TCONS_00061282 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061282
Unique Name	TCONS_00061282
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1626

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_355:149906..156559+
coding sequence from alignment at scaffold_355:149906..156559+

transcript sequence

>TCONS_00061282 ID=TCONS_00061282|Name=TCONS_00061282|organism=Clytia hemisphaerica|type=transcript|length=1626bp
taatagtaaaaaataaaaaataagcatGTCATCCTTCTCAACTTCACATT
TGGAGAAGCGAGTGAAAGCTTTAACCATGTCTCAACAGAGCATCCAAACA
CTCTCCTTGTGGTGTATCCATCACagaaaaagtgcaaaaattaTCGTCAA
ACATTGGTTGAAAGATCTCCTTAAAGCCAAAGTCAAGAAGAAGTTAGCGT
TGATGTATCTGGCTAATGATGTTTTACAGAACAGTCGAAAGAAAGGAACA
GAGTTCAACCAAGAGTTTCGTATTGTCATGCTTGGTGCTGTCAACCATTG
TATACAtaCTGCAGACGATAAATTGGCTAATGCTTTGAAACGAATGCATG
GGATCTGGACCGAGCGGAATGTTTTCGAAGAAGACTTCCTTTCCACTATA
CAACAAGCTATCGGTGGTGGTGAAAAGCAAGATGCGAGCACCACACCTCC
TTTGGATCAAATGCCAATAGATGAATCCGAATTCATGATGACCACTACTG
ATGAGCTCGCCACCGCCACAACTGTCGCCCCAATACACCCTCCTGACCAC
CCTCCGGACCCGGATGAATTGGTGTTACGTTTACAAGAACTCGAACATTC
GGCTACCCAGGATGCAGTTGTTCGTGAACAGATTGCCAACTTACCGACTG
AAGTCACTGATCCTACTTATATCGACAAAGTTGAAGATTTGGAATCAGCT
CGACGTTTACAGGAGAAGATCAACAGTGCATGCGAACTACTCCAAGAATA
CAATACACGTTTATCAGTGGAACAAGTTGATCGCGAACAAACGCGCAAAA
TGTTGCTCGATTATACCACAATGCAACGATACCAAATCTCACAAAccgaa
aataaaattgatgaaTATTTGGGCAAGCTGGAGAAAGTGAAAGCTGTGAG
AAAAGAACTCAAATTACATTTACAGAACTTACCAGATCTAACGAAGTTAC
CGAGTCCAGTACCTCTACCGTCAGCAGGTGATCTTTTCGCAACCAGACGT
TGATAGAACCTCGATTCTTGGTTATGATCAAAAGTCTTGTGTCACCATTT
TTCCGTCCGCTCGCTCGACGTTTGCTACATCACTGAAGTGAAAGCCTCAA
AAGTGTTGCATTTTCCTCTAAGGAGGTACTCGTGTGATTATTAACTGCTT
TTACAAAGAATCGACAACAATTAAGAATCTCATTGTTATTATAGGCCTTC
CAAAAAACGCTGAAATAGACCGTATCATCGGGCTGTTAAAAACTTTTACT
AGAATGATGTTCGTGGCTAAGCCAAAGAGCTGGAGGCTAATAACTTGCCA
AATTCAAAGACATATATTTTGGAGTGCAGAAAAGTTGTTATTTTTGGTGA
AGAGTTTCACTGAAATACGTAGACAAATTATTTTACAACTTTACGTGACA
GTTTATATCATATTTGGATATAATGTAAATGCTGATATGCTGAAATGACT
AATTaatcatttaaaacaaaaatttccactTTGTTCTCGTTTTGTTGAAG
TAAGAAACTTATGCGGGATGAAAGAGTAGTGGAATAAATTAATCGAGCTT
TCGACAAAACAAATTTATCCAATCATCGATCAAATTAAGCCTTTTCAATA
TCGATTCCGTTACAAGCACGGCGGGC

Run BLAST on NCBI

protein sequence of TCONS_00061282-protein

>TCONS_00061282-protein ID=TCONS_00061282-protein|Name=TCONS_00061282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSSFSTSHLEKRVKALTMSQQSIQTLSLWCIHHRKSAKIIVKHWLKDLLK
AKVKKKLALMYLANDVLQNSRKKGTEFNQEFRIVMLGAVNHCIHTADDKL
ANALKRMHGIWTERNVFEEDFLSTIQQAIGGGEKQDASTTPPLDQMPIDE
SEFMMTTTDELATATTVAPIHPPDHPPDPDELVLRLQELEHSATQDAVVR
EQIANLPTEVTDPTYIDKVEDLESARRLQEKINSACELLQEYNTRLSVEQ
VDREQTRKMLLDYTTMQRYQISQTENKIDEYLGKLEKVKAVRKELKLHLQ
NLPDLTKLPSPVPLPSAGDLFATRR

