TCONS_00061331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061331
Unique NameTCONS_00061331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061331 ID=TCONS_00061331|Name=TCONS_00061331|organism=Clytia hemisphaerica|type=transcript|length=447bp
TTCAATTTGAATGAATGtatttcaaataaataaaaggtaCTGTTGAAGTA
CATCGTTCAAATAAGAAATTGAAGATATTTAACTGTAGAACTTACCAAAA
ACGTGATGTTTGTTGTGTAAAATGTCTCGTAGGTAACGTAAGGTGTCATA
ATATGTCATGCGGcaaagaaaaaagtataaaaagcaaattttgTAACTGT
CAAAAAACCTTGTAATCTGAAAAATACGCTTATAAATCGTCCTATTAGAT
ATGACATCAATAATATATGtcagaaaactttttttagcctTAAAAATCTT
ATCTTCATAAAAGTAAAAGTTAGCCTGCTGTCCAAAAGATCATCATAGAG
AATAACTGTTGGTATAATGGCGTTTTAGTTAGTAGCGGTCACTGTTTTGT
ACTGATACGAATATCTAATTTCTGATCTCTAATAGATGCGGAGGTTA
Run BLAST on NCBI

transcript from alignment at scaffold_355:415311..415757

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061331 ID=TCONS_00061331|Name=TCONS_00061331|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at scaffold_355:415311..415757 (Clytia hemisphaerica)
TAACCTCCGCATCTATTAGAGATCAGAAATTAGATATTCGTATCAGTACA
AAACAGTGACCGCTACTAACTAAAACGCCATTATACCAACAGTTATTCTC
TATGATGATCTTTTGGACAGCAGGCTAACTTTTACTTTTATGAAGATAAG
ATTTTTAaggctaaaaaaagttttctgaCATATATTATTGATGTCATATC
TAATAGGACGATTTATAAGCGTATTTTTCAGATTACAAGGTTTTTTGACA
GTTAcaaaatttgctttttatacttttttctttgCCGCATGACATATTAT
GACACCTTACGTTACCTACGAGACATTTTACACAACAAACATCACGTTTT
TGGTAAGTTCTACAGTTAAATATCTTCAATTTCTTATTTGAACGATGTAC
TTCAACAGtaccttttatttatttgaaataCATTCATTCAAATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038482XLOC_038482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061331-exon-scaffold_355-1491911889:415311..415757TCONS_00061331-exon-scaffold_355-1491911889:415311..415757Clytia hemisphaericaexon
TCONS_00061331-exon-scaffold_355-1510915933:415311..415757TCONS_00061331-exon-scaffold_355-1510915933:415311..415757Clytia hemisphaericaexon
TCONS_00061331-exon-scaffold_355-1575043694:415311..415757TCONS_00061331-exon-scaffold_355-1575043694:415311..415757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:415311..415757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.290726	0.333875	0.223096	0	0	0	0	0.125615	0.155595	0	0.316119	0.160886	0.674682	0.0846447	0	0.939805	0.153088	0.475382	0	0.765492	0.758206	0.273563	0.363653	0	0.285674	1.17417	1.9219	2.5318	1.69487
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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