TCONS_00061287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061287
Unique NameTCONS_00061287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061287 ID=TCONS_00061287|Name=TCONS_00061287|organism=Clytia hemisphaerica|type=transcript|length=1425bp
AAACAAAACACACAGCACTCATCTTGAATGGCAAACATGAATTTTTCGAC
ATTGAGAAATAACAGTTGTATAAACATGATTTTCAcgtgttttatatttt
tacaaatattgAGTCTAGCCTCGTTTCGGAGTCTCCCACCATCGCAAACT
CCTGAAATGATTTTAAATGaaaaagatcTTTTCGAAGGGGACATTATACT
GACACCAGAACAAAAAGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTCC
ATGGCAACAAGGGATTTAACAATGATCAAACCGCAAAACTGGGCCTACAA
GCGTGGCCTTCAGCTTATGTCCCTTATCGGCTGTCTCCAGCAATAGGGAA
TTCAACTGAGGCAGTGAAAGCCATCGAAGAGGCAGCAAAATATTTGAGTA
AATGGACATGCGTTAATTTGTATCAATTATCTCCTCGAAAAAATAAAGAC
TATATTTACTTCGAAACATCAAGCGTATGTGCGGCACCATTGGGTTATAC
GAAAGGCAAGAAGCGACAATCCATTGGTCTTTCACCTAAATGTTATTTTT
ATACTTATGTGATGCATTTGGTCATTCACGCTTTGGGGTATTTTCACGAG
CACACAAGACCCGACCGCGACAATTACGTCATAACAGACTACACAAGAAC
TCTTTGGCCTGATGTTTATAAAGTGTATTTCGAGAAATTTGAGCCTTGGA
TGACTGATGACACTTACAATAAAACGAATGCTGATTATGATTTCCTCAGT
ATTATGCATCCGCCCGTTGACTGGTTCACCATTGGTCCAGACACCATACA
AACGCCCGTTTACTCCGCCCTTACGAATACAAAAAAAGgaaaaaatggAT
TTACGCCATTCTTCTGGTCAATAAAACCTCGATCGCAATATTCAGCATAC
ACGTATGAAATGGGACAAAGATACACGCTTTCATACTGGGACCAACGTAA
AATCGGTTTTGCTTATCACTGTCCTTATGACATGCATGGTGAATTTGTCA
ACTTTCCCGTCGTTTTCCCGAAGAACTACAAGCCAGATACAAGTTGTTAC
GATTTGACTGGATTATGTTTTGAATGGAAAGTGAGATACAACCGCTGCAA
CAAAATGCATGAAGGTACATTAGAAGCACGGCAAACCAGACAATGGTGTC
GGCGAACGTGTGGCTTGTGTACAAGAACCGTTGTAACTTAACAAATGAAT
TATAAATTAGTTGCGTTGTGGagatggtgcatatcatgaatacgccGTAA
ATATTTGTCATTTGTAAATACCTCTTATGTGTGCACTAGTTATTCCTTTT
CTTCCTGGCTGGCCATTTCTCATTAAAATTGAAACAGTGTAATTGATCTA
AGGGAACAATATTCGgattaaattaaataaataaaagacgCCTTAAAGAA
AAACTTGTTTCCAGTACTAAaggat
Run BLAST on NCBI

protein sequence of TCONS_00061287-protein

>TCONS_00061287-protein ID=TCONS_00061287-protein|Name=TCONS_00061287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MANMNFSTLRNNSCINMIFTCFIFLQILSLASFRSLPPSQTPEMILNEKD
LFEGDIILTPEQKEGLRKARLLKLHGNKGFNNDQTAKLGLQAWPSAYVPY
RLSPAIGNSTEAVKAIEEAAKYLSKWTCVNLYQLSPRKNKDYIYFETSSV
CAAPLGYTKGKKRQSIGLSPKCYFYTYVMHLVIHALGYFHEHTRPDRDNY
VITDYTRTLWPDVYKVYFEKFEPWMTDDTYNKTNADYDFLSIMHPPVDWF
TIGPDTIQTPVYSALTNTKKGKNGFTPFFWSIKPRSQYSAYTYEMGQRYT
LSYWDQRKIGFAYHCPYDMHGEFVNFPVVFPKNYKPDTSCYDLTGLCFEW
KVRYNRCNKMHEGTLEARQTRQWCRRTCGLCTRTVVT
Run BLAST on NCBI

transcript from alignment at scaffold_355:234738..241530+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061287 ID=TCONS_00061287|Name=TCONS_00061287|organism=Clytia hemisphaerica|type=transcript|length=6793bp|location=Sequence derived from alignment at scaffold_355:234738..241530+ (Clytia hemisphaerica)
AAACAAAACACACAGCACTCATCTTGAATGGCAAACATGAATTTTTCGAC
ATTGAGAAATAACAGTTGTATAAACATGATTTTCAcgtgttttatatttt
tacaaatattgAGTCTAGCCTCGTTTCGGAGTCTCCCACCATCGCAAACT
CCTGAAATGATTTTAAATGGTAAGTAATTATTAAgggtttcaatattttt
cttttttgacattttagtttTATCCATCTTGATATAGCTGCTAGCACCTC
ACTGATTCGTTGTGTTAATTGAGTTTAAagcacagatttataaagcccaa
agggctagaaatCGTGTTTTAAGCCAtcgcaagcaaaaaaagtgaatagt
GTGAGAAATATAGTTgcaattgtttttaaaaatctgcgagacttctgatt
