TCONS_00061297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061297
Unique NameTCONS_00061297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061297 ID=TCONS_00061297|Name=TCONS_00061297|organism=Clytia hemisphaerica|type=transcript|length=1877bp
AAAGGATTTCCAGTAAAGATAGCGAGAAATTTCTGCTCGAGAAATTTATT
TCCATATTTTCTAATATGTGGTTTGTtttctctttgatttttcttcctCT
ATTATTCGTCAAATCAAAGTGTAATGAGATTTTGGGCATTCCAGAAAACA
ATCATGGACAGGAAGCAGTTACTTTTGTTGGTGAACAAGAAATAGCCTTA
CCAAAGCACTTCCGACTCGGAGTTATTCCAGTTTTATCTCCAGAATGGAT
TTTCAAATTCTCAATCCGTTTTCACTCGTTGGATTATGTCGGGGATGGAA
CATTCTCTTATTGCACACTTCTTCACCTCACTCAAGGGGGAAACAATGAT
GTGTACGGGGATAGAACCCCAAATATTGCGATCGCAGgaaacccAACATT
GAACGAGATGAGAATTAATGCACCCGTCAACGGAGATAAATCATATCGAC
AGAACATACCTTTCACCCTAGCAGTCAACGAAACTATGGATGTTGAAGTT
CATCAACGATACATAAGCAACGGTGAATATCGATATTTCATTCGCATCAA
TAAAGAAGAAATTCATTCTGTCGTCAATAcccaagcaaaacaattttata
atgtTAAAGTGATTGCTGGTCAAAAATTCACTCGTGCTGAGGTTTGCCCT
GCATCaattaaaaatgtcaaacaCACGAACTTTCTGTAAAATAAAAACGT
GGATATTACAAAGTGCACgaattttttactattttattcAGGATGAATCT
CTCAGGGTTAGCTTTTTAAGATGGTTTATATGCAGTAAAGATAATAAAAT
ATGAGGATATAGGGGTACCAATGATCTTCAAGTCTCATGAGAAAGTTTTG
TTGGAGCTAAACCTTAGCTCAGGTTAATTCCAAGTCGAATGAAGTACATC
CCGCCACCACATCGAGGTGGCTATGAAATAGTATATTTCGGCTGCCGGTT
ATTCTTTCCTTCGTCTATATATATTCTACCGTCAAGCCCCTTTTCAGCGC
AGTTTATCTCAGTCTCAAATTGATCACAACTTCAATCTTTCATAACACGA
ACAACGACGAACAACGACCACCATTTTGCCGTTATACGCGTCAACAACAC
CAGCGTTGAATCCAACGGCTCGCCCAAACTCCATCAACAGCACCACTTTC
TTCAGTAGGCGATGGAACCAATATCCTGGTAACATTAATCTCCTTAATCA
ACAGCTGGCTTCGTCCATTcaaataacgaacgaacgacaaCCTCTTCACC
CACTACCGCCTCAAACGCCCTCACATGAGCGATCAACAACAATAATGGTA
GCCTCGCTACGAGTGAAAACGTCCATCAACTCTCATTGCCACGGTTAACC
CATTCTGATTGCCACCCCTCCTTTAATTTTCGGTATGAATCTTTGTATTG
TTTTCTTAAAGTCTTTAACGCTGGTAAAGTTATTGAGGCAATCTTATCAG
TATTTGTTCCTTTTTTCTCGAATCAGGATAAATTCTGGAATTTTGTTCAA
GGCGCATAAAGATTTTCTGCATTCTGAGTGATTTGTGGCTGGAGTGACAC
TTGTCATCGTTTCTGTAGTTGGGATTGTCGTCGTGCTGCTTCATTAGTCT
TTTAAAAGAGATGGGGATAAAGGGCTTCGATAAAAAGGATCCTAgctctt
attttttttattaccttTGTATCTCTGTCTTATTATGGTTAGGTCAAGTT
AAATTTAGTTTGTGGTTAAGCACTCTGGTTAGAGATCGATGcgttttgtt
tctttttgtttcgaagaGTTCTAAATGTAGGAATAGATTAAATTTGCCCA
TTTGAAATTCGTTGAATATTTTGCATCTGCTTTCTTTTTGAAATGGCAAG
TTGTTGTTGTTACTTGAAGAAAAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00061297-protein

>TCONS_00061297-protein ID=TCONS_00061297-protein|Name=TCONS_00061297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
RISSKDSEKFLLEKFISIFSNMWFVFSLIFLPLLFVKSKCNEILGIPENN
HGQEAVTFVGEQEIALPKHFRLGVIPVLSPEWIFKFSIRFHSLDYVGDGT