Run BLAST on NCBI

transcript from alignment at scaffold_355:149906..156559+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061282 ID=TCONS_00061282|Name=TCONS_00061282|organism=Clytia hemisphaerica|type=transcript|length=6654bp|location=Sequence derived from alignment at scaffold_355:149906..156559+ (Clytia hemisphaerica)
taatagtaaaaaataaaaaataagcatGTCATCCTTCTCAACTTCACATT
TGGAGAAGCGAGTGAAAGCTTTAACCATGTCTCAACAGAGCATCCAAACA
CTCTCCTTGTGGTGTATCCATCACagaaaaagtgcaaaaattaTCGTCAA
ACATTGGTTGAAAGATCTCCTTAAAGGTATGGATATTATATATGCTTTAT
AGCACAAAGagtaattttattgaaaaaaaacacattacGTTAGGGCTACA
TAATAAACTGTACAATGTATTGCCAGGCTTTTTCAATTTATTATCAGCTT
GAGTAGCGAcagggggggtcagtactaaaatgtaagacatacatgagtac
taaaaggattttcgctaatttttgacataccaccacctatttttcgaaaa
tgttattttagtacacatgtactaaaattattttgaccaATTTAACATAG
ATAACACCCATATTTTGCCCTTTGGCGGCTTTAAATTTACtaaaatgggg
tcattgttacaaacctagttgaatttagtgcatcaatctgcaaaataata
taattttattactaaactgtgctgaactgtacataaaaatatttttaaaa
aatatttaaaaaagtggaaaaattctgaaagatttctgaaaatttttttg
aaaatggtttgcAAACCagtaaataattttctttctgtaaacaatttgac
caggggggggggggtcagtactaaaatctcagacatcatgacatttagtg
acgtggtggtactgcaaaaaagctcaaaaataattttagtaccatgtgta
ctaaaataacattttcgaaaaataggtggaggtatgtcaaaaattagcga
aaatccttttagtactcatgtatgtcttacattttagtactgaccccccc
ccccctggtagcgatatttacagaaagaaaattatttactGGTTTGCAAA
CCATATCGTCAAATATTTTGTATTGTATAGTctaatgacaaagaaaatga
aagaacaaaAATCAATAGAATAATTCATACTTTAATTTTTGGCAGCCAAA
GTCAAGAAGAAGTTAGCGTTGATGTATCTGGCTAATGATGTTTTACAGAA
CAGTCGAAAGAAAGGAACAGAGTTCAACCAAGAGTTTCGTATTGTCATGC
TTGGTGCTGTCAACCATTGTATACAGTAAGTAGGCTCCTCTATTCTAAAA
TAGATATACCTTTTTTGTAAAGatgatttcattttaaaaatgattaaagT
TTAGGTGAACCAATAATAATCGAAACTAGAATTTAGTGCTTTGGGACCAC
TGCCTCCAACACCAAAACAACGATATATTCTGTATAGTTGATATAATAAT
CATATTGTAAATAGTAAGTAAGCTCCTCTATTCTAAAATAGATAGACCTT
TTTGTAAAGAAAATGTCATGATGAAAGTCTAGTTGAACCAATCATAATCG
AAAATAGACTTTAGGATAGTGCTTTGGGACCACTGCCTCCAACACCAAAA
CAACCATATACTCTGTATAGTTGATATAATAATCATATTGTATATAGTAA
GTAAGCTCCTCTATTCTAAAATAGATAGACCTTTTTGTAAAGAAAATGTC
ATGATGAAAGTCTAGGTGAACCAATCATAATCGAAAATAGACTTTAGGAT
AGTGCTTTGGGACCACTGACTCCAACACCAAAACAAACTCTGTATAATAA
TCATATTGTAAATAGTAAGTAAGCTCCTCTATTCTAAAATAGATAGACCT
TTTTGTAAAGAAAATGTCATGATGAAAGTCTAGGTGAACCAATCATAATC
GAAAATAGACTTAAGGTCATGAGTGGAATACCACAAGAAAGTTTTTTGGG
ATTACTGACACCAACATCAAAACAATCGCTCATTCTGTATAATTAATATA
ATAATCATATTGTAAATATCTTCTTGGCATTGTACTGGTAATGGAGTTTT
TCAACATGACATGGTCTTTGGAAAAACAGTGTCTCCCGAAAAAAGCAGAC