gatcaagcgctaaaattatattgtaatgtcacgtgacctagataggattt
cctacctagaTACCGCacatttttcagccaaagcacgatatctagccctt
cgggctttataaatatgTGGTTTAAAGCTCCGAAGGGACTAGAGATGAAT
CTTTAACTTGACAATGACGGGATAAATCTAGTTCGCGGGTCATGCGTTTT
GGACGGGAAAAAGTGGCTTTATTTGTCATCCAGGATTTTGGGGGCTTTGA
AGTCAATGGTTGTGTTATAAGTAGCCCAGGGTCCACTTCatgctttttga
tagactggatggcgcgaccAAGTGGCCTGGTAGTAAATGGTAATTCTCta
atttttagttttacatGATAATTGGTTTGGACGagataatgtttttattt
gaaaatagggTAGTGCAAATCTAGTTTTTGCCCTACTTCGAAGTTACTTT
TAAATAGATTTTGTTTGTTAGTCCGTTCGACCGTTTTCTTTTCTTGGGAT
CGGCCAGCATTactttatttctgattttttttgcattttttgtctGCATT
TTCTTACTATTCTCGTCATTTCCTATTTTCTTACACATAagtcttcaggt
aggtccattcagcatgtagcttgtttgcttggtttctcattttttcagcT
CTACAAGATACCAGGCATTTGAGTTTAAAAAAAACGCCCTCCAACGCCCT
TAACGCCTATATAGTATCTNGCATTTTTTGTCTGCATTTTCTTACTAGTT
CTCGTCATTTCCTATTTTCTTATACATAAGTCTTctggtaggtccattca
gcatgtagcttgtttgcttggtttctcattttttcagcTCTACAAGATAC
CAGGCATTTGAGTTAAAATAACGCCCTCCAACGCCCTTAACGCCTATATc
gtattgtttttatttttcagaaaaagatcTTTTCGAAGGGGACATTATAC
TGACACCAGAACAAAAAGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTC
CATGGCAACAAGGGATTTAACAATGATCAAACCGCAAAACTGGGCCTACA
AGCGTGGCCTTCAGCTTATGTCCCTTATCGGCTGTCTCCAGCAATAGGTA
TAGTTTTATTTCCCATTATATTTACTGAGTCATGGAGGAAAAATTCATAT
TACGAGCAtaaatttgactgaaatttctttttcaagattCTACTGCACCA
CCAATGAGACCTATAAGTTTAGAAATGTTAATTTGCACTGAAAATTATTC
TCCCTCGATTAGACATTAGCGGACAAATTTCTTAACCAGAGGATCATCTT
TAGCCAAGATGTTTAGATctggtttagacggcccacctattctaattgtg
GATCGAAATTGGCAGAAATTTGACTGTCAGATCCATGCATTGCTTTCTTT
TGATGTCAATGCAATGAATTTCAATACAATTTTCAAGCTAAGATTTCAAC
TGCCAACTTACTGCCCATTCTAAATCATTAGAAAAGGTAGGGCATAAAGT
AGGCCGTTTAAACTAGAGCTTACTTATTTCCGATTTTTTATTGTGGCTTG
GATCATCATAAGATTTGCGTTTTAGGTACGTTGCGAGAGATTCTTCAGGA
CTATTAAGTCCTCCGTcgtcaaaaaaaacaaacacgTAAACTCGCTGTTG
GCTCGGTTCCCGGTTACCACATAATGGAGTCCTTGGAAACAAAactgtat
tttttctttttctacaaTAGGGAATTCAACTGAGGCAGTGAAAGCCATCG
AAGAGGCAGCAAAATATTTGAGTAAATGGACATGCGTTAATTTGTATCAA
TTATCTCCTCGAAAAAATAAAGACTATATTTACTTCGAAACATCAAGGTA
TGTCtacacccagctggcacacaacattgttacaacgttcatctaatgtt
atatgaatattagatgaacgttgaaacgacgttgtgtgccagctgggcag
tCTTTTTCTATTTAAGGATAATGTCCGATGGTTTGAAATCTCTCGCCTGA
AATCTCTCGCCTTTCACACACCTGCACAAAATGACTTAGTCTTTTCCAGG
GACGATATAAGACCCGGGGGATACTAGGCTTTGCGAGATGTCTGAGCCAA
CGTTCAAAAATCTTCCTTTAGAGAGACTATTTccacaaaatttcagccaa
aattttcaaatttactcCATATTTCAAGAGTTTAGGATCCTTTGAGAGag
tcgatttttgattttcgtaattttggaaccctttaAGAGACTCAATTACT
TTTTAATGATccttgtacccctttgagggactcTCGAGGGTGTGAAAAGG
CGGGACTTATGGTTCGTTCATACctggcacccattttgcctaagtacccc
ctcccccacATACACACCCGGTTGATATGGtatatatttgaaatctctTA
AAAGTTACTTATGCGTCAAAGTTCTATTTTTTTCCTGTTAATTTATACTt
gaatatctcgactttggaaaatagttgaACAATAACATGTGAGATTTTGC
TTTGAATGCACGTCTTGAATGTAGTGAAAGCACCCTAAATCTCTAGATTT
ATATATTTGAAAACGGCAATATGTTGTACcctaagttggtctaatatcga
catccctcgtctaattccaacagccttctttagagaaagaaataatatga
aagcttgaatcactgattgaaaaaggttctgaccactaagcaaagaaaaa
cagtttcaacctttctatcaatttcaacTCTAAAAAGGGTGTTTGAATTG
GATGAGTatgttgatattagaccaagttacggtagctttttcattttgta
aGCAGATAacgtttagattttttttttgctcttttcAGCGTATGTGCGGC
ACCATTGGGTTATACGAAAGGCAAGAAGCGACAATCCATTGGTCTTTCAC
CTAAATGTTATTTTTATACTTATGTGATGCATTTGGTCATTCACGCTTTG
GGTGAGTACCCAGCCGGCACTTGACGTCGCatcaacgtccatttgacatt