FSYCTLLHLTQGGNNDVYGDRTPNIAIAGNPTLNEMRINAPVNGDKSYRQ
NIPFTLAVNETMDVEVHQRYISNGEYRYFIRINKEEIHSVVNTQAKQFYN
VKVIAGQKFTRAEVCPASIKNVKHTNFL
Run BLAST on NCBI

transcript from alignment at scaffold_355:211443..215531-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061297 ID=TCONS_00061297|Name=TCONS_00061297|organism=Clytia hemisphaerica|type=transcript|length=4089bp|location=Sequence derived from alignment at scaffold_355:211443..215531- (Clytia hemisphaerica)
AAAGGATTTCCAGTAAAGATAGCGAGAAATTTCTGCTCGAGAAATTTATT TCCATATTTTCTAATATGTGGTTTGTTTTCTCTTTGATTTTTCTTCCTCT ATTATTCGTCAAATCAAAGTGTAATGAGGTGGGTAGATTTATGGGTACTA AAGATTTCTTTTTAAAACTCTGCATCGAAAAGTTCAGACGTGGAGTTTAT CTACTTCTTTTTTTGGGTCGTTTCGTACGGTGAAGGCATCTTCATAAAGA CGAAAGACATGTATCTATTTTTCGGATCCGGTATGCGGGAATAGTGTCAG GATCTGCAGGCGACCTGGTAGGGTTGGGTATGGGTGTGGTTTGGGTGTGG TTACGTATCAGATTGGCTAGGAATTGGGTTATTATCAGTTAGGGTTAGGG TTGGAGCTCGAAACAAGCACTCATTACTGACACTCAAACAAGTCATTCAG TAAGTTAGAAAACATAGAAAATAACTCACAAAAAACCAGAAAGTCAGAAA AACTACAAACAAGAGACTGGAAAGTACGAAATAAGTCCAGATCTGTCTTT CGTCTTTGTGAAGAAGCCACGACCGTTTCGTACCACTTTTTGGAAAAGCT CCTGAATAAAATTACTAATCTGAAGAGCATTTGGATTCCCTTGTCTCCCC TTTAAAAAATTGAGACATGCACGATAAAATTCTTACAGTCCATCTCCACA GTTTAAATTTCGGAGAATGCTGAGCTGTGGGCCTCACGGTACCCAATAGG AGATCAAGTCAAAGTAAACAGTGTCTGAAAAAAGGCTTGACAAACAAACC CATAGCCTTTGCTAATGGATGTACATTTCATGTTTTAGATTTTGGGCATT CCAGAAAACAATCATGGACAGGAAGCAGTTACTTTTGTTGGTGAACAAGG TAAGAAATATTCTCTTATTTGAAGAATGATATTTCAGTCTATATTGAATT ATGCATTTGGACTTTTGAGGACGGCCGAGTGTCTTAAGTGATTTGCAAAA ACCCTCAGTTTTGACCCGCAAAATCAAGAACAGTAAAAGTAGCAGAACAC ACACACCACAAAAACTCCTGACTGATACTACTGACGGAGGAGGATATCTT TTTTTTTTATTCTCAAATGCCCCAGTATTTTTTTTTCTCCAAAAAAGTCA AAAGAGTATTTGCGCTGTTACAATTAATAAACCGTAAAATTATTCTCCAA ACAAATCTGTTGTAACAAAAATAATTGACATAATTCAGAGCTATTTAGAG CTAAAAACTCTTATAAACTGGGTTCTATTAAAAAAACAACCAAGTTAAGC TTTGACATATACACTTTTATTGGTAGTCTTTTTATGTATGCATTTTGTTT TAGAAATAGCCTTACCAAAGCACTTCCGACTCGGAGTTATTCCAGTTTTA TCTCCAGAATGGATTTTCAAATTCTCAATCCGTTTTCACTCGTTGGATTA TGTCGGGGATGGAACATTCTCTTATTGCACACTTCTTCACCTCACTCAAG GGGGAAACAATGATGTGTACGGGGATAGAACCCCAAATATTGCGATCGCA GGTACTATATTTTTTATCAAGAAATCTTCTCTCAAAATTCGGAAGTTTTG CGGAATTTAATTTCGCAGTTGAGAAAATTTTTTTGTTTAAGATGTCCTAT TTTGCCCTGGAAAGACGAATTTTATAGGTGATTTTTTTAATCATGAGAAT TCGTATTTCGCGGAATTTAATTTCGCAGATTTGTTGAGAAAGCACGAAAT TAAATTCCGCGAAAATTTGTTCCGCAAAAATTTCCTCCCTTAAGGTACCT TGAGTGTATAATTTTTTTCCGACACCCGGACCGGGGAGGTGCCAAAAGTT CAATCACAATCTGCACCTGATTTTGGTCTGAGACGAGGGTAGACTGGAGA TCCATGCTGTGATTTCTTATTCTATATACTGATGGCGAAATATATAGCAT GGTATGGGCTGAGAGTTTGAATTTCCCAGAACGTATATAGTAATAACGGT