TCONS_00061324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061324
Unique NameTCONS_00061324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061324 ID=TCONS_00061324|Name=TCONS_00061324|organism=Clytia hemisphaerica|type=transcript|length=831bp
aatcagtgccataacatattggcaatttaggctattttaccaaattttga
aaattgaagttcgagcgagaatgtcaatttcgggccttcaacttgatttc
atcgaataCTTCGATCTGGGAGGTATTTATTGGTTTCTAAGCTGTATTTT
TGATcttttgaatcctcagatcctaaggttcttaagtctagcgttaaaac
tcagagttaaactttacccttccaacctaatttagagcgcttccaaattg
tttgtggttataGAATTTCTTCggaaatttcccttttgtgccaagtattt
cgtcactgattgtagcctgaaaataattgaaaattaatGTCCAGTATGAT
ATCAGGAAATAAGTGAACTGATATCTTTGAGTAGACATGTCAGTTCGATG
CATAGCCTCGAGAATTTTTTATCAGTTTTGAAAGTAATCCTTGACCAAGT
TCCTCCCTATTTCATCATAGTGTATTTAGACAAAAGAAGTTATATAATAT
TTATTCATCGAGTGATTTACCTCACTCTCATGCTTCAGGTAGCTTGTATC
AGAGAAGTTAATTAATTGAAAATTCTGATAACgggccactcacatatcga
tgcTTTCCACCACTCCCGTCACAGTGACACGAGGGGTGGGGGTCAGAGGC
AGTGACGCTAAGAAAATCTTGGAAATAGTGTTGGAATGACGTTAGTGTTG
AGAAAAATTGGTATGTGAGTGGCCCCTAACAAAATAATCCATGATTGCAT
AGGAAATATTTATAtgtaaaataatttatttttctccCATCAATTGTTTA
ATAGTATTTactaaaaattattaaatttcgT
Run BLAST on NCBI

transcript from alignment at scaffold_355:209790..210620

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061324 ID=TCONS_00061324|Name=TCONS_00061324|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at scaffold_355:209790..210620 (Clytia hemisphaerica)
AcgaaatttaataatttttagtAAATACTATTAAACAATTGATGggagaa
aaataaattattttacaTATAAATATTTCCTATGCAATCATGGATTATTT
TGTTAGGGGCCACTCACATACCAATTTTTCTCAACACTAACGTCATTCCA
ACACTATTTCCAAGATTTTCTTAGCGTCACTGCCTCTGACCCCCACCCCT
CGTGTCACTGTGACGGGAGTGGTGGAAAgcatcgatatgtgagtggcccG
TTATCAGAATTTTCAATTAATTAACTTCTCTGATACAAGCTACCTGAAGC
ATGAGAGTGAGGTAAATCACTCGATGAATAAATATTATATAACTTCTTTT
GTCTAAATACACTATGATGAAATAGGGAGGAACTTGGTCAAGGATTACTT
TCAAAACTGATAAAAAATTCTCGAGGCTATGCATCGAACTGACATGTCTA
CTCAAAGATATCAGTTCACTTATTTCCTGATATCATACTGGACattaatt
ttcaattattttcaggctacaatcagtgacgaaatacttggcacaaaagg
gaaatttccGAAGAAATTCtataaccacaaacaatttggaagcgctctaa
attaggttggaagggtaaagtttaactctgagttttaacgctagacttaa
gaaccttaggatctgaggattcaaaagATCAAAAATACAGCTTAGAAACC
AATAAATACCTCCCAGATCGAAGtattcgatgaaatcaagttgaaggccc
gaaattgacattctcgctcgaacttcaattttcaaaatttggtaaaatag
cctaaattgccaatatgttatggcactgatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038475XLOC_038475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061324-exon-scaffold_355-1491911889:209790..210620TCONS_00061324-exon-scaffold_355-1491911889:209790..210620Clytia hemisphaericaexon
TCONS_00061324-exon-scaffold_355-1510915933:209790..210620TCONS_00061324-exon-scaffold_355-1510915933:209790..210620Clytia hemisphaericaexon
TCONS_00061324-exon-scaffold_355-1575043694:209790..210620TCONS_00061324-exon-scaffold_355-1575043694:209790..210620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:209790..210620 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0995123	0	0	0.292198	0	0.087414	0.294841	0.122589	0.0976978	0.0596753	0	0.0945505	0.0830862	0.241302	0	0.104252	0.0976621	0.0438874	0.0777425	0.075623	0	0.164606	0	0.0680257	1.74036	1.86859	0	0.148944	0.195174	0.459062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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