ACATTTTTATGTAtaagtaaaatcctcataatttatgCCAAATTTTGTGA
CTTTATACTtatttttttgggacacactgtagtGCTTAATAATTTTCAAC
TCCATAACCAAAAACCTCTGGATTTTTATTTAGTTATAGAACATTAGATT
TTGGGAAGCTtgtgaaattcttttgtttgcagttctaaaataacttttaa
ctttttttccgGTTCCTTTCTCTTACCAGTATGATATAGGGGTCCGTAGG
GAGAGCCTGGGGAATTTTTTCGTATCACCTAATTATAGGTAAATGAATAT
TTTCGAGGAGTGCTCATCAGTACAAGTAGATCTGCAGAGCCAAATatcta
aatttattttcttttaaaaaataaaacgcACTGACAGTGTAGTATAGTAT
CTTCTGATTTTTTAAgaattaaattttgataaaaaatttgaagttaATGA
TAGTAACAGATAGTAAAAGCACTGAAAACAATGTCACTAATAATTTTTGA
ctcattcttttttttcagtaCTGCAGACGATAAATTGGCTAATGCTTTGA
AACGAATGCATGGGATCTGGACCGAGCGGAATGTTTTCGAAGAAGACTTC
CTTTCCACTATACAACAAGCTATCGGTTAGAAGACAATCAATTTATACGT
ATGAAAAAGATACAATGAAgactctttaattcgaaccgcTATAACtggaa
tgtctccttaactcttTAACGACTGCGTCTTTTTATTTGTCCGTGCCTAA
AATACCGCCGGCTTTTTCTACTGACTGTTCTTAAAATACCGCGGCTTTTT
TACGTGCCATGCCAAAAATACTGATGACGAGATCTCTCATCATAACCTTG
TTTGAGGGTTCGTGACTGAATGACGAAATATATCGTCAAAAAGTTTATTG
GGGGCTCACTTCTATAACTTAAGAACGAAACGACTTTTTCGAAACCCGCA
CCCCCCCCCCACCAAATAATTGCGAGTTATCTCGTCATCAGTATTTTTGG
CACGGAACGCGATGACGATGTATCTCGGCATCAGTATTTTTGGCACGGAA
CGCGATGACGAGATATCTCGTCATCGGTTGTTAAAGGGTTAACTCAACAA
TTTCtcttgtcccttcagttaactaTACCTTATAAagtttactccataac
tcgaaacttccataattcaaacaaatttgtgtccCCCGTACGTATTCGAG
TCATGGAGACACCAGCAAGGTCTTACCAAtgactttatttttatttactg
GGTTTTATACTTCTTGTAGCAACCTTTGAAAGTACATGCTTTTATGAGCG
TAATGTTTAAGCATACTGAGACCTGTatgaaaaattaagcatatcaTATT
AAGCCTATAATTGAGTTTTGGCCATGGGTCATTCTTCTGGGTTGGTTGTg
tacttcattttcatttttattttcagttaaTTCTAAAAGATAGGTCAGCA
TAACTGAACCTGTTTTTCAATGTGGGtacatttctttcttttctatCCTC
TACAGGTGGTGGTGAAAAGCAAGATGCGAGCACCACACCTCCTTTGGATC
AAATGCCAATAGATGAATCCGAATTCATGATGACCACTACTGATGAGCTC
GCCACCGCCACAACTGTCGCCCCAATACACCCTCCTGACCACCCTCCGGA
CGTATGTTCATTTCATTTACACCTTTACTAAAAAGTATTTTAATGTTCCA
GTTTTAAGACGACAACACTGAAGGTGAACGCAAGGTTGTGTGTTCAACCC
CCaaccgggtcataccaaagattctcaaaatggtacttgatgcctctctg
cttgattctcagcaattaagagaaggatcaaggctaagtggagcaatcca
gggaaaaAGAGTTGCGCCCtaccctaccttcgggtagatagctatctaAA
GAGAAGCCTTCCGGTCGCTTCCGACTgcagtcgcagacttacttacagGT
CAAAGATTTCCAGATTAATAATTACTGCGATTCCTTTTTGATTTGACAAT
AAAACCTCTAAAATGCTTCATTGGTTTTCGACATTTTACTCCTGACACGA
TTGGAACCTACCCGACTAGAAgcacagttgatgctctcttattcgacgtt
ctactattcgatatgctccccttattcgatgaaaatcatattgctcttaa
aaatcgaattagagagcattaACAGTACATTAAAAGTCTAAGATTACgga
aaatgttttaatatttttttgttccaGCCGGATGAATTGGTGTTACGTTT
ACAAGAACTCGAACATTCGGCTACCCAGGATGCAGTTGTTCGTGAACAGA
TTGCCAACTTACCGACTGAAGTCACTGATCCTACTTATATCGACAAAGTT
