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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061351 ID=TCONS_00061351|Name=TCONS_00061351|organism=Clytia hemisphaerica|type=transcript|length=2000bp
TATCTCTCAAGGCAGGTCCATAACTATCAGTGTTACTAAACGTAAAGAGA
TATAGAGTATGCACATTCATGGATATAAATGTAGTTTGTGCAGTGAAGCA
TACAATTTTCGTAGCACACGAAACGAAAGGAGACAGCATTCAAACagtaa
cttttttttgggaaaactgTATGAAACAAACCATCAAGATATTATCAAGT
ATATAACAATATCTGCAACTAAATTTGGCAAAGGAGATGGGCGGTGATGA
GATGTTGGGCCGAGGTGATTGTCGCTGGTTTTTGGAGAAGATGGCCAAGG
GGATTGTCGTTGGTATTGGGAGATGTTGGCCATGGTGATTGTCGCTGGTA
TTGGGAGATGTTGGCCATGGTGATTGTCGCTGGTATTgggagatgttggc
caaggtgattgtcgctgggtattgggagatgttggccaaggGGATTGTCG
TTGGTATTgggagatgttggccaaggGGATTGTCGCTGGTATTgggagat
gttggccaaggGGATTGTCGTTTGTATTGGGAGATGTTGGCCAACAAGGT
GATGCTCGCTGGTCGATTGGAGGATTGGGACCATGGGGAGGCTGACATAG
CTTTATATTGTCCCAGGTTATCATTTTATTTACATACTTTAAGAGAATGC
TAAAGTTCAGTTGCTTGGAACAAGGTGGAACAAGAAGAAGCCATATGGAT
AAAAAGCTTTCAATATGATTGGTATGAACTCTAAGGCCCTCTAACAGATG
TTTGATTGTGTgatatttaacatttttatttggaaTTAGGTTTTACCTAA
TTTTGGGTGCTACGCAAGGGGCTCGCAAAAATGGGaacaattttattata
tttctGGCCAAACCgaaacaaaaattaattcaacattaaaacataatttt
ttctctaCGAAACGTAACATCgattatttgaaaattctctctttttctct
tttagcttttaaaatttctttcaaacaaaAGGCCTATTTAGTCGATATAA
GTTACGCTTCTAAAGGCACAGaggctttcttttataagatataTTTCCGT
GGTAAAATGGTAAGTTTTTCTTGTCTTAGAGAGTGCTTATAAAaacctta
tataaaaaagagaacaaatttcttttatctCAGGTAGTttacaaacaaag
attttactttttataagcattaatTCAATCCCACAGATTCCAGCTGGATG
TAGTAATCAAGCACGAAACCTGAACATTTTAAAGTTCCTCCTGTCAAGAA
TACACCTAGGCAAGGTGGTACACAGATGGTGCACGTCAAAAAAGTCGGTC
TCTACggcattaaatttttttaagttttaaatatTATTTCACATAACTAT
TATAGACTGAAGTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGT
ATTTCAttatattcatgatgtaatcttttatacggaagcacacaaaataa
tccGGAACTAGTTGAATAGCCTGTTATAACAAGACTGTAAAGTTATAAAC
GGCTCATGCTGCAGATCAGGGGCAAGTCTAATATAGTTTTTCATGGCCTT
TGATAGATTTAGGTTTAATATAAAATCGgtatataaaataataattcatt
TTCTATTACATGTTCTTTTGCtacaaaattttccaagaaagggtATGTTT
ACATTGAGTCATTATCACACGTAGAGCATCAGTTGTACAGATAGCTGGTC
AAGACTTGGGAAGAAGGCAAGAAAATTTaagttatgaagaaaaaatattt
ggtACCCCTCAATTGGCTAGCATGTTGTAGAATGGGCAAGGATGGAGTGA
ACTGTAAAGGAGGTACTACCAATGACAAGTTTTTCATAATTACTAATGGC
TAGAATTGATAGCAATGAGCAACTTTGGGTATCCAAATATTCCGTTTTCC
CTTTCAAAAAAGGGCTCGTAATTGCGGTTGTGATAGATTCTCCTACCGGA
CCGGCTGTACGGCTAGGAGTCTCTCAGCAGCGAGGATGTTAGTGTAAATG Run BLAST on NCBI protein sequence of TCONS_00061351-protein >TCONS_00061351-protein ID=TCONS_00061351-protein|Name=TCONS_00061351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MSASPWSQSSNRPASITLLANISQYKRQSPWPTSPNTSDNPLGQHLPIPT
TIPLANISQYPATITLANISQYQRQSPWPTSPNTSDNHHGQHLPIPTTIP
LAIFSKNQRQSPRPNISSPPISFAKFSCRYCYILDNILMVCFIQFSQKKV
TV Run BLAST on NCBI transcript from alignment at scaffold_356:47010..49009 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061351 ID=TCONS_00061351|Name=TCONS_00061351|organism=Clytia hemisphaerica|type=transcript|length=2000bp|location=Sequence derived from alignment at scaffold_356:47010..49009 (Clytia hemisphaerica)
CATTTACACTAACATCCTCGCTGCTGAGAGACTCCTAGCCGTACAGCCGG
TCCGGTAGGAGAATCTATCACAACCGCAATTACGAGCCCTTTTTTGAAAG
GGAAAACGGAATATTTGGATACCCAAAGTTGCTCATTGCTATCAATTCTA
GCCATTAGTAATTATGAAAAACTTGTCATTGGTAGTACCTCCTTTACAGT
TCACTCCATCCTTGCCCATTCTACAACATGCTAGCCAATTGAGGGGTacc
