TCONS_00061365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061365
Unique NameTCONS_00061365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061365 ID=TCONS_00061365|Name=TCONS_00061365|organism=Clytia hemisphaerica|type=transcript|length=379bp
AACTCTCACTCTCAGCGCGTAGGATATCACAAAAAACATATCATGTAAAA
CATTTAACATTCAATATATAAAAACTCTATTGATGGAACAAACATGTAAT
ATTCTTTCAACAAGTTGCAAGTTGGCGTCTCCGGGCCCTGGAACACTCAA
CCTCTTATTAATTTAATATCACATCTTGGTTCTtgaataaatctttttca
aaggtAAATACAATCAAAAAAACTCTTGGTCAAACGGAACTTACAATGTT
CTTCAAACTCACGCGATTTCTCGTCACTCTCTCACGCTTTCACTTATTTC
TACGTCATGTCTTCATCATCCCGTTTCATATTTCTCTAATGTTTCTAGTC
AAGTTTGGGATATTTGAAACCAAAAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_357:47660..48038

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061365 ID=TCONS_00061365|Name=TCONS_00061365|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_357:47660..48038 (Clytia hemisphaerica)
ATATTTTTGGTTTCAAATATCCCAAACTTGACTAGAAACATTAGAGAAAT
ATGAAACGGGATGATGAAGACATGACGTAGAAATAAGTGAAAGCGTGAGA
GAGTGACGAGAAATCGCGTGAGTTTGAAGAACATTGTAAGTTCCGTTTGA
CCAAGAGTTTTTTTGATTGTATTTacctttgaaaaagatttattcaAGAA
CCAAGATGTGATATTAAATTAATAAGAGGTTGAGTGTTCCAGGGCCCGGA
GACGCCAACTTGCAACTTGTTGAAAGAATATTACATGTTTGTTCCATCAA
TAGAGTTTTTATATATTGAATGTTAAATGTTTTACATGATATGTTTTTTG
TGATATCCTACGCGCTGAGAGTGAGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038504XLOC_038504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061365-exon-scaffold_357-1491911889:47660..48038TCONS_00061365-exon-scaffold_357-1491911889:47660..48038Clytia hemisphaericaexon
TCONS_00061365-exon-scaffold_357-1510915933:47660..48038TCONS_00061365-exon-scaffold_357-1510915933:47660..48038Clytia hemisphaericaexon
TCONS_00061365-exon-scaffold_357-1575043694:47660..48038TCONS_00061365-exon-scaffold_357-1575043694:47660..48038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_357supercontigscaffold_357:47660..48038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158925	0.994589	0.265742	0.645841	0	0	0	0	0	0.706092	0	0	0.260043	0.684284	0.802359	0.557551	4.47612	1.29899	1.85385	0.757465	4.10889	3.96102	1.23584	3.14289	0.763674	2.00735	8.87509	4.8188	3.80975	3.4628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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