GAAGGTATTTcagggatcgaattagcgtatcgcatttcacaattcgcgat
gcgtttttggattacttacaagcttagaattgaaaattgatccagtTTAG
GATGCAGAATCGTGCTTACAAAAAAATTACGATGCCTGTATTTGAAATAA
AGAAGACCTTTTCGAATCGAAAATTCAGTCAAGTCTCTAGAACTGGAACC
TCTGTTACTAGAATTTCTACTTAATTCGAACAGTTTTTCTTGTCCCTTCA
CTaaaaaatgccttataaaccagtctcaataactcgaaaattgcctAACT
CGAGCAATTTAAGTTCCCCGTacgtgttcgagttaaagagccTCTACTGT
GATACTAAACTTCATTCAGTCATTCACAGTTCGAATCCTCCAAGCTAAGA
TTTAGCGGGAAAATgtgaaataactttttaaagatattcttttttttatg
cTATACAATAGAAAGGAGGCGCCTTCTTATGCTGATGAAGTAGAAATTCT
AAGATAGAATTCCTCAAAAAAGCTATTCTTCCTTTTGGTTAAGCtttgta
agcaaatggtaggagataccTTAAATGATTATCCTATAAACTTTTACCAT
AGATTTGGAATCAGCTCGACGTTTACAGGAGAAGATCAACAGTGCATGCG
AACTACTCCAAGAATACAATACACGTTTATCAGTGGAACAAGTTGATCGC
GAACAAACGCGCAAAATGTTGCTCGATTATACCACAATGCAACGATACCA
AATCTCACAAAccgaaaataaaattgatgtaaGTCGTCAGTCAGTTGAAT
CTTTTAaatcaaattgttcttaaaggttttgttttttaaaatgaGAGTGA
TATCGTTTCCGGTCACTCATCAGTTtaaatttacaagctttttcacattg
aattgacacggatgtggagcaagattggacAGAAAGAGGAATAATATgag
atatgtgtctgatatgaaacgagaaCGCTTATGTAAAAATTAAACCTTGA
ATATTCTCCATTGCAAACCAACCAACACGTCCAATAAGTTGACATAAAGT
GCAATGGGTTCGCTCTGATGCATGCAATTTTAAAATTACACTctgaaata
tcaaaaaacatCGATATtcattttaaactttgaagGGGAATATTAGTAAT
ATGAAACTTTTCACCTTTCaatctttctcttctttctttctaaatttgga
cgaaccatagtccgtataaaaaagcATTGGTCTGGAAACAtaatgtttta
actttttgttagctttttcctttgttaatatcaaaagataaaaatcgatt
tgctcagtttttgattgctttaccaagtactcctcttgggattggtttaa
gatttaatcacatgttcaaaaagtgagcaaaacaaactaatttctcaaat
gcaagttcaagtaagaaacaatggaaagaaacaaagcTTCCAGACGAGGC
CTTTTTCTATGGACTATGAACGAACCTAAAGGACGAAAAtctgtctgttt
ttttttatctcatatataattttgttttcttttgtttcaggaaTATTTGG
GCAAGCTGGAGAAAGTGAAAGCTGTGAGAAAAGAACTCAAATTACATTTA
CAGAACTTACCAGATCTAACGAAGTTACCGAGTCCAGTACCTCTACCGTC
AGCAGGTGATCTTTTCGCAACCAGACGTTGATAGAACCTCGATTCTTGGT
TATGATCAAAAGTCTTGTGTCACCATTTTTCCGTCCGCTCGCTCGACGTT
TGCTACATCACTGAAGTGAAAGCCTCAAAAGTGTTGCATTTTCCTCTAAG
GAGGTACTCGTGTGATTATTAACTGCTTTTACAAAGAATCGACAACAATT
AAGAATCTCATTGTTATTATAGGCCTTCCAAAAAACGCTGAAATAGACCG
TATCATCGGGCTGTTAAAAACTTTTACTAGAATGATGTTCGTGGCTAAGC
CAAAGAGCTGGAGGCTAATAACTTGCCAAATTCAAAGACATATATTTTGG
AGTGCAGAAAAGTTGTTATTTTTGGTGAAGAGTTTCACTGAAATACGTAG
ACAAATTATTTTACAACTTTACGTGACAGTTTATATCATATTTGGATATA
ATGTAAATGCTGATATGCTGAAATGACTAATTaatcatttaaaacaaaaa
tttccactTTGTTCTCGTTTTGTTGAAGTAAGAAACTTATGCGGGATGAA
AGAGTAGTGGAATAAATTAATCGAGCTTTCGACAAAACAAATTTATCCAA
TCATCGATCAAATTAAGCCTTTTCAATATCGATTCCGTTACAAGCACGGC
GGGC

