TCONS_00061315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061315
Unique NameTCONS_00061315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061315 ID=TCONS_00061315|Name=TCONS_00061315|organism=Clytia hemisphaerica|type=transcript|length=2469bp
actttttgaatggtcccaaaCGTGTTTCCCGGGTattaaatttcacgatt
ttgtatCTTCGAAAAATTTAAACGGTATTAAACGGTATGTAATCCAGTTC
CATGACTAAAATTCTTTGTCCTATTTTGAAAGATGAAAGTTCCACTGATG
AAACACCAGAAGAACCACCCCCACCACCACCTGCCCCTATCATTGAAACT
CAATCTGGGAAACGACTTAGAATCGACAGAGAATCCCACGAACTCTTACA
ACGACTAAGAGAAGCTGTCATTGTTGTAACAGATGAATCAGAATCAGATC
CAGTTGATTTTGACGAAGTTGAGCTTAACCATGAGCCAGACGGTCCAGTG
GAGTTAAATCATGAGCCATACGGTCAAGTGGAGTTAAATCATCAGCCAGA
CAGTCCAGTGGAGTTAAATCATCAGCCAGACGGTCAAGTGGAGTTAAATC
ATCAGCCAGACGGTCCAGTGGAGTTAAATCATCAGCCAGACGGTCTAGTA
AATGAAAACCAAAATCCCATCGTTAACGAAGTATTCACTTTTGACGAGAT
ACCGATGATGTTCAAAACAATGAAAGATGCATCCATGTTTGTTGACgact
ttcaaattcaaaataattcaaaattctcGACTTTTAAAACTAACTACAAG
CCTGAAAACGATGAAACAGccACTGTCGATCTCAACAACCACAATGTACG
AACAGATCATGTACGAAGATATCAAACGTCAAAATTCCATAAATCAAATT
CCTTTCACTGGATACCCTTTCATTGTTATcggaaaaaaacaatttgaatg
cACACATGGTAAAGACCGAAATGTCaaacaaaaaaggaaaaggaagCAGG
AAAAGTTACAACAGAAAGAGAATGAGTTGAACTATGGCAAAAGCAAATTT
CTCCCTCAAGACACCAAGAAAGTTAATTGCCCAGCAAAAATAACGatgca
aaattttattttcttcccAGATTACAAgGTAAACACAAATAGGAACACAA
ATACGATATATTATAAGCGCCTCGTGAACAACAAGCTAAATGCCGATTGG
GCCACAAATCCAGGTGCAATCAAAATGGAGCAGCAAACAATCGTCCACAT
CGCCGATAACCATTCAGGGCATTTGTTAAACAaaTTTGCTGGCCTTTCAC
AACAAATTGACAAAAGACTGGTGAGGAAGATTCACGAATCGGTTGGTCAT
GGTGTACGCGATGTTCGAGAAATGCAGCGAGCGCTCAGGGCCTATTGTGA
TCTCCGACCTGTATCGAGGTTCAATTCCACCGAGCAGCTCAAGTCGTCGA
TTTTATCCCGAGCCAAGAGACATCCGAAATCATATGAACATTGCTGCGAA
TAAGTATAGGCGATCCAAAATCGATCAGGAAAACTTGGAAATGATGATAA
ACGAGTGGCGAAGATCAAATTTGGATGATAAATTTCATTTTCGGCGGTAT
CATTCTGGCACTGCTGAGGAGGCTGAAAGACAACAAATTTATGATGAGAA
TGGGAATTGTATTAGTGAAGAAAATTTATAATCATAATGTCCATTTGAAG
TCTTATAGAATCTTAGGAATGTTTAGCATATGAAttggtttttttttact
ttgaagaCCAGTTTTCCTGTTTCAATTTGGGTTGACATTTGACTTAAGTC
TTCCGTAACTATTAGGTATTTGTTTTTGCTCagttaaaaataataatttt
cttacaTGTGATCAACGATGGTTCTTCAAGACTGCTCTTTGTCCACCAAA
CTAACTTCCAAAGACGTATGCTAAAACGatatggaaataaaatttgttta
CTTGATGCTACGTACAAAACTACTAAGTACTCGCTCCCTTTGTTCTTTGT
GGCTGTTAAAACCAACGTAGACTATCAAGTGGTAGCAAGTTTTGTTACTC
AAGATGAGACAACTGCTGCAATTACAGAGGCCTTATCTATTATTAAATCA
TGGAATCCTTTTTCTGATTGGGATTGGAACCCTACATGCTTTATGGTGGA
TAATTGTGAAGAAGAAATTCAATCAATCCAGAAGCTGTTTCCAAGCTGCC
GAGTGCTTTTATGTGACTTCCATCGAGAGCAGGCCTGGGGTCGTTGGCTG
TCTGCTACAAAGAATGGAATGAGACAACACAAAAAGAGAGCTTTAGAATT
TCTTCGAGCCATTGCCAGATCCGAAAGTAATGTCGAATTTGAGCTAAACT
TCCAACTTGTGAAGGAAGATCTTATatggaaagaagaaaatttcagaaat
tggATAGAAAGAATATGGTTACCATGTTTATCAAATGTGGGTGAGAGCAT
ACAGAGATGGTCTCATTGAGGTCCCAGTCCACACAAATAATGGCGTGGAG
CGGAAAAATAAAGACTGCATGGATACCTCAAGCAGCATTCTGACAAAAGT
TTAAGTGGAATGGTTTctgtactgaaaaaaatttttgaaagttctttaaa
aagaattaaaatataagca
Run BLAST on NCBI

