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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061357 ID=TCONS_00061357|Name=TCONS_00061357|organism=Clytia hemisphaerica|type=transcript|length=1744bp
ttcttaattcccatatcaactaagtactacttaaaccttaaacttaaact
ttcatgtCTGAACACAACCAGTGCAAACAgtgttgttgatgtgtaagGCG
AATGCAGTTATATTCAGCCctttcgattgacttccaaatttgccatactc
accaactttgccaaattcacaatttcaatgtcaaaagatcacagcttcat
ggcaaatttgtacatcgctTCGCCACCATTATGATttccgttttgtgatg
cttagtcagcagttttctgtcaGCGTTTGTAAAGTGaacgattttttaac
caatcaaaattgcCGAtcgcattgttttgctttagcattggaaggtcttc
tatttttcaaaatctttggcaaaggtggcaaaattggagcgaaTAGAACA
CAGATctcgtgggaacagtgttttgtatggagacgtatggaggtaagttc
caaatttgccaagaatgccagattcaccacTTCTTTTTTATTAGGCATTT
ATGGCACTCCAATTTtgccaactttgccaaatttttgtcaatcgaatgca
aaataattggcaaacagggcaaaattggcatattttgaagtcaatcgaat
tggctgatTGAATACAACCATTACAGCAACTATGTTTACGGATTTCAAGT
AATCAGTAATGTATATGTAtatcaatatcaaccaatcacaggcGAAATTA
gaactctcaataaaaaatgaaccaatgagaagccttaagcaaaatcaatt
aacaTGTTATATTGTTAACGGGCTACTTTTtcaaagcgggctacacggct
ttttgcacaatgcaattggttctttttgcatgacgacgggcctacactgc
ccagagttgcccgtcgtcaggaaaattcattgtgacgtcgctttttcaaa
ggaaaatgaacaatgtgtTAACAAGATGGCGGCGGTAACGGTTGTGCTGC
GAAAGAAGATGCGAAGAAGATCTTAGAAATTCGACTCCGTAACGACGGAA
AACCACGCCGGATTTCAGAGGttggatttcattttcatcatcacTATCGG
ACGCTGCTGTAAGATCTGCTTTTATCGGTAAATCATCAGAGAATTGATTG
TTAGATTCTCTCTCAATACAAAGTGACCGCTCCGTAAAGCTTACCCTCTT
TTTTTGTAAGCTGGTCTCTTTTGTATCAACGTACTCTTATTCTTCTTGGC
TCTTACGGGCTCTGCTGGAAGACTAGGACTTGCTCCTGGGGGACCACCCG
TTTTAGCCGAAGTGTTGCTGCCTCCATTCCAGCCTTTTCTTTCTTTACCG
GCATCATCGAAAGCAGAAAATGGCCAGTGGATGCAGCGAAGACGACATGT
CAACCAAATCACCAACAAAAAACACCGAGAAGAAAGTCGAGATATCCGTA
TTCCCCGAGACGAAATCATTGGATCAAGGACAATCGTTTTTCCGAATGTT
TTCGATCCCAAGGCATGCTGTACAACAGGAAGAGGAACCAAAGGAAGGCA
AAATTCTCCCCACTTCTCAGCCGATGCTTCCGCCGGTTGCAGAGGAATAT
GCATGCGACATATGTGGGACTATCTTTCGAACCAAAAGTGGCAGGACAAG
ACATCGAAAAAGTTGTTCGAAGAAACACGAAGTCGCTCCAGTGTCAACGG
AAAAAGTAGTGACGCCGAAAGATTTGACGTCATTCCTAATCGTAAGATCG
AACGAGCCACAAGTATGGGCTGACCACACCTACTCTGAGCTAAC Run BLAST on NCBI protein sequence of TCONS_00061357-protein >TCONS_00061357-protein ID=TCONS_00061357-protein|Name=TCONS_00061357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MASGCSEDDMSTKSPTKNTEKKVEISVFPETKSLDQGQSFFRMFSIPRHA
VQQEEEPKEGKILPTSQPMLPPVAEEYACDICGTIFRTKSGRTRHRKSCS
KKHEVAPVSTEKVVTPKDLTSFLIVRSNEPQVWADHTYSEL Run BLAST on NCBI transcript from alignment at scaffold_356:165052..166795 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061357 ID=TCONS_00061357|Name=TCONS_00061357|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at scaffold_356:165052..166795 (Clytia hemisphaerica)
GTTAGCTCAGAGTAGGTGTGGTCAGCCCATACTTGTGGCTCGTTCGATCT
TACGATTAGGAATGACGTCAAATCTTTCGGCGTCACTACTTTTTCCGTTG
ACACTGGAGCGACTTCGTGTTTCTTCGAACAACTTTTTCGATGTCTTGTC
CTGCCACTTTTGGTTCGAAAGATAGTCCCACATATGTCGCATGCATATTC
CTCTGCAACCGGCGGAAGCATCGGCTGAGAAGTGGGGAGAATTTTGCCTT