Coding sequence (CDS) from alignment at scaffold_355:149906..156559+

>TCONS_00061282 ID=TCONS_00061282|Name=TCONS_00061282|organism=Clytia hemisphaerica|type=CDS|length=6846bp|location=Sequence derived from alignment at scaffold_355:149906..156559+ (Clytia hemisphaerica)
atGTCATCCTTCTCAACTTCACATTTGGAGAAGCGAGTGAAAGCTTTAAC
CATGTCTCAACAGAGCATCCAAACACTCTCCTTGTGGTGTATCCATCACa
gaaaaagtgcaaaaattaTCGTCAAACATTGGTTGAAAGATCTCCTTAAA
GCCAAAGTCAAGAAGAAGTTAGCGTTGATGTATCTGGCTAATGATGTTTT
ACAGAACAGTCGAAAGAAAGGAACAGAGTTCAACCAAGAGTTTCGTATTG
TCATGCTTGGTGCTGTCAACCATTGTATACAtaCTGCAGACGATAAATTG
GCTAATGCTTTGAAACGAATGCATGGGATCTGGACCGAGCGGAATGTTTT
CGAAGAAGACTTCCTTTCCACTATACAACAAGCTATCGGTGGTGGTGAAA
AGCAAGATGCGAGCACCACACCTCCTTTGGATCAAATGCCAATAGATGAA
TCCGAATTCATGATGACCACTACTGATGAGCTCGCCACCGCCACAACTGT
CGCCCCAATACACCCTCCTGACCACCCTCCGGACCCGGATGAATTGGTGT
TACGTTTACAAGAACTCGAACATTCGGCTACCCAGGATGCAGTTGTTCGT
GAACAGATTGCCAACTTACCGACTGAAGTCACTGATCCTACTTATATCGA
CAAAGTTGAAGATTTGGAATCAGCTCGACGTTTACAGGAGAAGATCAACA
GTGCATGCGAACTACTCCAAGAATACAATACACGTTTATCAGTGGAACAA
GTTGATCGCGAACAAACGCGCAAAATGTTGCTCGATTATACCACAATGCA
ACGATACCAAATCTCACAAAccgaaaataaaattgatgaaTATTTGGGCA
AGCTGGAGAAAGTGAAAGCTGTGAGAAAAGAACTCAAATTACATTTACAG
AACTTACCAGATCTAACGAAGTTACCGAGTCCAGTACCTCTACCGTCAGC
AGGTGATCTTTTCGCAACCAGACGTTGAatGTCATCCTTCTCAACTTCAC
ATTTGGAGAAGCGAGTGAAAGCTTTAACCATGTCTCAACAGAGCATCCAA
ACACTCTCCTTGTGGTGTATCCATCACagaaaaagtgcaaaaattaTCGT
CAAACATTGGTTGAAAGATCTCCTTAAAGCCAAAGTCAAGAAGAAGTTAG
CGTTGATGTATCTGGCTAATGATGTTTTACAGAACAGTCGAAAGAAAGGA
ACAGAGTTCAACCAAGAGTTTCGTATTGTCATGCTTGGTGCTGTCAACCA
TTGTATACAtaCTGCAGACGATAAATTGGCTAATGCTTTGAAACGAATGC
ATGGGATCTGGACCGAGCGGAATGTTTTCGAAGAAGACTTCCTTTCCACT
ATACAACAAGCTATCGGTGGTGGTGAAAAGCAAGATGCGAGCACCACACC
TCCTTTGGATCAAATGCCAATAGATGAATCCGAATTCATGATGACCACTA
CTGATGAGCTCGCCACCGCCACAACTGTCGCCCCAATACACCCTCCTGAC
CACCCTCCGGACCCGGATGAATTGGTGTTACGTTTACAAGAACTCGAACA
TTCGGCTACCCAGGATGCAGTTGTTCGTGAACAGATTGCCAACTTACCGA
CTGAAGTCACTGATCCTACTTATATCGACAAAGTTGAAGATTTGGAATCA
GCTCGACGTTTACAGGAGAAGATCAACAGTGCATGCGAACTACTCCAAGA
ATACAATACACGTTTATCAGTGGAACAAGTTGATCGCGAACAAACGCGCA
AAATGTTGCTCGATTATACCACAATGCAACGATACCAAATCTCACAAAcc
gaaaataaaattgatgaaTATTTGGGCAAGCTGGAGAAAGTGAAAGCTGT
GAGAAAAGAACTCAAATTACATTTACAGAACTTACCAGATCTAACGAAGT
TACCGAGTCCAGTACCTCTACCGTCAGCAGGTGATCTTTTCGCAACCAGA
CGTTGAatGTCATCCTTCTCAACTTCACATTTGGAGAAGCGAGTGAAAGC
TTTAACCATGTCTCAACAGAGCATCCAAACACTCTCCTTGTGGTGTATCC
ATCACagaaaaagtgcaaaaattaTCGTCAAACATTGGTTGAAAGATCTC
CTTAAAGCCAAAGTCAAGAAGAAGTTAGCGTTGATGTATCTGGCTAATGA
TGTTTTACAGAACAGTCGAAAGAAAGGAACAGAGTTCAACCAAGAGTTTC
GTATTGTCATGCTTGGTGCTGTCAACCATTGTATACAtaCTGCAGACGAT
AAATTGGCTAATGCTTTGAAACGAATGCATGGGATCTGGACCGAGCGGAA