cataacgtccaaataacgttatttgaacgttaaaacaacgttgtgtgtca
gctgttATTGGGTGGTCCTTTGTCACATTTGTAACGACTGATCGCGCGGT
TTTAATGGCGTCCTCTCCTTATTTTTACGGTGGcccattgttatttttat
tatgGTCTCGTTATATCTATGGTGGCCCTCATTTACTATTATGATGGCTC
CCTTGCGTTATTTCTACGTTGGCTCCTTGTCATTATCATAGCGGTCCTTC
ATTTCTTTTATGGTGGCTTCTTACTTTTATGGTGGCTTTTTCTTATCCTT
GTTGTTTTCATCGTACCTACCTTCTCACTTTACGAATGGTCTTTCTTAGT
TGTAATATTATATACTGAACTTAAGTATAAAAGGTGATGCTTGAATAGGG
CATAGGGCATTATTCTTCTTTTCgtaggggggggggtggggAAGTTGATT
AAAAAACGACCGTTCGTGCAGCCGCACGGTAAGGTCTTTTACCTTGAATT
CTTTAATGGTATTATGTGTATGAATttctctaaaataaaaaaaacttcgc
ATTTTAGGGTATTTTCACGAGCACACAAGACCCGACCGCGACAATTACGT
CATAACAGACTACACAAGAACTCTTTGGCGTAAGTATGAAGATTTAGTTC
CTTAACCTGACCAACTTGTTTCAAAGGAATGCAAATTGTTAAACTGATTG
GTCATTGGAACTAATTCTAAAGAATCCGTAAAGAACTTTGAGAAAACAGA
GtcaatttctgcaaaaaatTATGTCTGAGAAAATGAAGGTAACGTTACAa
tcttaaaatctaaaaattgaaGATGGCTAATTTTTGCTAAGTTACAAACT
CAAACTCGTCAATAGAATCATTGAAAtacgttttgtttttaaaataatta
tcagaattaaaaaaaagtgaattaaggGTCTGGGTTCAAGTTCGACATAA
GACATAGGTGACtttagaccatgtcgaacttattagagaaaaataagatt
tgtcgtTGTCATTTTATTgccttttaacgagcgttgcactccttcgcatg
ttacCAGGGTATACTCTATTGTTTTAAATTCACCAGTGTAAAACCTTTCT
ACTCATCCCTCCATTCCACAGCTGATGTTTATAAAGTGTATTTCGAGAAA
TTTGAGCCTTGGATGACTGATGACACTTACAATAAAACGAATGCTGATTA
TGATTTCCTCAGTATTATGCATCCGCCCGTTGACTGGTTCACCATTGGTC
CAGACACCATACAAACGCCCGTTTACTCCGCCCTTACGAATACAAAAAAA
GGTAAAGACAATATCTAACGCGCCAACTTGATAAGCTGATTCAGTTTTTA
CGTATTGAATCTaacgattttcttttttcttgaggTGTATTTCTATTTCC
TGTGCAGTGATCTCTGAGTTAGTTTAGGGCCTATTTCCAATTGGGAAGGA
GTGTGTCTTGTTTTGTCTTATATCTCAATCTCAGTTTTGTCTTAAATTAA
TGAATTCGGTAAtaagtttgatttaaaattttcatccagtaaTTGTCAGA
GAATCACATTTAGATTCAACTCTTTAACTCCTTTCGGGATCAATATTCTG
CTTTAAATTGTACAGAAAAAAAACGATTTTCCGATGTTTTTGGTCCATAA
AACCTAAACGAAACtcaaagcaaaatattttaccttgtttcttttaaagg
aaaaatgaTCTTTCCAAAACGCCATATTTTTGGTCCATAATACCCAAACG
AAACCCAAAGCAAATTATTTTACCTCGTTttttcacaggaaaaaatggAT
TTACGCCATTCTTCTGGTCAATAAAACCTCGATCGCAATATTCAGCATAC
ACGTATGAAATGGGACAAAGATACACGCTTTCATACTGGGACCAACGTAA
AATCGGTTTTGCTTATCACTGTCCTTATGACATGCATGGTGAATTTGTCA
ACTGTAAGTATATGGAGAAAATTGAGTTTAAATCCTTCTTATAACTTTCT
CAAGCCTTAAGATTCACAACGCATTTataatgacggattgaatcctTGGA
ATATTAGTCTGAATAACAGACATCCAAAATAGGTAGCATGGATGCTATTA
GCCTAAGAGGAAATCATTCAAATATCTTAACCCAAactttcgccaaaatt
gaaatatcttccAGATAAAGGTTTTTGAATTCCAACGCCTATGCTAAAAA
ATCAACGCTAATTATATTTGAGACTTTCAATAAATTGATCgtcctaattt
cttttttctttgtttaccaGTTCCCGTCGTTTTCCCGAAGAACTACAAGC
CAGATACAAGTAAGTAACTTATTCGTGATACGCCTACAATCTCGGGTCAA
AATATACtgggaattttggttaattccacgttttcagcaatttaaagttc
gggcaaattgataaatctattcgaatatttcaattcgggaggggtttata
gacttccagggcTATACTCTGAaccttattggaccattcttggactttag
cgttaaaactcagagttaaaactctacccgtccaatataatttagagcgc
ttccaaatcgtttgcggttgtaagatttcgtgggaacttcccttttttct
caaataatatgactttgattgtagtCATTTTCTAacgaaaacacccgaaa
aagGTTTGACTTTGATCCCGCTCTGTTACAGAAACATGCTGgtcaaaatc
cggcttttttcGGGCGCTGATGTTATCTTGACTTACGCACAcctttggaa
agatatttctaaGGAGAATAATTAAGGTTGACaaagtaaaagttttttga
aaaattgaacaatgAAGGTAGAAAAATGGAGAAcgagatttttgattttt
taaaaccTTGCTGAATTTTCATTCAGCTGTGAATTAATATTTACTCGTAG
TCCGCAGCGAACGTTTTAACGAGGGAGGCCTTGTGAAAATTCCTGATGGA
CTCCTATGGGTGTTTTTCATCATTAGGCATGACTTAATagaattttgatt