aaatattttttcttcataacttAAATTTTCTTGCCTTCTTCCCAAGTCTT
GACCAGCTATCTGTACAACTGATGCTCTACGTGTGATAATGACTCAATGT
AAACATaccctttcttggaaaattttgtaGCAAAAGAACATGTAATAGAA
aatgaattattattttatatacCGATTTTATATTAAACCTAAATCTATCA
AAGGCCATGAAAAACTATATTAGACTTGCCCCTGATCTGCAGCATGAGCC
GTTTATAACTTTACAGTCTTGTTATAACAGGCTATTCAACTAGTTCCgga
ttattttgtgtgcttccgtataaaagattacatcatgaatataaTGAAAT
ACTCCAAATCTACCTTTGTCAGCCGACTGACAGAGACACTTCAGTCTATA
ATAGTTATGTGAAATAatatttaaaacttaaaaaaatttaatgccGTAGA
GACCGACTTTTTTGACGTGCACCATCTGTGTACCACCTTGCCTAGGTGTA
TTCTTGACAGGAGGAACTTTAAAATGTTCAGGTTTCGTGCTTGATTACTA
CATCCAGCTGGAATCTGTGGGATTGAattaatgcttataaaaagtaaaat
ctttgtttgtaaACTACCTGagataaaagaaatttgttctcttttttata
taaggttTTTATAAGCACTCTCTAAGACAAGAAAAACTTACCATTTTACC
ACGGAAAtatatcttataaaagaaagcctCTGTGCCTTTAGAAGCGTAAC
TTATATCGACTAAATAGGCCTtttgtttgaaagaaattttaaaagctaaa
agagaaaaagagagaattttcaaataatcGATGTTACGTTTCGtagagaa
aaaattatgttttaatgttgaattaatttttgtttcGGTTTGGCCagaaa
tataataaaattgttCCCATTTTTGCGAGCCCCTTGCGTAGCACCCAAAA
TTAGGTAAAACCTAAttccaaataaaaatgttaaatatcACACAATCAAA
CATCTGTTAGAGGGCCTTAGAGTTCATACCAATCATATTGAAAGCTTTTT
ATCCATATGGCTTCTTCTTGTTCCACCTTGTTCCAAGCAACTGAACTTTA
GCATTCTCTTAAAGTATGTAAATAAAATGATAACCTGGGACAATATAAAG
CTATGTCAGCCTCCCCATGGTCCCAATCCTCCAATCGACCAGCGAGCATC
ACCTTGTTGGCCAACATCTCCCAATACAAACGACAATCCccttggccaac
atctcccAATACCAGCGACAATCCccttggccaacatctcccAATACCAA
CGACAATCCccttggccaacatctcccaatacccagcgacaatcaccttg
gccaacatctcccAATACCAGCGACAATCACCATGGCCAACATCTCCCAA
TACCAGCGACAATCACCATGGCCAACATCTCCCAATACCAACGACAATCC
CCTTGGCCATCTTCTCCAAAAACCAGCGACAATCACCTCGGCCCAACATC
TCATCACCGCCCATCTCCTTTGCCAAATTTAGTTGCAGATATTGTTATAT
ACTTGATAATATCTTGATGGTTTGTTTCATAcagttttcccaaaaaaaag
ttactGTTTGAATGCTGTCTCCTTTCGTTTCGTGTGCTACGAAAATTGTA
TGCTTCACTGCACAAACTACATTTATATCCATGAATGTGCATACTCTATA
TCTCTTTACGTTTAGTAACACTGATAGTTATGGACCTGCCTTGAGAGATA
Coding sequence (CDS) from alignment at scaffold_356:47010..49009 >TCONS_00061351 ID=TCONS_00061351|Name=TCONS_00061351|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_356:47010..49009 (Clytia hemisphaerica)
ATGTCAGCCTCCCCATGGTCCCAATCCTCCAATCGACCAGCGAGCATCAC
CTTGTTGGCCAACATCTCCCAATACAAACGACAATCCccttggccaacat
ctcccAATACCAGCGACAATCCccttggccaacatctcccAATACCAACG
ACAATCCccttggccaacatctcccaatacccagcgacaatcaccttggc
caacatctcccAATACCAGCGACAATCACCATGGCCAACATCTCCCAATA
CCAGCGACAATCACCATGGCCAACATCTCCCAATACCAACGACAATCCCC
TTGGCCATCTTCTCCAAAAACCAGCGACAATCACCTCGGCCCAACATCTC
ATCACCGCCCATCTCCTTTGCCAAATTTAGTTGCAGATATTGTTATATAC
TTGATAATATCTTGATGGTTTGTTTCATAcagttttcccaaaaaaaagtt
actGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061351-exon-scaffold_356-1491911889:47010..49009 | TCONS_00061351-exon-scaffold_356-1491911889:47010..49009 | Clytia hemisphaerica | exon |
| TCONS_00061351-exon-scaffold_356-1510915933:47010..49009 | TCONS_00061351-exon-scaffold_356-1510915933:47010..49009 | Clytia hemisphaerica | exon |
| TCONS_00061351-exon-scaffold_356-1575043694:47010..49009 | TCONS_00061351-exon-scaffold_356-1575043694:47010..49009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_356 | supercontig | scaffold_356:47010..49009 . |
Blast
The following BLAST results are available for this feature:
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