transcript from alignment at scaffold_355:393716..397796-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061315 ID=TCONS_00061315|Name=TCONS_00061315|organism=Clytia hemisphaerica|type=transcript|length=4081bp|location=Sequence derived from alignment at scaffold_355:393716..397796- (Clytia hemisphaerica)
ACTTTTTGAATGGTCCCAAACGTGTTTCCCGGGTATTAAATTTCACGATT
TTGTATCTTCGAAAAATTTAAACGGTATTAAACGGTATGTAATCCAGTTC
CATGACTAAAATTCTTTGTCCTATTTTGAAAGATGAAAGTTCCACTGATG
AAACACCAGAAGAACCACCCCCACCACCACCTGCCCCTATCATTGAAACT
CAATCTGGGAAACGACTTAGAATCGACAGAGAATCCCACGAACTCTTACA
ACGACTAAGAGAAGCTGTCATTGTTGTAACAGGTGAGGAGGAAGAGGAAA
ATCACATGATTTATTTAAGTTAAAGTAATTATTCTCAAGATTAATCTCAC
TACACAGTTTCATTATTGAAAGAATATCTTTACATTCTCTATCTTGAAGA
ACGTCCAAAAATGTTCATTACCATAATAATTCTTCCTCTCAGATGAATCA
GAATCAGATCCAGTTGATTTTGACGAAGTTGAGCTTAACCATGAGCCAGA
CGGTCCAGTGGAGTTAAATCATGAGCCATACGGTCAAGTGGAGTTAAATC
ATCAGCCAGACAGTCCAGTGGAGTTAAATCATCAGCCAGACGGTCAAGTG
GAGTTAAATCATCAGCCAGACGGTCCAGTGGAGTTAAATCATCAGCCAGA
CGGTCTAGTAAATGAAAACCAAAATCCCATCGGTAATGCTATATTCATAA
CACTAAACGTCTTTGTAATTGAGCTTGACAGATACACATTTTGAACTGAA
AGAAAAAAGAATTAAACGGAGTGAATACATTTGAATTCCGTACCCATATG
TGCCCTTTAGAATCCTGGGGGAAGGGGGGGGCTGAAACCATGATCTGGCA
TAGGTATCAGTAGAGCTAATCAACGTTTCATGTACTATTAATTTGTTTCA
GTTAACGAAGTATTCACTTTTGACGAGATACCGATGATGTTCAAAACAAT
GAAAGATGCATCCATGTTTGTTGACGACTTTCAAATTCAAAATAATTCAA
AATTCTCGACTTTTAAAACTAACTACAAGCCTGAAAACGATGAAACAGGT
AGCCATCATTTTATTATCTTTTGTTATGCCTTAAGAAAGTAGATGGGGCT
CCAGGAGGGGGATCTTTCGTCAAATAACGGCATATTGGTAAAATGATAAT
CTAAGGAAAGTTTTGAAGAATCTTTAATTTTTTTAGCCACTGTCGATCTC
AACAACCACAATGTACGAACAGATCATGTACGAAGATATCAAACGTCAAA
ATTCCATAAATCAAATTCCTTTCACTGGATACCCTTTCATTGTTATCGGA
AAAAAACAATTTGAATGCACACATGGTAAAGACCGAAATGTCAAACAAAA
AAGGAAAAGGAAGCAGGAAAAGTTACAACAGGTATTAAATCATTATACAC
CTAACCTTTTAAAAAAACAGACAAAAGATTATATAAATAAAACCCATAAA
CACTGAAGTCTCATGAGATTTGTGCATTGTGAGAAAGGCAATAATTAAAT
TTTTCTTCAAAGAAAATCAAAAGCCTACGGTGTTAAGTGTGGCAGGACTT
TTAATATCAATATTTTTCAATTTCGTTTTTTTAGAAAGAGAATGAGTTGA
ACTATGGCAAAAGCAAATTTCTCCCTCAAGACACCAAGAAAGTTAATTGC
CCAGCAAAAATAACGATGCAAAATTTTATTTTCTTCCCAGATTACAAGGT
TAAAATTATTCTTTTATGTAGGATTTTTTAAATCACTCTCTTTATTTAAA
GGATTGTTCAAAGTGGAAGAGCAAATTTGAAAGCTCGACTCGTTCTAAGA
TATAAAGATATAATCATTTGAATTTTAGAAGAAAAGGTTTGAATTTAGGA
AAAACGAAGAGAAAGAGTTGATATTTTTTATAAGTAACATCAACACAAAG
TTATTTTATTTTTCCTATTGGGATAATAAAACTATTGATAAATTACTGTC
TAGAAGAAAAAGGAAAGGAGTAAATGAGGGCTGTGACATATCTACTTTCT
AACCACAACAATTTGTTATACAGGTAAACACAAATAGGAACACAAATACG
ATATATTATAAGCGCCTCGTGAACAACAAGCTAAATGCCGATTGGGCCAC
AAATCCAGGTGCAATCAAAATGGAGCAGCAAACAATCGTCCACATCGCCG
ATAACCATTCAGGGCATTTGTTAAACAAAGTGAGTGAAAAAAAAAACTTA
AATAGACTACACCTATCAAGATAAAAACATCAAGAGAGGTAGTTAGGCAC
GATTTAGCCGTGCTAATCAATATCATCCTATTCAAATCAATAGGTGAAGC
AATGCAAAAATTCAGACTTTTGACGTAAATTGTCACGGGTAAATTCATTC
CTAAACCGTTATTTTTATCTTGATAGGTATATTGAGTGAAAAGGGTATTC
TAGGATTATTACCTGTCATATAGTTGATTTGGATTTTAAAATAAGGGTTT