TGAAAACTTAGCCAATCAAATTTTGTTATTCTTTTACTGGTCACACTCCG CCCTTAGAGAAAGCGCAATTTCCGAAATTTTGTTTTTATTTTAGTAAGTG AGGACAGCACTAAATTCGAATTTGCCACTGTAAACATTTTGAGGCAGAAA TCTGCCTCACAGGTCATACCCGTCATGTATATACATCAGATTATAAAAAT ACAGGACAGTTCTCCTGTCTATTACGAGGGTGGCATTTTGATGTAGAGGG TAAACAATTTTTTATATCTCGAGGGTTTAAATTTCTATTAAAGGTATAGA GTAGTTTTTTAAGCATTTGAGGCTGTGAAAAGTAAAAGTTTTCCATAAAA TCTTGCCACTGTAAATAACATCTCCATTTTTTCATTATCAATAAATATAA ACAAGTATATAGAATTCTTAAGAATTGAGCTGTCCAGCAAAGTCCGTTTC CGCCATTATGGATGCAAACTTTTGAATTTGTAGATGCAACACCTCGCAGA TCAAACATTTGCTTTCTTAGTGGCAGAAGTTAAACGTAACTTGAGAAAAG ATGAAAAACCTCTCTATCTATATTATAGTTAATTTTTTTTTTTTTTAAGG AAACCCAACATTGAACGAGATGAGAATTAATGCACCCGTCAACGGAGATA AATCATATCGACAGAACATACCTTTCACCCTAGCAGTCAACGAAACTATG GATGTTGAAGTTCATCAACGATACATAAGCAACGGTGAATATCGATATTT CATTCGCATCAATAAAGAAGAAATTCATTCTGTCGTCAATACCCAAGCAA AACAATTTTATAATGTTAAAGTGATTGCTGGTCAAAAATTCACTCGTGCT GAGGTTTGCCCTGCATCAATTAAAAATGTCAAACACACGAACTTTCTGTA AAATAAAAACGTGGATATTACAAAGTGCACGAATTTTTTACTATTTTATT CAGGATGAATCTCTCAGGGTTAGCTTTTTAAGATGGTTTATATGCAGTAA AGATAATAAAATATGAGGATATAGGGGTACCAATGATCTTCAAGTCTCAT GAGAAAGTTTTGTTGGAGCTAAACCTTAGCTCAGGTTAATTCCAAGTCGA ATGAAGTACATCCCGCCACCACATCGAGGTGGCTATGAAATAGTATATTT CGGCTGCCGGTTATTCTTTCCTTCGTCTATATATATTCTACCGTCAAGCC CCTTTTCAGCGCAGTTTATCTCAGTCTCAAATTGATCACAACTTCAATCT TTCATAACACGAACAACGACGAACAACGACCACCATTTTGCCGTTATACG CGTCAACAACACCAGCGTTGAATCCAACGGCTCGCCCAAACTCCATCAAC AGCACCACTTTCTTCAGTAGGCGATGGAACCAATATCCTGGTAACATTAA TCTCCTTAATCAACAGCTGGCTTCGTCCATTCAAATAACGAACGAACGAC AACCTCTTCACCCACTACCGCCTCAAACGCCCTCACATGAGCGATCAACA ACAATAATGGTAGCCTCGCTACGAGTGAAAACGTCCATCAACTCTCATTG CCACGGTTAACCCATTCTGATTGCCACCCCTCCTTTAATTTTCGGTATGA ATCTTTGTATTGTTTTCTTAAAGTCTTTAACGCTGGTAAAGTTATTGAGG CAATCTTATCAGTATTTGTTCCTTTTTTCTCGAATCAGGATAAATTCTGG AATTTTGTTCAAGGCGCATAAAGATTTTCTGCATTCTGAGTGATTTGTGG CTGGAGTGACACTTGTCATCGTTTCTGTAGTTGGGATTGTCGTCGTGCTG CTTCATTAGTCTTTTAAAAGAGATGGGGATAAAGGGCTTCGATAAAAAGG ATCCTAGCTCTTATTTTTTTTATTACCTTTGTATCTCTGTCTTATTATGG TTAGGTCAAGTTAAATTTAGTTTGTGGTTAAGCACTCTGGTTAGAGATCG ATGCGTTTTGTTTCTTTTTGTTTCGAAGAGTTCTAAATGTAGGAATAGAT TAAATTTGCCCATTTGAAATTCGTTGAATATTTTGCATCTGCTTTCTTTT TGAAATGGCAAGTTGTTGTTGTTACTTGAAGAAAAAGTG

Coding sequence (CDS) from alignment at scaffold_355:211443..215531-

>TCONS_00061297 ID=TCONS_00061297|Name=TCONS_00061297|organism=Clytia hemisphaerica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_355:211443..215531- (Clytia hemisphaerica)
GAAACCCAACATTGAACGAGATGAGAATTAATGCACCCGTCAACGGAGAT
AAATCATATCGACAGAACATACCTTTCACCCTAGCAGTCAACGAAACTAT