TGTTTTCGAAGAAGACTTCCTTTCCACTATACAACAAGCTATCGGTGGTG
GTGAAAAGCAAGATGCGAGCACCACACCTCCTTTGGATCAAATGCCAATA
GATGAATCCGAATTCATGATGACCACTACTGATGAGCTCGCCACCGCCAC
AACTGTCGCCCCAATACACCCTCCTGACCACCCTCCGGACCCGGATGAAT
TGGTGTTACGTTTACAAGAACTCGAACATTCGGCTACCCAGGATGCAGTT
GTTCGTGAACAGATTGCCAACTTACCGACTGAAGTCACTGATCCTACTTA
TATCGACAAAGTTGAAGATTTGGAATCAGCTCGACGTTTACAGGAGAAGA
TCAACAGTGCATGCGAACTACTCCAAGAATACAATACACGTTTATCAGTG
GAACAAGTTGATCGCGAACAAACGCGCAAAATGTTGCTCGATTATACCAC
AATGCAACGATACCAAATCTCACAAAccgaaaataaaattgatgaaTATT
TGGGCAAGCTGGAGAAAGTGAAAGCTGTGAGAAAAGAACTCAAATTACAT
TTACAGAACTTACCAGATCTAACGAAGTTACCGAGTCCAGTACCTCTACC
GTCAGCAGGTGATCTTTTCGCAACCAGACGTTGAatGTCATCCTTCTCAA
CTTCACATTTGGAGAAGCGAGTGAAAGCTTTAACCATGTCTCAACAGAGC
ATCCAAACACTCTCCTTGTGGTGTATCCATCACagaaaaagtgcaaaaat
taTCGTCAAACATTGGTTGAAAGATCTCCTTAAAGCCAAAGTCAAGAAGA
AGTTAGCGTTGATGTATCTGGCTAATGATGTTTTACAGAACAGTCGAAAG
AAAGGAACAGAGTTCAACCAAGAGTTTCGTATTGTCATGCTTGGTGCTGT
CAACCATTGTATACAtaCTGCAGACGATAAATTGGCTAATGCTTTGAAAC
GAATGCATGGGATCTGGACCGAGCGGAATGTTTTCGAAGAAGACTTCCTT
TCCACTATACAACAAGCTATCGGTGGTGGTGAAAAGCAAGATGCGAGCAC
CACACCTCCTTTGGATCAAATGCCAATAGATGAATCCGAATTCATGATGA
CCACTACTGATGAGCTCGCCACCGCCACAACTGTCGCCCCAATACACCCT
CCTGACCACCCTCCGGACCCGGATGAATTGGTGTTACGTTTACAAGAACT
CGAACATTCGGCTACCCAGGATGCAGTTGTTCGTGAACAGATTGCCAACT
TACCGACTGAAGTCACTGATCCTACTTATATCGACAAAGTTGAAGATTTG
GAATCAGCTCGACGTTTACAGGAGAAGATCAACAGTGCATGCGAACTACT
CCAAGAATACAATACACGTTTATCAGTGGAACAAGTTGATCGCGAACAAA
CGCGCAAAATGTTGCTCGATTATACCACAATGCAACGATACCAAATCTCA
CAAAccgaaaataaaattgatgaaTATTTGGGCAAGCTGGAGAAAGTGAA
AGCTGTGAGAAAAGAACTCAAATTACATTTACAGAACTTACCAGATCTAA
CGAAGTTACCGAGTCCAGTACCTCTACCGTCAGCAGGTGATCTTTTCGCA
ACCAGACGTTGAatGTCATCCTTCTCAACTTCACATTTGGAGAAGCGAGT
GAAAGCTTTAACCATGTCTCAACAGAGCATCCAAACACTCTCCTTGTGGT
GTATCCATCACagaaaaagtgcaaaaattaTCGTCAAACATTGGTTGAAA
GATCTCCTTAAAGCCAAAGTCAAGAAGAAGTTAGCGTTGATGTATCTGGC
TAATGATGTTTTACAGAACAGTCGAAAGAAAGGAACAGAGTTCAACCAAG
AGTTTCGTATTGTCATGCTTGGTGCTGTCAACCATTGTATACAtaCTGCA
GACGATAAATTGGCTAATGCTTTGAAACGAATGCATGGGATCTGGACCGA
GCGGAATGTTTTCGAAGAAGACTTCCTTTCCACTATACAACAAGCTATCG
GTGGTGGTGAAAAGCAAGATGCGAGCACCACACCTCCTTTGGATCAAATG
CCAATAGATGAATCCGAATTCATGATGACCACTACTGATGAGCTCGCCAC
CGCCACAACTGTCGCCCCAATACACCCTCCTGACCACCCTCCGGACCCGG
ATGAATTGGTGTTACGTTTACAAGAACTCGAACATTCGGCTACCCAGGAT
GCAGTTGTTCGTGAACAGATTGCCAACTTACCGACTGAAGTCACTGATCC
TACTTATATCGACAAAGTTGAAGATTTGGAATCAGCTCGACGTTTACAGG
AGAAGATCAACAGTGCATGCGAACTACTCCAAGAATACAATACACGTTTA
TCAGTGGAACAAGTTGATCGCGAACAAACGCGCAAAATGTTGCTCGATTA
TACCACAATGCAACGATACCAAATCTCACAAAccgaaaataaaattgatg
aaTATTTGGGCAAGCTGGAGAAAGTGAAAGCTGTGAGAAAAGAACTCAAA
TTACATTTACAGAACTTACCAGATCTAACGAAGTTACCGAGTCCAGTACC