taattttcagGTTGTTACGATTTGACTGGATTATGTTTTGAATGGAAAGT
GAGATACAACCGCTGCAACAAAATGCATGAAGGTACATTAGAAGCACGGC
AAACCAGACAATGGTGTCGGCGAACGTGTGGCTTGTGTACAAGAACCGTT
GTAACTTAACAAATGAATTATAAATTAGTTGCGTTGTGGagatggtgcat
atcatgaatacgccGTAAATATTTGTCATTTGTAAATACCTCTTATGTGT
GCACTAGTTATTCCTTTTCTTCCTGGCTGGCCATTTCTCATTAAAATTGA
AACAGTGTAATTGATCTAAGGGAACAATATTCGgattaaattaaataaat
aaaagacgCCTTAAAGAAAAACTTGTTTCCAGTACTAAaggat

Coding sequence (CDS) from alignment at scaffold_355:234738..241530+

>TCONS_00061287 ID=TCONS_00061287|Name=TCONS_00061287|organism=Clytia hemisphaerica|type=CDS|length=10476bp|location=Sequence derived from alignment at scaffold_355:234738..241530+ (Clytia hemisphaerica)
ATGGCAAACATGAATTTTTCGACATTGAGAAATAACAGTTGTATAAACAT
GATTTTCAcgtgttttatatttttacaaatattgAGTCTAGCCTCGTTTC
GGAGTCTCCCACCATCGCAAACTCCTGAAATGATTTTAAATGaaaaagat
cTTTTCGAAGGGGACATTATACTGACACCAGAACAAAAAGAAGGATTACG
TAAAGCGCGTCTGTTGAAGCTCCATGGCAACAAGGGATTTAACAATGATC
AAACCGCAAAACTGGGCCTACAAGCGTGGCCTTCAGCTTATGTCCCTTAT
CGGCTGTCTCCAGCAATAGGGAATTCAACTGAGGCAGTGAAAGCCATCGA
AGAGGCAGCAAAATATTTGAGTAAATGGACATGCGTTAATTTGTATCAAT
TATCTCCTCGAAAAAATAAAGACTATATTTACTTCGAAACATCAAGCGTA
TGTGCGGCACCATTGGGTTATACGAAAGGCAAGAAGCGACAATCCATTGG
TCTTTCACCTAAATGTTATTTTTATACTTATGTGATGCATTTGGTCATTC
ACGCTTTGGGGTATTTTCACGAGCACACAAGACCCGACCGCGACAATTAC
GTCATAACAGACTACACAAGAACTCTTTGGCCTGATGTTTATAAAGTGTA
TTTCGAGAAATTTGAGCCTTGGATGACTGATGACACTTACAATAAAACGA
ATGCTGATTATGATTTCCTCAGTATTATGCATCCGCCCGTTGACTGGTTC
ACCATTGGTCCAGACACCATACAAACGCCCGTTTACTCCGCCCTTACGAA
TACAAAAAAAGgaaaaaatggATTTACGCCATTCTTCTGGTCAATAAAAC
CTCGATCGCAATATTCAGCATACACGTATGAAATGGGACAAAGATACACG
CTTTCATACTGGGACCAACGTAAAATCGGTTTTGCTTATCACTGTCCTTA
TGACATGCATGGTGAATTTGTCAACTTTCCCGTCGTTTTCCCGAAGAACT
ACAAGCCAGATACAAGTTGTTACGATTTGACTGGATTATGTTTTGAATGG
AAAGTGAGATACAACCGCTGCAACAAAATGCATGAAGGTACATTAGAAGC
ACGGCAAACCAGACAATGGTGTCGGCGAACGTGTGGCTTGTGTACAAGAA
CCGTTGTAACTTAAATGGCAAACATGAATTTTTCGACATTGAGAAATAAC
AGTTGTATAAACATGATTTTCAcgtgttttatatttttacaaatattgAG
TCTAGCCTCGTTTCGGAGTCTCCCACCATCGCAAACTCCTGAAATGATTT
TAAATGaaaaagatcTTTTCGAAGGGGACATTATACTGACACCAGAACAA
AAAGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTCCATGGCAACAAGGG
ATTTAACAATGATCAAACCGCAAAACTGGGCCTACAAGCGTGGCCTTCAG
CTTATGTCCCTTATCGGCTGTCTCCAGCAATAGGGAATTCAACTGAGGCA
GTGAAAGCCATCGAAGAGGCAGCAAAATATTTGAGTAAATGGACATGCGT
TAATTTGTATCAATTATCTCCTCGAAAAAATAAAGACTATATTTACTTCG
AAACATCAAGCGTATGTGCGGCACCATTGGGTTATACGAAAGGCAAGAAG
CGACAATCCATTGGTCTTTCACCTAAATGTTATTTTTATACTTATGTGAT
GCATTTGGTCATTCACGCTTTGGGGTATTTTCACGAGCACACAAGACCCG
ACCGCGACAATTACGTCATAACAGACTACACAAGAACTCTTTGGCCTGAT
GTTTATAAAGTGTATTTCGAGAAATTTGAGCCTTGGATGACTGATGACAC
TTACAATAAAACGAATGCTGATTATGATTTCCTCAGTATTATGCATCCGC
CCGTTGACTGGTTCACCATTGGTCCAGACACCATACAAACGCCCGTTTAC
TCCGCCCTTACGAATACAAAAAAAGgaaaaaatggATTTACGCCATTCTT
CTGGTCAATAAAACCTCGATCGCAATATTCAGCATACACGTATGAAATGG
GACAAAGATACACGCTTTCATACTGGGACCAACGTAAAATCGGTTTTGCT
TATCACTGTCCTTATGACATGCATGGTGAATTTGTCAACTTTCCCGTCGT
TTTCCCGAAGAACTACAAGCCAGATACAAGTTGTTACGATTTGACTGGAT
TATGTTTTGAATGGAAAGTGAGATACAACCGCTGCAACAAAATGCATGAA
GGTACATTAGAAGCACGGCAAACCAGACAATGGTGTCGGCGAACGTGTGG
CTTGTGTACAAGAACCGTTGTAACTTAAATGGCAAACATGAATTTTTCGA