GGATGTTGAAGTTCATCAACGATACATAAGCAACGGTGAATATCGATATT
TCATTCGCATCAATAAAGAAGAAATTCATTCTGTCGTCAATACCCAAGCA
AAACAATTTTATAATGTTAAAGTGATTGCTGGTCAAAAATTCACTCGTGC
TGAGGTTTGCCCTGCATCAATTAAAAATGTCAAACACACGAACTTTCTGT
AAAAATAGCCTTACCAAAGCACTTCCGACTCGGAGTTATTCCAGTTTTAT
CTCCAGAATGGATTTTCAAATTCTCAATCCGTTTTCACTCGTTGGATTAT
GTCGGGGATGGAACATTCTCTTATTGCACACTTCTTCACCTCACTCAAGG
GGGAAACAATGATGTGTACGGGGATAGAACCCCAAATATTGCGATCGCAG
ATTTTGGGCATTCCAGAAAACAATCATGGACAGGAAGCAGTTACTTTTGT
TGGTGAACAAGAGGATTTCCAGTAAAGATAGCGAGAAATTTCTGCTCGAG
AAATTTATTTCCATATTTTCTAATATGTGGTTTGTTTTCTCTTTGATTTT
TCTTCCTCTATTATTCGTCAAATCAAAGTGTAATGAGGAAACCCAACATT
GAACGAGATGAGAATTAATGCACCCGTCAACGGAGATAAATCATATCGAC
AGAACATACCTTTCACCCTAGCAGTCAACGAAACTATGGATGTTGAAGTT
CATCAACGATACATAAGCAACGGTGAATATCGATATTTCATTCGCATCAA
TAAAGAAGAAATTCATTCTGTCGTCAATACCCAAGCAAAACAATTTTATA
ATGTTAAAGTGATTGCTGGTCAAAAATTCACTCGTGCTGAGGTTTGCCCT
GCATCAATTAAAAATGTCAAACACACGAACTTTCTGTAAAAATAGCCTTA
CCAAAGCACTTCCGACTCGGAGTTATTCCAGTTTTATCTCCAGAATGGAT
TTTCAAATTCTCAATCCGTTTTCACTCGTTGGATTATGTCGGGGATGGAA
CATTCTCTTATTGCACACTTCTTCACCTCACTCAAGGGGGAAACAATGAT
GTGTACGGGGATAGAACCCCAAATATTGCGATCGCAGATTTTGGGCATTC
CAGAAAACAATCATGGACAGGAAGCAGTTACTTTTGTTGGTGAACAAGAG
GATTTCCAGTAAAGATAGCGAGAAATTTCTGCTCGAGAAATTTATTTCCA
TATTTTCTAATATGTGGTTTGTTTTCTCTTTGATTTTTCTTCCTCTATTA
TTCGTCAAATCAAAGTGTAATGAGGAAACCCAACATTGAACGAGATGAGA
ATTAATGCACCCGTCAACGGAGATAAATCATATCGACAGAACATACCTTT
CACCCTAGCAGTCAACGAAACTATGGATGTTGAAGTTCATCAACGATACA
TAAGCAACGGTGAATATCGATATTTCATTCGCATCAATAAAGAAGAAATT
CATTCTGTCGTCAATACCCAAGCAAAACAATTTTATAATGTTAAAGTGAT
TGCTGGTCAAAAATTCACTCGTGCTGAGGTTTGCCCTGCATCAATTAAAA
ATGTCAAACACACGAACTTTCTGTAAAAATAGCCTTACCAAAGCACTTCC
GACTCGGAGTTATTCCAGTTTTATCTCCAGAATGGATTTTCAAATTCTCA
ATCCGTTTTCACTCGTTGGATTATGTCGGGGATGGAACATTCTCTTATTG
CACACTTCTTCACCTCACTCAAGGGGGAAACAATGATGTGTACGGGGATA
GAACCCCAAATATTGCGATCGCAGATTTTGGGCATTCCAGAAAACAATCA
TGGACAGGAAGCAGTTACTTTTGTTGGTGAACAAGAGGATTTCCAGTAAA
GATAGCGAGAAATTTCTGCTCGAGAAATTTATTTCCATATTTTCTAATAT
GTGGTTTGTTTTCTCTTTGATTTTTCTTCCTCTATTATTCGTCAAATCAA
AGTGTAATGAGGAAACCCAACATTGAACGAGATGAGAATTAATGCACCCG
TCAACGGAGATAAATCATATCGACAGAACATACCTTTCACCCTAGCAGTC
AACGAAACTATGGATGTTGAAGTTCATCAACGATACATAAGCAACGGTGA
ATATCGATATTTCATTCGCATCAATAAAGAAGAAATTCATTCTGTCGTCA
ATACCCAAGCAAAACAATTTTATAATGTTAAAGTGATTGCTGGTCAAAAA
TTCACTCGTGCTGAGGTTTGCCCTGCATCAATTAAAAATGTCAAACACAC
GAACTTTCTGTAAAAATAGCCTTACCAAAGCACTTCCGACTCGGAGTTAT
TCCAGTTTTATCTCCAGAATGGATTTTCAAATTCTCAATCCGTTTTCACT
CGTTGGATTATGTCGGGGATGGAACATTCTCTTATTGCACACTTCTTCAC
CTCACTCAAGGGGGAAACAATGATGTGTACGGGGATAGAACCCCAAATAT