CACTCCAATTTAGTTTGCTGGCCTTTCACAACAAATTGACAAAAGACTGG
TGAGGAAGATTCACGAATCGGTTGGTCATGGTGTACGCGATGTTCGAGAA
ATGCAGCGAGCGCTCAGGGCCTATTGTGATCTCCGACCTGTATCGAGGTT
CAATTCCACCGAGCAGCTCAAGTCGTCGATTTTATCCCGAGCCAAGAGAC
ATCCGAAATCATATGAACATTGCTGCGAATAAGTATAGGCGATCCAAAAT
CGATCAGGAAAACTTGGAAATGATGATAAACGAGTGGCGAAGATCAAATT
TGGATGATAAATTTCATTTTCGGCGGTATCATTCTGGCACTGCTGAGGAG
GCTGAAAGACAACAAATTTATGATGAGAATGGGAATTGTATTAGTGAAGA
AAATTTATAATCATAATGTCCATTTGAAGTCTTATAGAATCTTAGGAATG
TTTAGCATATGAATTGGTTTTTTTTTACTTTGAAGACCAGTTTTCCTGTT
TCAATTTGGGTTGACATTTGACTTAAGTCTTCCGTAACTATTAGGTATTT
GTTTTTGCTCAGTTAAAAATAATAATTTTCTTACATGTGATCAACGATGG
TTCTTCAAGACTGCTCTTTGTCCACCAAACTAACTTCCAAAGACGTATGC
TAAAACGATATGGAAATAAAATTTGTTTACTTGATGCTACGTACAAAACT
ACTAAGTACTCGCTCCCTTTGTTCTTTGTGGCTGTTAAAACCAACGTAGA
CTATCAAGTGGTAGCAAGTTTTGTTACTCAAGATGAGACAACTGCTGCAA
TTACAGAGGCCTTATCTATTATTAAATCATGGAATCCTTTTTCTGATTGG
GATTGGAACCCTACATGCTTTATGGTGGATAATTGTGAAGAAGAAATTCA
ATCAATCCAGAAGCTGTTTCCAAGTAAGAAAGATTTACTTTTTGATTTAT
TTTTACTTTTTGATTCCCTTTCTCTCAAAATGTACAATATTTATTTTAGA
TACCATACAAAACTTTGTTATATCTTTCTAATATAATGCATTTTATAACA
ATAGGCTGCCGAGTGCTTTTATGTGACTTCCATCGAGAGCAGGCCTGGGG
TCGTTGGCTGTCTGCTACAAAGAATGGAATGAGACAACACAAAAAGAGAG
CTTTAGAATTTCTTCGAGCCATTGCCAGATCCGAAAGTAATGTCGAATTT
GAGCTAAACTTCCAACTTGTGAAGGAAGATCTTATATGGAAAGAAGAAAA
TTTCAGAAATTGGATAGAAAGAATATGGTTACCATGTTTATCAAGTAAGT
TTATGTAAAAAGGGAATAAGATTCTTGATTGCAAACTATTGAAAAAGTAT
TATGAGCACATGGTTTCAATAAAAATTGGCTGCAGACAGGAATTTTGTTT
AAAATCTGCATTTTAAAATAAGGTTTATACACCGTCTTTCTTGTAGATGT
GGGTGAGAGCATACAGAGATGGTCTCATTGAGGTCCCAGTCCACACAAAT
AATGGCGTGGAGCGGAAAAATAAAGACTGCATGGATACCTCAAGCAGCAT
TCTGACAAAAGTTTAAGTGGAATGGTTTCTGTACTGAAAAAAATTTTTGA
AAGTTCTTTAAAAAGAATTAAAATATAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038466XLOC_038466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061315-exon-scaffold_355-1575043694:397515..397796TCONS_00061315-exon-scaffold_355-1575043694:397515..397796Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:397115..397354TCONS_00061315-exon-scaffold_355-1575043694:397115..397354Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:396749..396895TCONS_00061315-exon-scaffold_355-1575043694:396749..396895Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:396416..396610TCONS_00061315-exon-scaffold_355-1575043694:396416..396610Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:396099..396212TCONS_00061315-exon-scaffold_355-1575043694:396099..396212Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:395618..395773TCONS_00061315-exon-scaffold_355-1575043694:395618..395773Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:394424..395333TCONS_00061315-exon-scaffold_355-1575043694:394424..395333Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:394053..394292TCONS_00061315-exon-scaffold_355-1575043694:394053..394292Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