CATTGAGAAATAACAGTTGTATAAACATGATTTTCAcgtgttttatattt
ttacaaatattgAGTCTAGCCTCGTTTCGGAGTCTCCCACCATCGCAAAC
TCCTGAAATGATTTTAAATGaaaaagatcTTTTCGAAGGGGACATTATAC
TGACACCAGAACAAAAAGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTC
CATGGCAACAAGGGATTTAACAATGATCAAACCGCAAAACTGGGCCTACA
AGCGTGGCCTTCAGCTTATGTCCCTTATCGGCTGTCTCCAGCAATAGGGA
ATTCAACTGAGGCAGTGAAAGCCATCGAAGAGGCAGCAAAATATTTGAGT
AAATGGACATGCGTTAATTTGTATCAATTATCTCCTCGAAAAAATAAAGA
CTATATTTACTTCGAAACATCAAGCGTATGTGCGGCACCATTGGGTTATA
CGAAAGGCAAGAAGCGACAATCCATTGGTCTTTCACCTAAATGTTATTTT
TATACTTATGTGATGCATTTGGTCATTCACGCTTTGGGGTATTTTCACGA
GCACACAAGACCCGACCGCGACAATTACGTCATAACAGACTACACAAGAA
CTCTTTGGCCTGATGTTTATAAAGTGTATTTCGAGAAATTTGAGCCTTGG
ATGACTGATGACACTTACAATAAAACGAATGCTGATTATGATTTCCTCAG
TATTATGCATCCGCCCGTTGACTGGTTCACCATTGGTCCAGACACCATAC
AAACGCCCGTTTACTCCGCCCTTACGAATACAAAAAAAGgaaaaaatggA
TTTACGCCATTCTTCTGGTCAATAAAACCTCGATCGCAATATTCAGCATA
CACGTATGAAATGGGACAAAGATACACGCTTTCATACTGGGACCAACGTA
AAATCGGTTTTGCTTATCACTGTCCTTATGACATGCATGGTGAATTTGTC
AACTTTCCCGTCGTTTTCCCGAAGAACTACAAGCCAGATACAAGTTGTTA
CGATTTGACTGGATTATGTTTTGAATGGAAAGTGAGATACAACCGCTGCA
ACAAAATGCATGAAGGTACATTAGAAGCACGGCAAACCAGACAATGGTGT
CGGCGAACGTGTGGCTTGTGTACAAGAACCGTTGTAACTTAAATGGCAAA
CATGAATTTTTCGACATTGAGAAATAACAGTTGTATAAACATGATTTTCA
cgtgttttatatttttacaaatattgAGTCTAGCCTCGTTTCGGAGTCTC
CCACCATCGCAAACTCCTGAAATGATTTTAAATGaaaaagatcTTTTCGA
AGGGGACATTATACTGACACCAGAACAAAAAGAAGGATTACGTAAAGCGC
GTCTGTTGAAGCTCCATGGCAACAAGGGATTTAACAATGATCAAACCGCA
AAACTGGGCCTACAAGCGTGGCCTTCAGCTTATGTCCCTTATCGGCTGTC
TCCAGCAATAGGGAATTCAACTGAGGCAGTGAAAGCCATCGAAGAGGCAG
CAAAATATTTGAGTAAATGGACATGCGTTAATTTGTATCAATTATCTCCT
CGAAAAAATAAAGACTATATTTACTTCGAAACATCAAGCGTATGTGCGGC
ACCATTGGGTTATACGAAAGGCAAGAAGCGACAATCCATTGGTCTTTCAC
CTAAATGTTATTTTTATACTTATGTGATGCATTTGGTCATTCACGCTTTG
GGGTATTTTCACGAGCACACAAGACCCGACCGCGACAATTACGTCATAAC
AGACTACACAAGAACTCTTTGGCCTGATGTTTATAAAGTGTATTTCGAGA
AATTTGAGCCTTGGATGACTGATGACACTTACAATAAAACGAATGCTGAT
TATGATTTCCTCAGTATTATGCATCCGCCCGTTGACTGGTTCACCATTGG
TCCAGACACCATACAAACGCCCGTTTACTCCGCCCTTACGAATACAAAAA
AAGgaaaaaatggATTTACGCCATTCTTCTGGTCAATAAAACCTCGATCG
CAATATTCAGCATACACGTATGAAATGGGACAAAGATACACGCTTTCATA
CTGGGACCAACGTAAAATCGGTTTTGCTTATCACTGTCCTTATGACATGC
ATGGTGAATTTGTCAACTTTCCCGTCGTTTTCCCGAAGAACTACAAGCCA
GATACAAGTTGTTACGATTTGACTGGATTATGTTTTGAATGGAAAGTGAG
ATACAACCGCTGCAACAAAATGCATGAAGGTACATTAGAAGCACGGCAAA
CCAGACAATGGTGTCGGCGAACGTGTGGCTTGTGTACAAGAACCGTTGTA
ACTTAAATGGCAAACATGAATTTTTCGACATTGAGAAATAACAGTTGTAT
AAACATGATTTTCAcgtgttttatatttttacaaatattgAGTCTAGCCT
CGTTTCGGAGTCTCCCACCATCGCAAACTCCTGAAATGATTTTAAATGaa
aaagatcTTTTCGAAGGGGACATTATACTGACACCAGAACAAAAAGAAGG
ATTACGTAAAGCGCGTCTGTTGAAGCTCCATGGCAACAAGGGATTTAACA
ATGATCAAACCGCAAAACTGGGCCTACAAGCGTGGCCTTCAGCTTATGTC
CCTTATCGGCTGTCTCCAGCAATAGGGAATTCAACTGAGGCAGTGAAAGC
CATCGAAGAGGCAGCAAAATATTTGAGTAAATGGACATGCGTTAATTTGT
ATCAATTATCTCCTCGAAAAAATAAAGACTATATTTACTTCGAAACATCA
AGCGTATGTGCGGCACCATTGGGTTATACGAAAGGCAAGAAGCGACAATC
CATTGGTCTTTCACCTAAATGTTATTTTTATACTTATGTGATGCATTTGG
TCATTCACGCTTTGGGGTATTTTCACGAGCACACAAGACCCGACCGCGAC
AATTACGTCATAACAGACTACACAAGAACTCTTTGGCCTGATGTTTATAA
AGTGTATTTCGAGAAATTTGAGCCTTGGATGACTGATGACACTTACAATA