CCTTTGGTTCCTCTTCCTGTTGTACAGCATGCCTTGGGATCGAAAACATT
CGGAAAAACGATTGTCCTTGATCCAATGATTTCGTCTCGGGGAATACGGA
TATCTCGACTTTCTTCTCGGTGTTTTTTGTTGGTGATTTGGTTGACATGT
CGTCTTCGCTGCATCCACTGGCCATTTTCTGCTTTCGATGATGCCGGTAA
AGAAAGAAAAGGCTGGAATGGAGGCAGCAACACTTCGGCTAAAACGGGTG
GTCCCCCAGGAGCAAGTCCTAGTCTTCCAGCAGAGCCCGTAAGAGCCAAG
AAGAATAAGAGTACGTTGATACAAAAGAGACCAGCTTACAAAAAAAGAGG
GTAAGCTTTACGGAGCGGTCACTTTGTATTGAGAGAGAATCTAACAATCA
ATTCTCTGATGATTTACCGATAAAAGCAGATCTTACAGCAGCGTCCGATA
gtgatgatgaaaatgaaatccaaCCTCTGAAATCCGGCGTGGTTTTCCGT
CGTTACGGAGTCGAATTTCTAAGATCTTCTTCGCATCTTCTTTCGCAGCA
CAACCGTTACCGCCGCCATCTTGTTAacacattgttcattttcctttgaa
aaagcgacgtcacaatgaattttcctgacgacgggcaactctgggcagtg
taggcccgtcgtcatgcaaaaagaaccaattgcattgtgcaaaaagccgt
gtagcccgctttgaAAAAGTAGCCCGTTAACAATATAACAtgttaattga
ttttgcttaaggcttctcattggttcattttttattgagagttcTAATTT
CgcctgtgattggttgatattgataTACATATACATTACTGATTACTTGA
AATCCGTAAACATAGTTGCTGTAATGGTTGTATTCAatcagccaattcga
ttgacttcaaaatatgccaattttgccctgtttgccaattattttgcatt
cgattgacaaaaatttggcaaagttggcaAAATTGGAGTGCCATAAATGC
CTAATAAAAAAGAAgtggtgaatctggcattcttggcaaatttggaactt
acctccatacgtctccatacaaaacactgttcccacgagATCTGTGTTCT
Attcgctccaattttgccacctttgccaaagattttgaaaaatagaagac
cttccaatgctaaagcaaaacaatgcgaTCGgcaattttgattggttaaa
aaatcgttCACTTTACAAACGCtgacagaaaactgctgactaagcatcac
aaaacggaaATCATAATGGTGGCGAagcgatgtacaaatttgccatgaag
ctgtgatcttttgacattgaaattgtgaatttggcaaagttggtgagtat
ggcaaatttggaagtcaatcgaaagGGCTGAATATAACTGCATTCGCctt
acacatcaacaacacTGTTTGCACTGGTTGTGTTCAGacatgaaagttta
agtttaaggtttaagtagtacttagttgatatgggaattaagaa Coding sequence (CDS) from alignment at scaffold_356:165052..166795 >TCONS_00061357 ID=TCONS_00061357|Name=TCONS_00061357|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_356:165052..166795 (Clytia hemisphaerica)
TAGCTCAGAGTAGGTGTGGTCAGCCCATACTTGTGGCTCGTTCGATCTTA
CGATTAGGAATGACGTCAAATCTTTCGGCGTCACTACTTTTTCCGTTGAC
ACTGGAGCGACTTCGTGTTTCTTCGAACAACTTTTTCGATGTCTTGTCCT
GCCACTTTTGGTTCGAAAGATAGTCCCACATATGTCGCATGCATATTCCT
CTGCAACCGGCGGAAGCATCGGCTGAGAAGTGGGGAGAATTTTGCCTTCC
TTTGGTTCCTCTTCCTGTTGTACAGCATGCCTTGGGATCGAAAACATTCG
GAAAAACGATTGTCCTTGATCCAATGATTTCGTCTCGGGGAATACGGATA
TCTCGACTTTCTTCTCGGTGTTTTTTGTTGGTGATTTGGTTGACATGTCG
TCTTCGCTGCATCCACTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061357-exon-scaffold_356-1491911889:165052..166795 | TCONS_00061357-exon-scaffold_356-1491911889:165052..166795 | Clytia hemisphaerica | exon |
| TCONS_00061357-exon-scaffold_356-1510915933:165052..166795 | TCONS_00061357-exon-scaffold_356-1510915933:165052..166795 | Clytia hemisphaerica | exon |
| TCONS_00061357-exon-scaffold_356-1575043694:165052..166795 | TCONS_00061357-exon-scaffold_356-1575043694:165052..166795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_356 | supercontig | scaffold_356:165052..166795 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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