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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061379 ID=TCONS_00061379|Name=TCONS_00061379|organism=Clytia hemisphaerica|type=transcript|length=1515bpRun BLAST on NCBI protein sequence of TCONS_00061379-protein >TCONS_00061379-protein ID=TCONS_00061379-protein|Name=TCONS_00061379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp MIYSSFIESILAHPMTEQVCFFLVPAISPKLSLQTLSKVLVTMDEEKIQSRun BLAST on NCBI transcript from alignment at scaffold_358:140076..146837+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061379 ID=TCONS_00061379|Name=TCONS_00061379|organism=Clytia hemisphaerica|type=transcript|length=6762bp|location=Sequence derived from alignment at scaffold_358:140076..146837+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:140076..146837+ >TCONS_00061379 ID=TCONS_00061379|Name=TCONS_00061379|organism=Clytia hemisphaerica|type=CDS|length=15120bp|location=Sequence derived from alignment at scaffold_358:140076..146837+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061379 vs. Swiss-Prot (Human)
Match: UBE3C (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3) HSP 1 Score: 247.669 bits (631), Expect = 1.516e-71 Identity = 170/548 (31.02%), Postives = 279/548 (50.91%), Query Frame = 2
Query: 5 IYSSFIESILAHPMTEQVCFFLVPAISPKLS-------LQTLSKVLVTMDEEKIQSVWMLYSLLSIIEQNQDNAMDFETTLNCTKALRIMIDQLRPRKDKERTGQVETXXXXXXXXXXXXXXLMELGETEPIPESHCQRYVSHKCVELMSEKFLISPCLTLLSKGLQKNKSLRSQLLIDICH---ISHHMLYTLNTPVQKSEFLYSLAFSKYFLRLTWYELLALETYTNTGKTVQLLHQLAHGNAMTSQDEQRVIPMLSVYTTLLRYAMFSIYDTDFYSD------NTKSTLMPFRITEVIEMSRILRDVVLGLIVFMYPDIK--------------MITTSA--------QQKQWHTLCRSVTLLVKQLYARDSRRRFCPEHHWLSNRAAISHETMKIXXXXXXXXXXXXXXXXXXKD-------HLFKPGLSTLNARNVAILEYVPFAVPFLQRVLIFQRIIQEDKKNNQTPEQAFISGGGVESLTINRKYLYQDAFDQLSKERRADIKQVVRVQMINAQGLDEAGIDGGGVFREFMSQFIKEAYD 1513
++++F E LA P T+Q+ F++PA++ + L L + + + W+ Y +L++ E N A+ E L + L+ + QL P + SDS +ES + D+ E G Y++ +C++ + K + L L+ + + + + +CH + H M+ V K LYSLAF+ FLR W+ + ++ T TG V LL ++ G+ M+ +D R+IP+ ++++L +++ SI+D +F+ D +S++MPF + E+I +SR LRD LG+I YP+ K +TTS+ +QK+W L + +T LVK L +RD+RR FCP +HWLS + I + + + + L P LS R +A+L +PF VPF +RV IFQR+I DK+ Q + F+ G V TI R Y+Y+DA+D+LS E D+K+ +RV ++NA GLDEAGIDGGG+FREF+++ +K ++
Sbjct: 260 VFTAFTEEFLAAPFTDQIFHFIIPALADAQTVFPYEPFLNALLLIESRCSRKSGGAPWLFYFVLTVGE-NYLGALSEEGLLVYLRVLQTFLSQL-PVSPASASCHDSASDSEEESEEADKPSSPEDGRLS-------VSYITEECLKKLDTKQQTNTLLNLVWRDSASEEVFTT--MASVCHTLMVQHRMM------VPKVRLLYSLAFNARFLRHLWFLISSMSTRMITGSMVPLLQVISRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQSSMMPFTLEELIMLSRCLRDACLGIIKLAYPETKPEVREEYITAFQSIGVTTSSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLDVGLESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQG-DGPFLDGINV---TIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFN 786 The following BLAST results are available for this feature:
BLAST of TCONS_00061379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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