AAACGAATGCTGATTATGATTTCCTCAGTATTATGCATCCGCCCGTTGAC
TGGTTCACCATTGGTCCAGACACCATACAAACGCCCGTTTACTCCGCCCT
TACGAATACAAAAAAAGgaaaaaatggATTTACGCCATTCTTCTGGTCAA
TAAAACCTCGATCGCAATATTCAGCATACACGTATGAAATGGGACAAAGA
TACACGCTTTCATACTGGGACCAACGTAAAATCGGTTTTGCTTATCACTG
TCCTTATGACATGCATGGTGAATTTGTCAACTTTCCCGTCGTTTTCCCGA
AGAACTACAAGCCAGATACAAGTTGTTACGATTTGACTGGATTATGTTTT
GAATGGAAAGTGAGATACAACCGCTGCAACAAAATGCATGAAGGTACATT
AGAAGCACGGCAAACCAGACAATGGTGTCGGCGAACGTGTGGCTTGTGTA
CAAGAACCGTTGTAACTTAAATGGCAAACATGAATTTTTCGACATTGAGA
AATAACAGTTGTATAAACATGATTTTCAcgtgttttatatttttacaaat
attgAGTCTAGCCTCGTTTCGGAGTCTCCCACCATCGCAAACTCCTGAAA
TGATTTTAAATGaaaaagatcTTTTCGAAGGGGACATTATACTGACACCA
GAACAAAAAGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTCCATGGCAA
CAAGGGATTTAACAATGATCAAACCGCAAAACTGGGCCTACAAGCGTGGC
CTTCAGCTTATGTCCCTTATCGGCTGTCTCCAGCAATAGGGAATTCAACT
GAGGCAGTGAAAGCCATCGAAGAGGCAGCAAAATATTTGAGTAAATGGAC
ATGCGTTAATTTGTATCAATTATCTCCTCGAAAAAATAAAGACTATATTT
ACTTCGAAACATCAAGCGTATGTGCGGCACCATTGGGTTATACGAAAGGC
AAGAAGCGACAATCCATTGGTCTTTCACCTAAATGTTATTTTTATACTTA
TGTGATGCATTTGGTCATTCACGCTTTGGGGTATTTTCACGAGCACACAA
GACCCGACCGCGACAATTACGTCATAACAGACTACACAAGAACTCTTTGG
CCTGATGTTTATAAAGTGTATTTCGAGAAATTTGAGCCTTGGATGACTGA
TGACACTTACAATAAAACGAATGCTGATTATGATTTCCTCAGTATTATGC
ATCCGCCCGTTGACTGGTTCACCATTGGTCCAGACACCATACAAACGCCC
GTTTACTCCGCCCTTACGAATACAAAAAAAGgaaaaaatggATTTACGCC
ATTCTTCTGGTCAATAAAACCTCGATCGCAATATTCAGCATACACGTATG
AAATGGGACAAAGATACACGCTTTCATACTGGGACCAACGTAAAATCGGT
TTTGCTTATCACTGTCCTTATGACATGCATGGTGAATTTGTCAACTTTCC
CGTCGTTTTCCCGAAGAACTACAAGCCAGATACAAGTTGTTACGATTTGA
CTGGATTATGTTTTGAATGGAAAGTGAGATACAACCGCTGCAACAAAATG
CATGAAGGTACATTAGAAGCACGGCAAACCAGACAATGGTGTCGGCGAAC
GTGTGGCTTGTGTACAAGAACCGTTGTAACTTAAATGGCAAACATGAATT
TTTCGACATTGAGAAATAACAGTTGTATAAACATGATTTTCAcgtgtttt
atatttttacaaatattgAGTCTAGCCTCGTTTCGGAGTCTCCCACCATC
GCAAACTCCTGAAATGATTTTAAATGaaaaagatcTTTTCGAAGGGGACA
TTATACTGACACCAGAACAAAAAGAAGGATTACGTAAAGCGCGTCTGTTG
AAGCTCCATGGCAACAAGGGATTTAACAATGATCAAACCGCAAAACTGGG
CCTACAAGCGTGGCCTTCAGCTTATGTCCCTTATCGGCTGTCTCCAGCAA
TAGGGAATTCAACTGAGGCAGTGAAAGCCATCGAAGAGGCAGCAAAATAT
TTGAGTAAATGGACATGCGTTAATTTGTATCAATTATCTCCTCGAAAAAA
TAAAGACTATATTTACTTCGAAACATCAAGCGTATGTGCGGCACCATTGG
GTTATACGAAAGGCAAGAAGCGACAATCCATTGGTCTTTCACCTAAATGT
TATTTTTATACTTATGTGATGCATTTGGTCATTCACGCTTTGGGGTATTT
TCACGAGCACACAAGACCCGACCGCGACAATTACGTCATAACAGACTACA
CAAGAACTCTTTGGCCTGATGTTTATAAAGTGTATTTCGAGAAATTTGAG
CCTTGGATGACTGATGACACTTACAATAAAACGAATGCTGATTATGATTT
CCTCAGTATTATGCATCCGCCCGTTGACTGGTTCACCATTGGTCCAGACA
CCATACAAACGCCCGTTTACTCCGCCCTTACGAATACAAAAAAAGgaaaa
aatggATTTACGCCATTCTTCTGGTCAATAAAACCTCGATCGCAATATTC
AGCATACACGTATGAAATGGGACAAAGATACACGCTTTCATACTGGGACC
AACGTAAAATCGGTTTTGCTTATCACTGTCCTTATGACATGCATGGTGAA
TTTGTCAACTTTCCCGTCGTTTTCCCGAAGAACTACAAGCCAGATACAAG
TTGTTACGATTTGACTGGATTATGTTTTGAATGGAAAGTGAGATACAACC
GCTGCAACAAAATGCATGAAGGTACATTAGAAGCACGGCAAACCAGACAA
TGGTGTCGGCGAACGTGTGGCTTGTGTACAAGAACCGTTGTAACTTAAAT
GGCAAACATGAATTTTTCGACATTGAGAAATAACAGTTGTATAAACATGA
TTTTCAcgtgttttatatttttacaaatattgAGTCTAGCCTCGTTTCGG
AGTCTCCCACCATCGCAAACTCCTGAAATGATTTTAAATGaaaaagatcT
