636..381710 | TCONS_00061391-exon-scaffold_358-1575043694:381636..381710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:378405..381710 + |
Blast
The following BLAST results are available for this feature:
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