1575043694:393716..393900TCONS_00061315-exon-scaffold_355-1575043694:393716..393900Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:397515..397796TCONS_00061315-exon-scaffold_355-1510915933:397515..397796Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:397115..397354TCONS_00061315-exon-scaffold_355-1510915933:397115..397354Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:396749..396895TCONS_00061315-exon-scaffold_355-1510915933:396749..396895Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:396416..396610TCONS_00061315-exon-scaffold_355-1510915933:396416..396610Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:396099..396212TCONS_00061315-exon-scaffold_355-1510915933:396099..396212Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:395618..395773TCONS_00061315-exon-scaffold_355-1510915933:395618..395773Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:394424..395333TCONS_00061315-exon-scaffold_355-1510915933:394424..395333Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:394053..394292TCONS_00061315-exon-scaffold_355-1510915933:394053..394292Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1510915933:393716..393900TCONS_00061315-exon-scaffold_355-1510915933:393716..393900Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:397515..397796TCONS_00061315-exon-scaffold_355-1491911889:397515..397796Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:397115..397354TCONS_00061315-exon-scaffold_355-1491911889:397115..397354Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:396749..396895TCONS_00061315-exon-scaffold_355-1491911889:396749..396895Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:396416..396610TCONS_00061315-exon-scaffold_355-1491911889:396416..396610Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:396099..396212TCONS_00061315-exon-scaffold_355-1491911889:396099..396212Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:395618..395773TCONS_00061315-exon-scaffold_355-1491911889:395618..395773Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:394424..395333TCONS_00061315-exon-scaffold_355-1491911889:394424..395333Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:394053..394292TCONS_00061315-exon-scaffold_355-1491911889:394053..394292Clytia hemisphaericaexon
TCONS_00061315-exon-scaffold_355-1491911889:393716..393900TCONS_00061315-exon-scaffold_355-1491911889:393716..393900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:393716..397796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0462467	0.172238	0	0.026156	0.956846	0.925613	0.943099	1.45061	0.514702	0.847273	0.504351	0.110668	0.428803	0.146483	0	0	0	0	0	0	0	0	0.159698	0.119269	0.607725	1.07581	0	0	0.0624705	0.143567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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