TTTCGAAGGGGACATTATACTGACACCAGAACAAAAAGAAGGATTACGTA
AAGCGCGTCTGTTGAAGCTCCATGGCAACAAGGGATTTAACAATGATCAA
ACCGCAAAACTGGGCCTACAAGCGTGGCCTTCAGCTTATGTCCCTTATCG
GCTGTCTCCAGCAATAGGGAATTCAACTGAGGCAGTGAAAGCCATCGAAG
AGGCAGCAAAATATTTGAGTAAATGGACATGCGTTAATTTGTATCAATTA
TCTCCTCGAAAAAATAAAGACTATATTTACTTCGAAACATCAAGCGTATG
TGCGGCACCATTGGGTTATACGAAAGGCAAGAAGCGACAATCCATTGGTC
TTTCACCTAAATGTTATTTTTATACTTATGTGATGCATTTGGTCATTCAC
GCTTTGGGGTATTTTCACGAGCACACAAGACCCGACCGCGACAATTACGT
CATAACAGACTACACAAGAACTCTTTGGCCTGATGTTTATAAAGTGTATT
TCGAGAAATTTGAGCCTTGGATGACTGATGACACTTACAATAAAACGAAT
GCTGATTATGATTTCCTCAGTATTATGCATCCGCCCGTTGACTGGTTCAC
CATTGGTCCAGACACCATACAAACGCCCGTTTACTCCGCCCTTACGAATA
CAAAAAAAGgaaaaaatggATTTACGCCATTCTTCTGGTCAATAAAACCT
CGATCGCAATATTCAGCATACACGTATGAAATGGGACAAAGATACACGCT
TTCATACTGGGACCAACGTAAAATCGGTTTTGCTTATCACTGTCCTTATG
ACATGCATGGTGAATTTGTCAACTTTCCCGTCGTTTTCCCGAAGAACTAC
AAGCCAGATACAAGTTGTTACGATTTGACTGGATTATGTTTTGAATGGAA
AGTGAGATACAACCGCTGCAACAAAATGCATGAAGGTACATTAGAAGCAC
GGCAAACCAGACAATGGTGTCGGCGAACGTGTGGCTTGTGTACAAGAACC
GTTGTAACTTAAATGGCAAACATGAATTTTTCGACATTGAGAAATAACAG
TTGTATAAACATGATTTTCAcgtgttttatatttttacaaatattgAGTC
TAGCCTCGTTTCGGAGTCTCCCACCATCGCAAACTCCTGAAATGATTTTA
AATGaaaaagatcTTTTCGAAGGGGACATTATACTGACACCAGAACAAAA
AGAAGGATTACGTAAAGCGCGTCTGTTGAAGCTCCATGGCAACAAGGGAT
TTAACAATGATCAAACCGCAAAACTGGGCCTACAAGCGTGGCCTTCAGCT
TATGTCCCTTATCGGCTGTCTCCAGCAATAGGGAATTCAACTGAGGCAGT
GAAAGCCATCGAAGAGGCAGCAAAATATTTGAGTAAATGGACATGCGTTA
ATTTGTATCAATTATCTCCTCGAAAAAATAAAGACTATATTTACTTCGAA
ACATCAAGCGTATGTGCGGCACCATTGGGTTATACGAAAGGCAAGAAGCG
ACAATCCATTGGTCTTTCACCTAAATGTTATTTTTATACTTATGTGATGC
ATTTGGTCATTCACGCTTTGGGGTATTTTCACGAGCACACAAGACCCGAC
CGCGACAATTACGTCATAACAGACTACACAAGAACTCTTTGGCCTGATGT
TTATAAAGTGTATTTCGAGAAATTTGAGCCTTGGATGACTGATGACACTT
ACAATAAAACGAATGCTGATTATGATTTCCTCAGTATTATGCATCCGCCC
GTTGACTGGTTCACCATTGGTCCAGACACCATACAAACGCCCGTTTACTC
CGCCCTTACGAATACAAAAAAAGgaaaaaatggATTTACGCCATTCTTCT
GGTCAATAAAACCTCGATCGCAATATTCAGCATACACGTATGAAATGGGA
CAAAGATACACGCTTTCATACTGGGACCAACGTAAAATCGGTTTTGCTTA
TCACTGTCCTTATGACATGCATGGTGAATTTGTCAACTTTCCCGTCGTTT
TCCCGAAGAACTACAAGCCAGATACAAGTTGTTACGATTTGACTGGATTA
TGTTTTGAATGGAAAGTGAGATACAACCGCTGCAACAAAATGCATGAAGG
TACATTAGAAGCACGGCAAACCAGACAATGGTGTCGGCGAACGTGTGGCT
TGTGTACAAGAACCGTTGTAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038452XLOC_038452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061287-exon-scaffold_355-1491911889:234738..234906TCONS_00061287-exon-scaffold_355-1491911889:234738..234906Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:234738..234906TCONS_00061287-exon-scaffold_355-1510915933:234738..234906Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:234738..234906TCONS_00061287-exon-scaffold_355-1575043694:234738..234906Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:236058..236234TCONS_00061287-exon-scaffold_355-1491911889:236058..236234Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:236058..236234TCONS_00061287-exon-scaffold_355-1510915933:236058..236234Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:236058..236234TCONS_00061287-exon-scaffold_355-1575043694:236058..236234Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:236858..236984TCONS_00061287-exon-scaffold_355-1491911889:236858..236984Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:236858..236984TCONS_00061287-exon-scaffold_355-1510915933:236858..236984Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:236858..236984TCONS_00061287-exon-scaffold_355-1575043694:236858..236984Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:237976..238088TCONS_00061287-exon-scaffold_355-1491911889:237976..238088Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:237976..238088TCONS_00061287-exon-scaffold_355-1510915933:237976..238088Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:237976..238088TCONS_00061287-exon-scaffold_355-1575043694:237976..238088Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:238695..238766TCONS_00061287-exon-scaffold_355-1491911889:238695..238766Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:238695..238766TCONS_00061287-exon-scaffold_355-1510915933:238695..238766Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:238695..238766TCONS_00061287-exon-scaffold_355-1575043694:238695..238766Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:239259..239438TCONS_00061287-exon-scaffold_355-1491911889:239259..239438Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:239259..239438TCONS_00061287-exon-scaffold_355-1510915933:239259..239438Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:239259..239438TCONS_00061287-exon-scaffold_355-1575043694:239259..239438Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:239926..240090TCONS_00061287-exon-scaffold_355-1491911889:239926..240090Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:239926..240090TCONS_00061287-exon-scaffold_355-1510915933:239926..240090Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:239926..240090TCONS_00061287-exon-scaffold_355-1575043694:239926..240090Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:240408..240446TCONS_00061287-exon-scaffold_355-1491911889:240408..240446Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:240408..240446TCONS_00061287-exon-scaffold_355-1510915933:240408..240446Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:240408..240446TCONS_00061287-exon-scaffold_355-1575043694:240408..240446Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1491911889:241148..241530TCONS_00061287-exon-scaffold_355-1491911889:241148..241530Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1510915933:241148..241530TCONS_00061287-exon-scaffold_355-1510915933:241148..241530Clytia hemisphaericaexon
TCONS_00061287-exon-scaffold_355-1575043694:241148..241530TCONS_00061287-exon-scaffold_355-1575043694:241148..241530Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061287-proteinTCONS_00061287-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:234738..241530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52029	2.63606	3.06883	1.22812	0.498372	0	0	0	0	0	0	0	0.69854	0.201511	1.34192	14.7387	0	0	0	0	0	0.660445	0.569456	1.41312	0	0.354116	0	0	0.717354	0.510587
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top