TCONS_00061330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061330
Unique NameTCONS_00061330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061330 ID=TCONS_00061330|Name=TCONS_00061330|organism=Clytia hemisphaerica|type=transcript|length=596bp
ttcatgttGACCCCCGCTTTCTTTTGCACGGTAATCAATCTAGAAAGGCC
TTTAGTGCGGTATAAGCAAATGATTTCATTGGGTTAAAAAAGTCAATACA
TCAAGCAATATTACATGATCAGAATTATGTATAACAGGAGCCATGGTCAT
ACTATGATATTTTCTGATATAAATTTGACCatgtatcaatgttttgattt
ttcaagcaggGACTTCTGTAGAATGAAAAATATTGCTTGGCTGGAATTAG
CACCACCATAACAGCATAACCGTACTGGCCGCGCCATACTGGCTATGCGA
ACTCAAAGGATTGCGTAGTGTACATAGTTTATTGTACAGTAAATTTGGAT
GGCCGCGTGGGGTGCCTCTACAGTAGGTGCGTGGTGGTGCACAAGTGACA
TGTTCGGTCCGGGGTATAGGCATGGTCGTGACAATGACATGAGACCATGA
GTGATCGAAAGAATAGacccttttttttttcattcgcCATCATCATCAGC
CCTCGAAtttcaggtcggcattcggcagTGCCGACCTAAAAGCCGACCAA
AGAGTGCGTATGGTCGGCAGTTCATTGCCGACCATATTCATTGATT
Run BLAST on NCBI

transcript from alignment at scaffold_355:383059..383654

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061330 ID=TCONS_00061330|Name=TCONS_00061330|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at scaffold_355:383059..383654 (Clytia hemisphaerica)
AATCAATGAATATGGTCGGCAATGAACTGCCGACCATACGCACTCTTTGG
TCGGCTTTTAGGTCGGCActgccgaatgccgacctgaaaTTCGAGGGCTG
ATGATGATGgcgaatgaaaaaaaaaagggtCTATTCTTTCGATCACTCAT
GGTCTCATGTCATTGTCACGACCATGCCTATACCCCGGACCGAACATGTC
ACTTGTGCACCACCACGCACCTACTGTAGAGGCACCCCACGCGGCCATCC
AAATTTACTGTACAATAAACTATGTACACTACGCAATCCTTTGAGTTCGC
ATAGCCAGTATGGCGCGGCCAGTACGGTTATGCTGTTATGGTGGTGCTAA
TTCCAGCCAAGCAATATTTTTCATTCTACAGAAGTCcctgcttgaaaaat
caaaacattgatacatGGTCAAATTTATATCAGAAAATATCATAGTATGA
CCATGGCTCCTGTTATACATAATTCTGATCATGTAATATTGCTTGATGTA
TTGACTTTTTTAACCCAATGAAATCATTTGCTTATACCGCACTAAAGGCC
TTTCTAGATTGATTACCGTGCAAAAGAAAGCGGGGGTCaacatgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038481XLOC_038481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061330-exon-scaffold_355-1491911889:383059..383654TCONS_00061330-exon-scaffold_355-1491911889:383059..383654Clytia hemisphaericaexon
TCONS_00061330-exon-scaffold_355-1510915933:383059..383654TCONS_00061330-exon-scaffold_355-1510915933:383059..383654Clytia hemisphaericaexon
TCONS_00061330-exon-scaffold_355-1575043694:383059..383654TCONS_00061330-exon-scaffold_355-1575043694:383059..383654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:383059..383654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.11145	0	0	0	0.198713	0.117861	0.237722	0.195841	0.343426	0.859447	0.508909	0.0993045	0.738157	0.119132	0	0.257369	0	0.477896	0.123391	0.423757	0.339736	0	0	0.102358	0.202465	0	0	0.163566	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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