TCTACCGTCAGCAGGTGATCTTTTCGCAACCAGACGTTGAatGTCATCCT
TCTCAACTTCACATTTGGAGAAGCGAGTGAAAGCTTTAACCATGTCTCAA
CAGAGCATCCAAACACTCTCCTTGTGGTGTATCCATCACagaaaaagtgc
aaaaattaTCGTCAAACATTGGTTGAAAGATCTCCTTAAAGCCAAAGTCA
AGAAGAAGTTAGCGTTGATGTATCTGGCTAATGATGTTTTACAGAACAGT
CGAAAGAAAGGAACAGAGTTCAACCAAGAGTTTCGTATTGTCATGCTTGG
TGCTGTCAACCATTGTATACAtaCTGCAGACGATAAATTGGCTAATGCTT
TGAAACGAATGCATGGGATCTGGACCGAGCGGAATGTTTTCGAAGAAGAC
TTCCTTTCCACTATACAACAAGCTATCGGTGGTGGTGAAAAGCAAGATGC
GAGCACCACACCTCCTTTGGATCAAATGCCAATAGATGAATCCGAATTCA
TGATGACCACTACTGATGAGCTCGCCACCGCCACAACTGTCGCCCCAATA
CACCCTCCTGACCACCCTCCGGACCCGGATGAATTGGTGTTACGTTTACA
AGAACTCGAACATTCGGCTACCCAGGATGCAGTTGTTCGTGAACAGATTG
CCAACTTACCGACTGAAGTCACTGATCCTACTTATATCGACAAAGTTGAA
GATTTGGAATCAGCTCGACGTTTACAGGAGAAGATCAACAGTGCATGCGA
ACTACTCCAAGAATACAATACACGTTTATCAGTGGAACAAGTTGATCGCG
AACAAACGCGCAAAATGTTGCTCGATTATACCACAATGCAACGATACCAA
ATCTCACAAAccgaaaataaaattgatgaaTATTTGGGCAAGCTGGAGAA
AGTGAAAGCTGTGAGAAAAGAACTCAAATTACATTTACAGAACTTACCAG
ATCTAACGAAGTTACCGAGTCCAGTACCTCTACCGTCAGCAGGTGATCTT
TTCGCAACCAGACGTTGAatGTCATCCTTCTCAACTTCACATTTGGAGAA
GCGAGTGAAAGCTTTAACCATGTCTCAACAGAGCATCCAAACACTCTCCT
TGTGGTGTATCCATCACagaaaaagtgcaaaaattaTCGTCAAACATTGG
TTGAAAGATCTCCTTAAAGCCAAAGTCAAGAAGAAGTTAGCGTTGATGTA
TCTGGCTAATGATGTTTTACAGAACAGTCGAAAGAAAGGAACAGAGTTCA
ACCAAGAGTTTCGTATTGTCATGCTTGGTGCTGTCAACCATTGTATACAt
aCTGCAGACGATAAATTGGCTAATGCTTTGAAACGAATGCATGGGATCTG
GACCGAGCGGAATGTTTTCGAAGAAGACTTCCTTTCCACTATACAACAAG
CTATCGGTGGTGGTGAAAAGCAAGATGCGAGCACCACACCTCCTTTGGAT
CAAATGCCAATAGATGAATCCGAATTCATGATGACCACTACTGATGAGCT
CGCCACCGCCACAACTGTCGCCCCAATACACCCTCCTGACCACCCTCCGG
ACCCGGATGAATTGGTGTTACGTTTACAAGAACTCGAACATTCGGCTACC
CAGGATGCAGTTGTTCGTGAACAGATTGCCAACTTACCGACTGAAGTCAC
TGATCCTACTTATATCGACAAAGTTGAAGATTTGGAATCAGCTCGACGTT
TACAGGAGAAGATCAACAGTGCATGCGAACTACTCCAAGAATACAATACA
CGTTTATCAGTGGAACAAGTTGATCGCGAACAAACGCGCAAAATGTTGCT
CGATTATACCACAATGCAACGATACCAAATCTCACAAAccgaaaataaaa
ttgatgaaTATTTGGGCAAGCTGGAGAAAGTGAAAGCTGTGAGAAAAGAA
CTCAAATTACATTTACAGAACTTACCAGATCTAACGAAGTTACCGAGTCC
AGTACCTCTACCGTCAGCAGGTGATCTTTTCGCAACCAGACGTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038450	XLOC_038450	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061282-protein	TCONS_00061282-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_355	supercontig	scaffold_355:149906..156559 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.725	110.674	116.342	105.058	51.2539	40.875	46.2238	43.907	31.5843	32.3536	22.8041	20.8433	15.2694	17.189	18.5247	24.1518	34.7338	32.4802	12.8019	13.0899	18.204	16.7195	56.2374	51.3628	23.7094	24.1589	10.6426	9.01319	29.0399	33.1262