TGCGATCGCAGATTTTGGGCATTCCAGAAAACAATCATGGACAGGAAGCA
GTTACTTTTGTTGGTGAACAAGAGGATTTCCAGTAAAGATAGCGAGAAAT
TTCTGCTCGAGAAATTTATTTCCATATTTTCTAATATGTGGTTTGTTTTC
TCTTTGATTTTTCTTCCTCTATTATTCGTCAAATCAAAGTGTAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038460XLOC_038460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061297-exon-scaffold_355-1575043694:215404..215531TCONS_00061297-exon-scaffold_355-1575043694:215404..215531Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1575043694:214633..214693TCONS_00061297-exon-scaffold_355-1575043694:214633..214693Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1575043694:213981..214178TCONS_00061297-exon-scaffold_355-1575043694:213981..214178Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1575043694:211443..212932TCONS_00061297-exon-scaffold_355-1575043694:211443..212932Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1510915933:215404..215531TCONS_00061297-exon-scaffold_355-1510915933:215404..215531Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1510915933:214633..214693TCONS_00061297-exon-scaffold_355-1510915933:214633..214693Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1510915933:213981..214178TCONS_00061297-exon-scaffold_355-1510915933:213981..214178Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1510915933:211443..212932TCONS_00061297-exon-scaffold_355-1510915933:211443..212932Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1491911889:215404..215531TCONS_00061297-exon-scaffold_355-1491911889:215404..215531Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1491911889:214633..214693TCONS_00061297-exon-scaffold_355-1491911889:214633..214693Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1491911889:213981..214178TCONS_00061297-exon-scaffold_355-1491911889:213981..214178Clytia hemisphaericaexon
TCONS_00061297-exon-scaffold_355-1491911889:211443..212932TCONS_00061297-exon-scaffold_355-1491911889:211443..212932Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061297-proteinTCONS_00061297-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:211443..215531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191029 0.36972 0.212332 0.202633 0.609685 0.347232 0.218764 0.463741 0.392361 0.335359 0.0659537 0.244208 0.42985 0.895344 0.209969 0.132625 0.39954 0.232929 0.56635 0.523318 1.94174 1.46761 1.03431 1.88115 3.40526 4.53497 0.148115 0.130606 0.247166 0.180892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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