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006569	CID_dom
IPR008942	ENTH_VHS
IPR006903	RNA_pol_II-bd
IPR032337	CREPT

Blast

[Close]

BLAST of TCONS_00061282 vs. Swiss-Prot (Human)
Match: RPR1A (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.020e-61
Identity = 132/318 (41.51%), Postives = 199/318 (62.58%), Query Frame = 2

Query:   50 LEKRVKALTMSQQSIQTLSLWCIHHRKSAKIIVKHWXXXXXXXXXXXXXXXXXXXNDVLQNSRKKGTEFNQEFRIVMLGAVNHCIHTADDKLANALKRMHGIWTERNVFEEDFLSTIQQAIGGGEKQDASTTPPLDQMPIDESEFMMXXXXXXXXXXXXXXXXXXXXXXXXXELVLRLQELEHSATQDAVVREQIANLPTEVTDPTYIDKVEDLESARRLQEKINSACELLQEYNTRLSVEQVDREQTRKMLLDYTTMQRYQISQTENKIDEYLGKLEKVKAVRKELKLHLQNLPDLTKLP----SPVPLPSAGDLFA 991
            LEK++  L+ SQQS+QTLSLW IHHRK ++ IV  W ++L KAK  +KL  +YLANDV+QNS++KG EF ++F  V++ A  H     D+     L R+  IW ER+V+E D L  ++QA+ G +K    T    +Q+ +DE+E               + +  P  PP   +LV  LQ+LE++A+ DA V ++IA+LP EV + + +DK+ D ES  RL + +  AC LL +YN RL+ E  DR+Q  +ML D+   Q+  +++ E+K++EY  KL +V  VRKEL+  +Q+LPDL++LP    S + LP AGD+++
Sbjct:    9 LEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRT---YEQIKVDENE-------------NCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAGDIYS 310

The following BLAST results are available for this feature:

BLAST of TCONS_00061282 vs. Swiss-Prot (Human)

BLAST of TCONS_00061282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPR1A	1.020e-61	41.51	Regulation of nuclear pre-mRNA domain-containing p...	[more]

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TCONS_00061282 (transcript) - C. hemisphaerica